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Lsi02G003950 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G003950
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionshort-chain dehydrogenase TIC 32, chloroplastic-like
Genome locationchr02:3360299..3360749
RNA-Seq ExpressionLsi02G003950
SyntenyLsi02G003950
Gene Ontology termsGO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019803.1 Short-chain dehydrogenase TIC 32, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-2795.59Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGE
        MASKLLKSIPQGAATTCYVALSPQT RKTG+YFADCNETKCSSLANDELAARTLW+QTRALILRELGE
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGE

XP_022924073.1 short-chain dehydrogenase TIC 32, chloroplastic-like [Cucurbita moschata]1.9e-2795.59Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGE
        MASKLLKSIPQGAATTCYVALSPQT RKTG+YFADCNETKCSSLANDELAARTLW+QTRALILRELGE
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGE

XP_023000696.1 short-chain dehydrogenase TIC 32, chloroplastic-like [Cucurbita maxima]1.7e-2898.53Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGE
        MASKLLKSIPQGAATTCYVALSPQTQRKTG+YFADCNETKCSSLANDELAARTLWMQTRALILRELGE
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGE

XP_038895223.1 short-chain dehydrogenase TIC 32 A, chloroplastic-like isoform X1 [Benincasa hispida]3.9e-2895.71Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGEAA
        MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCN+TKCSSLANDEL ARTLWMQTRALILRELGE A
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGEAA

XP_038895224.1 short-chain dehydrogenase TIC 32 A, chloroplastic-like isoform X2 [Benincasa hispida]3.9e-2895.71Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGEAA
        MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCN+TKCSSLANDEL ARTLWMQTRALILRELGE A
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGEAA

TrEMBL top hitse value%identityAlignment
A0A4U5MIW5 Short-chain dehydrogenase/reductase family protein1.5e-1772.73Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILREL
        +ASKLLKS  QGA+TTCYVALSPQT+  +GKYFADCNE+ CS+LANDEL A+ LWMQT AL+ R L
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILREL

A0A6I9SP65 short-chain dehydrogenase TIC 32, chloroplastic isoform X11.5e-1776.56Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILR
        MASKLLKS  QGAATTCYVALSPQT   +GKYFADCNE++CS+LAN+E  AR LW QTRALI R
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILR

A0A6J1C5L3 short-chain dehydrogenase TIC 32, chloroplastic-like5.1e-2686.11Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGEAACA
        MASKLLKSIPQGAATTCYVAL+PQT+RKTGKYF+DCNETKCS+LAN+ELAAR LWMQTRALI R+LGE A A
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGEAACA

A0A6J1EBB9 short-chain dehydrogenase TIC 32, chloroplastic-like9.4e-2895.59Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGE
        MASKLLKSIPQGAATTCYVALSPQT RKTG+YFADCNETKCSSLANDELAARTLW+QTRALILRELGE
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGE

A0A6J1KGJ5 short-chain dehydrogenase TIC 32, chloroplastic-like8.5e-2998.53Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGE
        MASKLLKSIPQGAATTCYVALSPQTQRKTG+YFADCNETKCSSLANDELAARTLWMQTRALILRELGE
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGE

SwissProt top hitse value%identityAlignment
A0A078IS66 Short-chain dehydrogenase TIC 32 A, chloroplastic1.1e-0960Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLW
        M+  L K+IPQGAATTCYVAL P  +  TGKYFADCN T  S+ A D   A  LW
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLW

A0A078ISJ6 Short-chain dehydrogenase TIC 32 B, chloroplastic3.2e-0958.18Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLW
        M+  L K+IPQGAATTCYVAL P  +  TGKYF DCN T  S+ A D   A  LW
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLW

A2RVM0 Short-chain dehydrogenase TIC 32, chloroplastic3.6e-0844.29Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGEAA
        +A  +LKS+PQGAATTCYVAL+PQ    +G+YF D N  K   L  D   A+ +W  +  L   + GE++
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGEAA

Q5R9W5 WW domain-containing oxidoreductase2.8e-0541.79Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELG
        +A    KS+ QGAATT Y A +P+ +   G YF +C     S  A  E  ARTLW  +  LI   LG
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELG

Q6RVV4 Short-chain dehydrogenase TIC 32, chloroplastic2.6e-0649.02Show/hide
Query:  LLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLW
        +LK++ QGAATTCYVAL PQ +  +G+YF+D N  K +    D   A+ LW
Subjt:  LLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLW

Arabidopsis top hitse value%identityAlignment
AT1G64590.1 NAD(P)-binding Rossmann-fold superfamily protein3.2e-1251.61Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALI
        + SKLLKS+PQ AATTCYVA SP+ +   GKYF+DCNE + S   +  L A+ LW  +  L+
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALI

AT4G23420.1 NAD(P)-binding Rossmann-fold superfamily protein6.7e-1052.73Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLW
        +A  ++KS+PQGAATTCYVAL+PQ    TG+YF+D N  K   L  D   A+ LW
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLW

AT4G24050.1 NAD(P)-binding Rossmann-fold superfamily protein9.3e-1250Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALI
        +ASKL+K++PQ AATTCYVA +P+    +GKYF DCNET  S L  +   A  LW  +  L+
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALI

AT5G02540.1 NAD(P)-binding Rossmann-fold superfamily protein6.4e-1366.67Show/hide
Query:  LLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLW
        L K+IPQGAATTCYVAL P  +  TGKYFADCNE   S LA DE  A+ LW
Subjt:  LLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLW

AT5G50130.1 NAD(P)-binding Rossmann-fold superfamily protein3.9e-1869.12Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGE
        +ASKLLKSI QGAATTCYVALS +T+  +GKYFADCNET CS LANDE  A  L  Q+RALI   L E
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAAGTTACTAAAATCCATTCCTCAGGGTGCTGCTACAACATGCTATGTGGCTCTAAGCCCACAAACACAAAGAAAAACAGGAAAATATTTTGCAGATTGTAA
TGAAACTAAGTGTTCATCTCTAGCGAACGACGAGCTAGCAGCACGAACGCTATGGATGCAAACTCGCGCCCTAATTCTCAGAGAACTTGGTGAAGCAGCTTGTGCTACTT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAAAGTTACTAAAATCCATTCCTCAGGGTGCTGCTACAACATGCTATGTGGCTCTAAGCCCACAAACACAAAGAAAAACAGGAAAATATTTTGCAGATTGTAA
TGAAACTAAGTGTTCATCTCTAGCGAACGACGAGCTAGCAGCACGAACGCTATGGATGCAAACTCGCGCCCTAATTCTCAGAGAACTTGGTGAAGCAGCTTGTGCTACTT
AAATATGGTTTCTATTTCATCATCAATAAATTTTCAACTAAGAGAATAGTATATATAAATCTATGCACTTGTAAATGGACAGAGATCCTAGAGTTCATGGAATAAGATCT
CGTAATAAAAATAGGCCCATTTTCTTG
Protein sequenceShow/hide protein sequence
MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSLANDELAARTLWMQTRALILRELGEAACAT