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Lsi02G004450 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G004450
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPectinesterase
Genome locationchr02:3724817..3728270
RNA-Seq ExpressionLsi02G004450
SyntenyLsi02G004450
Gene Ontology termsGO:0042545 - cell wall modification (biological process)
GO:0043086 - negative regulation of catalytic activity (biological process)
GO:0045490 - pectin catabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030599 - pectinesterase activity (molecular function)
GO:0045330 - aspartyl esterase activity (molecular function)
GO:0046910 - pectinesterase inhibitor activity (molecular function)
InterPro domainsIPR000070 - Pectinesterase, catalytic
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055287.1 putative pectinesterase/pectinesterase inhibitor 41 [Cucumis melo var. makuwa]7.9e-2580Show/hide
Query:  VSMDDS-KDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        VS+D S  DFK+I  AI AAPDNSN RFYIR+TPGTYHERLQI  TKTFIAL+GDNA TTIIVD+RSNA GFKTSDSATL
Subjt:  VSMDDS-KDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

KAA0055288.1 putative pectinesterase/pectinesterase inhibitor 41 [Cucumis melo var. makuwa]3.9e-2478.75Show/hide
Query:  VSMDDSKD-FKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        VS+D S + FK+I  AI AAPDNSN RFYIR+TPGTYHERLQI  TKTFIAL+GDNA TTIIVD+RSNA GFKTSDSATL
Subjt:  VSMDDSKD-FKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

TYJ99206.1 putative pectinesterase/pectinesterase inhibitor 41 [Cucumis melo var. makuwa]4.3e-2380.28Show/hide
Query:  FKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        FK+I +AIVAAPDNSN +FYI +TPGTYHERLQI  TKTF+AL+GDNA TTIIVD+RSNA GFKTSDSATL
Subjt:  FKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

XP_016903572.1 PREDICTED: probable pectinesterase/pectinesterase inhibitor 40 [Cucumis melo]4.3e-2380.28Show/hide
Query:  FKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        FK+I +AIVAAPDNSN +FYI +TPGTYHERLQI  TKTF+AL+GDNA TTIIVD+RSNA GFKTSDSATL
Subjt:  FKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

XP_023511662.1 probable pectinesterase/pectinesterase inhibitor 7 [Cucurbita pepo subsp. pepo]3.3e-2371.6Show/hide
Query:  LVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATLI
        +VS+D S DFKSI+EAI AAPDNSN RFYIR+TPGTY   L+I   K FIAL+GDNA TTIIVDNRS+ TGF T+DSATL+
Subjt:  LVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATLI

TrEMBL top hitse value%identityAlignment
A0A5A7ULX7 Pectinesterase2.1e-2369.14Show/hide
Query:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        + VS+D S +FK I++AIVAAP+NSN RFYI + PGTYHE +QI K K FIAL+GD+AFTTII+DNRSN TGFKT++SATL
Subjt:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

A0A5D3BHF7 Pectinesterase3.8e-2580Show/hide
Query:  VSMDDS-KDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        VS+D S  DFK+I  AI AAPDNSN RFYIR+TPGTYHERLQI  TKTFIAL+GDNA TTIIVD+RSNA GFKTSDSATL
Subjt:  VSMDDS-KDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

A0A5D3BJD0 Pectinesterase2.1e-2380.28Show/hide
Query:  FKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        FK+I +AIVAAPDNSN +FYI +TPGTYHERLQI  TKTF+AL+GDNA TTIIVD+RSNA GFKTSDSATL
Subjt:  FKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

A0A5D3BKF8 Pectinesterase1.9e-2478.75Show/hide
Query:  VSMDDSKD-FKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        VS+D S + FK+I  AI AAPDNSN RFYIR+TPGTYHERLQI  TKTFIAL+GDNA TTIIVD+RSNA GFKTSDSATL
Subjt:  VSMDDSKD-FKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

A0A5D3BM28 Pectinesterase2.1e-2369.14Show/hide
Query:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        + VS+D S +FK I++AIVAAP+NSN RFYI + PGTYHE +QI K K FIAL+GD+AFTTII+DNRSN TGFKT++SATL
Subjt:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

SwissProt top hitse value%identityAlignment
O48711 Probable pectinesterase/pectinesterase inhibitor 121.1e-0843.21Show/hide
Query:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        ++V+ D + +F +INEAI  AP+ SN R  I +  G Y E + I   KT I L+GD +  T I  NRS   G+ T  SATL
Subjt:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

P83218 Pectinesterase2.8e-0938.27Show/hide
Query:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        ++V+ D S D+K+++EA+ AAP++S  R+ IRI  G Y E + + K K  I  +GD   +TII  +++   G  T +SAT+
Subjt:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

Q1JPL7 Pectinesterase/pectinesterase inhibitor 183.7e-0940.74Show/hide
Query:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        ++V+ D +  FK++NEA+ AAP+NSN R+ I +  G Y E + I K K  + LVGD    TII  + +   G  T  SAT+
Subjt:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

Q43143 Pectinesterase/pectinesterase inhibitor U13.7e-0939.02Show/hide
Query:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATLI
        ++V+ D S D+K+++EA+  AP+ S+ R+ IRI  G Y E + + K KT I  +GD    TII  +R+   G  T  SAT++
Subjt:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATLI

Q4PT34 Probable pectinesterase 569.7e-1041.98Show/hide
Query:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        ++V+ D S +F ++NEA+ AAP+N    F I I  G Y E ++I K KT + LVGD    T++  + +   G KT DSATL
Subjt:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

Arabidopsis top hitse value%identityAlignment
AT1G11370.1 Pectin lyase-like superfamily protein6.9e-1141.98Show/hide
Query:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        ++V+ D S +F ++NEA+ AAP+N    F I I  G Y E ++I K KT + LVGD    T++  + +   G KT DSATL
Subjt:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

AT1G11580.1 methylesterase PCR A2.6e-1040.74Show/hide
Query:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        ++V+ D +  FK++NEA+ AAP+NSN R+ I +  G Y E + I K K  + LVGD    TII  + +   G  T  SAT+
Subjt:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

AT1G53830.1 pectin methylesterase 27.6e-1041.77Show/hide
Query:  VSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        V+ D S DF ++  A+ AAP+ SN RF I I  G Y E ++++K KT I  +GD    TII  +R+   G  T  SAT+
Subjt:  VSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

AT2G26440.1 Plant invertase/pectin methylesterase inhibitor superfamily7.6e-1043.21Show/hide
Query:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        ++V+ D + +F +INEAI  AP+ SN R  I +  G Y E + I   KT I L+GD +  T I  NRS   G+ T  SATL
Subjt:  MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL

AT4G02300.1 Plant invertase/pectin methylesterase inhibitor superfamily7.6e-1039.24Show/hide
Query:  VSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL
        V++D + +F +IN+A+ AAP+ S  RF I I  G Y E +++ K KT I  +GD    T+I  NRS   G+ T  + T+
Subjt:  VSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGTATCAATGGATGATTCCAAAGATTTCAAAAGCATTAATGAAGCAATTGTAGCAGCTCCTGACAACTCTAATATACGATTTTACATTCGTATAACTCCAGGAAC
TTACCATGAACGTCTTCAAATTTCAAAAACCAAGACGTTCATTGCTTTGGTTGGTGATAATGCTTTTACAACTATTATCGTTGACAACAGAAGCAACGCCACTGGATTCA
AGACTAGTGACTCGGCGACCCTTATATCTCCAGTGTTTCTCGTAAATAATCCAATCCCATTTGATAGTTATTCGAACAAGCCACATACATATCTTTGGTGTCACGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGTATCAATGGATGATTCCAAAGATTTCAAAAGCATTAATGAAGCAATTGTAGCAGCTCCTGACAACTCTAATATACGATTTTACATTCGTATAACTCCAGGAAC
TTACCATGAACGTCTTCAAATTTCAAAAACCAAGACGTTCATTGCTTTGGTTGGTGATAATGCTTTTACAACTATTATCGTTGACAACAGAAGCAACGCCACTGGATTCA
AGACTAGTGACTCGGCGACCCTTATATCTCCAGTGTTTCTCGTAAATAATCCAATCCCATTTGATAGTTATTCGAACAAGCCACATACATATCTTTGGTGTCACGACTGA
Protein sequenceShow/hide protein sequence
MLVSMDDSKDFKSINEAIVAAPDNSNIRFYIRITPGTYHERLQISKTKTFIALVGDNAFTTIIVDNRSNATGFKTSDSATLISPVFLVNNPIPFDSYSNKPHTYLWCHD