CuGenDBv2

Gene ID	Lsi02G004130
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Mediator of RNA polymerase II transcription subunit 13, putative
Genome location	chr02:3457671..3458078
RNA-Seq Expression	Lsi02G004130
Synteny	Lsi02G004130
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8652596.1 hypothetical protein Csa_014373 [Cucumis sativus]

1.4e-44

75.74

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Query:  KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDG
        KKKP+L   HDD RHLEILKAVAQAWH+HTGTSKPA+EFDAHRRNSRP  PSRFK+EAIR+R S+V+DRRWDF QSLWDSYEIVTVSKKLE+        
Subjt:  KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY
              GGGRSQRK+RESCNSLRNLF+RASSRRF+Y
Subjt:  FREADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY

XP_008438871.1 PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo]

2.0e-54

85.29

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Query:  KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDG
        KKKP+L   HD  RHLEILKAVAQAWH HTGTSKPA+EFDAHRRNSRPT PSRFKLEAIR+R +SV++RRWDF QSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY
        FREA+ GGGRSQRK+RESCNSLRNLF+RASSRRF+Y
Subjt:  FREADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY

XP_011651756.1 uncharacterized protein LOC105434938 [Cucumis sativus]

5.3e-55

85.29

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Query:  KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDG
        KKKP+L   HDD RHLEILKAVAQAWH+HTGTSKPA+EFDAHRRNSRP  PSRFK+EAIR+R S+V+DRRWDF QSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY
        FREA+ GGGRSQRK+RESCNSLRNLF+RASSRRF+Y
Subjt:  FREADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY

XP_022137185.1 uncharacterized protein LOC111008716 [Momordica charantia]

5.3e-47

80.29

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Query:  KKKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTRSSVTDR----RWDFGQSLWDSYEIVTVSKKLEAGLVLDGD
        KKKPE++ DDHRHLEILKAVAQAWH+HTG+SKPA EFDAHRRN R T PSRFKLEAIRTRSS  DR    RWDF QSLWDSYEIVTVSKKLEAGLVLDGD
Subjt:  KKKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTRSSVTDR----RWDFGQSLWDSYEIVTVSKKLEAGLVLDGD

Query:  GFREADGGG-GRSQRKKRESCNSLRNLFSRASSRRFH
         F E DGGG GR QRK  ES NSLRNLF+R SSRRF+
Subjt:  GFREADGGG-GRSQRKKRESCNSLRNLFSRASSRRFH

XP_038894267.1 uncharacterized protein LOC120082919 [Benincasa hispida]

7.1e-60

92.54

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Query:  KKKPELQ-HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTRSSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFR
        KKKPELQ  DDHRHLEILKAVAQAWH+HTG+SKPA+EFDAHRRNSRPT PSRFKLEAIRTRSSV+DRRWDFGQSLWDSYEIVTVSKKLEAGLVLD DGFR
Subjt:  KKKPELQ-HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTRSSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFR

Query:  EADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY
        E DGGGGRSQRKKRESCNSLRNLFSRASSRRF+Y
Subjt:  EADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTM3 Uncharacterized protein

2.6e-55

85.29

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Query:  KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDG
        KKKP+L   HDD RHLEILKAVAQAWH+HTGTSKPA+EFDAHRRNSRP  PSRFK+EAIR+R S+V+DRRWDF QSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY
        FREA+ GGGRSQRK+RESCNSLRNLF+RASSRRF+Y
Subjt:  FREADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY

A0A1S3AX17 uncharacterized protein LOC103483829

9.7e-55

85.29

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Query:  KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDG
        KKKP+L   HD  RHLEILKAVAQAWH HTGTSKPA+EFDAHRRNSRPT PSRFKLEAIR+R +SV++RRWDF QSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY
        FREA+ GGGRSQRK+RESCNSLRNLF+RASSRRF+Y
Subjt:  FREADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY

A0A5A7UNW1 Uncharacterized protein

9.7e-55

85.29

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Query:  KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDG
        KKKP+L   HD  RHLEILKAVAQAWH HTGTSKPA+EFDAHRRNSRPT PSRFKLEAIR+R +SV++RRWDF QSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY
        FREA+ GGGRSQRK+RESCNSLRNLF+RASSRRF+Y
Subjt:  FREADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY

A0A6J1C5Z6 uncharacterized protein LOC111008716

2.6e-47

80.29

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Query:  KKKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTRSSVTDR----RWDFGQSLWDSYEIVTVSKKLEAGLVLDGD
        KKKPE++ DDHRHLEILKAVAQAWH+HTG+SKPA EFDAHRRN R T PSRFKLEAIRTRSS  DR    RWDF QSLWDSYEIVTVSKKLEAGLVLDGD
Subjt:  KKKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTRSSVTDR----RWDFGQSLWDSYEIVTVSKKLEAGLVLDGD

Query:  GFREADGGG-GRSQRKKRESCNSLRNLFSRASSRRFH
         F E DGGG GR QRK  ES NSLRNLF+R SSRRF+
Subjt:  GFREADGGG-GRSQRKKRESCNSLRNLFSRASSRRFH

A0A6J1KNC1 uncharacterized protein LOC111495727

9.1e-45

78.79

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Query:  KKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTRSSVTD-RRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFRE
        K   +  D+  HLEILKAVAQAW +HTGTSKPA+EFDAHRRN R   PSRFKLEAIR+RSSV   RRWDFGQSLWDSYEIV VSKKLEAGLVLDGDGFRE
Subjt:  KKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTRSSVTD-RRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFRE

Query:  ADGGGGRSQRKKRESCNSLRNLFSRASSRRFH
        AD GGGR+QRK+RESCNSLRNLF+R +SRRF+
Subjt:  ADGGGGRSQRKKRESCNSLRNLFSRASSRRFH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G24700.1 unknown protein

3.7e-22

45.59

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Query:  KKKKPELQHDDHRHLEILKAVAQAWHTHTGTSK-PATEFDAHRRNS-RPTPPSRFKLEAIRTRSSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDG
        K +  E + +  + LE++KA AQAW +H+ TSK    EFDA R+++      SRFK EA+  +   +   W+FGQSLWD YEI++VSKKLE  L L+   
Subjt:  KKKKPELQHDDHRHLEILKAVAQAWHTHTGTSK-PATEFDAHRRNS-RPTPPSRFKLEAIRTRSSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADGGGGRSQRKK--RESCNSLRNLFSRASSRRF
        F  +D  G +  +KK  R+S NSLR+LF+R+SS+RF
Subjt:  FREADGGGGRSQRKK--RESCNSLRNLFSRASSRRF

Sequences

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CDS sequence

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ATGAAGAAGAAGAAACCAGAGCTTCAACACGACGACCATCGCCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACACCCACACCGGCACTTCAAAGCCTGCAAC
TGAATTCGACGCCCATCGCCGGAATTCCAGACCCACTCCTCCTTCCCGGTTCAAGCTTGAGGCCATTCGAACCCGGTCTTCCGTCACCGATCGGAGATGGGACTTCGGCC
AGTCGCTGTGGGACTCCTATGAGATCGTGACGGTTTCGAAGAAGCTGGAGGCGGGGCTGGTGCTCGATGGCGATGGGTTCCGGGAGGCCGACGGCGGCGGTGGGCGGAGT
CAGCGGAAAAAGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTCAGTAGGGCTTCTTCGAGGAGATTCCATTATTAG

mRNA sequence

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Protein sequence

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MKKKKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTRSSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRS
QRKKRESCNSLRNLFSRASSRRFHY

Lsi02G004130 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome