CuGenDBv2

Gene ID	Lsi02G004090
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription termination factor 4
Genome location	chr02:3436975..3439142
RNA-Seq Expression	Lsi02G004090
Synteny	Lsi02G004090
Gene Ontology terms	GO:0090266 - regulation of mitotic cell cycle spindle assembly checkpoint (biological process) GO:0005680 - anaphase-promoting complex (cellular component)
InterPro domains	IPR026182 - Anaphase-promoting complex subunit 15

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152491.1 uncharacterized protein LOC101206898 [Cucumis sativus]

3.7e-42

96.91

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Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNA+ESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG

XP_008438807.1 PREDICTED: uncharacterized protein LOC103483797 [Cucumis melo]

1.5e-43

100

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Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG

XP_018813880.1 uncharacterized protein LOC108985877 [Juglans regia]

2.7e-37

89.8

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Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDI--EAEDDDADNAEESEAEEFEQET
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQP +EELLLAMEESDFEEKCNEIRKTNSNLVVIGK T DNDKED   +A+DDDADNAEESE EEFEQET
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDI--EAEDDDADNAEESEAEEFEQET

XP_022137094.1 uncharacterized protein LOC111008654 [Momordica charantia]

6.3e-42

97.92

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Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQET
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKM+ADNDKEDIEAEDDDADN EESEAEEFEQET
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQET

XP_038894516.1 uncharacterized protein LOC120083062 [Benincasa hispida]

3.7e-42

97.94

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Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSN VVIGKM ADNDKEDIEAEDDDADNAEESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LWF0 Uncharacterized protein

1.8e-42

96.91

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Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNA+ESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG

A0A1S3AXA5 uncharacterized protein LOC103483797

7.3e-44

100

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Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG

A0A5A7UJS1 Transcription termination factor 4

7.3e-44

100

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Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG

A0A6J1GSM6 uncharacterized protein LOC111456762

7.3e-44

100

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Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG

A0A6J1JWJ6 uncharacterized protein LOC111490324

7.3e-44

100

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Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G63135.1 unknown protein

2.4e-31

72.73

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Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKE--DIEAEDDDADNAEESEAEEFEQETG
        MLQFP  MTQ+P ST+TIP S+LLP QWPQPQNEE+LLAMEE++FEEKCNEIRK +  L VIGK   +N++E  D EAEDDDADNAEES+ EEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKE--DIEAEDDDADNAEESEAEEFEQETG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTGCAGTTTCCGGCTTTCATGACACAGTACCCTTGGTCTACAAGGACAATTCCGACGTCGTTTTTACTGCCGTCTCAGTGGCCCCAACCCCAAAACGAAGAGCTACT
GCTCGCCATGGAAGAGTCTGATTTTGAAGAAAAGTGCAATGAAATCAGGAAGACAAACAGCAACCTGGTGGTCATTGGCAAAATGACTGCTGACAATGATAAGGAAGACA
TAGAGGCAGAAGATGATGATGCTGACAATGCTGAGGAATCTGAGGCTGAAGAATTTGAGCAGGAAACTGGTTAA

mRNA sequence

Show/hide mRNA sequence

AAATGTCCTATTTTTGGCAATTTCCCGAGCCCATTCTTCACTCTCGAGTTTCCAGCCCCGGCGAGAAAAATGCTGCAGTTTCCGGCTTTCATGACACAGTACCCTTGGTC
TACAAGGACAATTCCGACGTCGTTTTTACTGCCGTCTCAGTGGCCCCAACCCCAAAACGAAGAGCTACTGCTCGCCATGGAAGAGTCTGATTTTGAAGAAAAGTGCAATG
AAATCAGGAAGACAAACAGCAACCTGGTGGTCATTGGCAAAATGACTGCTGACAATGATAAGGAAGACATAGAGGCAGAAGATGATGATGCTGACAATGCTGAGGAATCT
GAGGCTGAAGAATTTGAGCAGGAAACTGGTTAATAACTACTCTGCATCTTTGTTTCCTTTCCTGTCTTTACTCTTTAGAGTCCTCAATTTTCTAGTTTTCTTTTTCTTTC
TGTTTGTTCACTGTAAATCTGTCACTTTGGAAAGCCAGAGTTTCTATAATCGTTGAATTTACTCCAGTTATAGCTTCAAATTTATGTGCCTCTTGAGCCGATGTTTCTTT
CTTACTTTGTGTTAAAAGTTATTGTTATTGTATTTTCCACTCCATTTGCTTTTAACCAAATGGAGTGGAAAATTTTCATATGTGATCATAGTATTTTAAAGCAGCTGTAT
GTTGAAGGGAAGGGAAGGGAAGACTATTTTGAAT

Protein sequence

Show/hide protein sequence

MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG

Lsi02G004090 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome