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Lsi02G004510 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G004510
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionShikimate dehydrogenase
Genome locationchr02:3766782..3773558
RNA-Seq ExpressionLsi02G004510
SyntenyLsi02G004510
Gene Ontology termsGO:0008652 - cellular amino acid biosynthetic process (biological process)
GO:0009073 - aromatic amino acid family biosynthetic process (biological process)
GO:0009423 - chorismate biosynthetic process (biological process)
GO:0019632 - shikimate metabolic process (biological process)
GO:0003855 - 3-dehydroquinate dehydratase activity (molecular function)
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity (molecular function)
GO:0050661 - NADP binding (molecular function)
InterPro domainsIPR022893 - Shikimate dehydrogenase family
IPR036291 - NAD(P)-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK12985.1 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Cucumis melo var. makuwa]1.1e-1992.73Show/hide
Query:  QHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP
        +HALK+YSLVFDAVYTP+MTRLLREAEESGAAIVPGLEMF RQAYEQYEGFTGLP
Subjt:  QHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP

XP_008440089.1 PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Cucumis melo]1.1e-1992.73Show/hide
Query:  QHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP
        +HALK+YSLVFDAVYTP+MTRLLREAEESGAAIVPGLEMF RQAYEQYEGFTGLP
Subjt:  QHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP

XP_022950752.1 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic isoform X2 [Cucurbita moschata]1.4e-1991.23Show/hide
Query:  VFQHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP
        + +HALK YSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAY QYEGFTGLP
Subjt:  VFQHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP

XP_038882078.1 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like isoform X1 [Benincasa hispida]8.2e-2092.73Show/hide
Query:  QHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP
        +HAL+YYSLVFDAVY P+MTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP
Subjt:  QHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP

XP_038882079.1 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like isoform X2 [Benincasa hispida]8.2e-2092.73Show/hide
Query:  QHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP
        +HAL+YYSLVFDAVY P+MTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP
Subjt:  QHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP

TrEMBL top hitse value%identityAlignment
A0A0A0KFV4 Uncharacterized protein1.5e-1992.73Show/hide
Query:  QHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP
        +HALK YSLVFDAVYTP+MTRLLREAEESGAAIVPGLEMF RQAYEQYEGFTGLP
Subjt:  QHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP

A0A1S3B0X5 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like5.2e-2092.73Show/hide
Query:  QHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP
        +HALK+YSLVFDAVYTP+MTRLLREAEESGAAIVPGLEMF RQAYEQYEGFTGLP
Subjt:  QHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP

A0A5D3CN48 Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase5.2e-2092.73Show/hide
Query:  QHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP
        +HALK+YSLVFDAVYTP+MTRLLREAEESGAAIVPGLEMF RQAYEQYEGFTGLP
Subjt:  QHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP

A0A6J1GFP6 Shikimate dehydrogenase6.8e-2091.23Show/hide
Query:  VFQHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP
        + +HALK YSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAY QYEGFTGLP
Subjt:  VFQHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP

A0A6J1GFQ4 Shikimate dehydrogenase6.8e-2091.23Show/hide
Query:  VFQHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP
        + +HALK YSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAY QYEGFTGLP
Subjt:  VFQHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP

SwissProt top hitse value%identityAlignment
C6BUS3 Shikimate dehydrogenase (NADP(+))5.9e-0540.43Show/hide
Query:  SLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGL
        +++FD VY P  T L+R+A+  G  ++ G+EMF+ Q  EQ+  +TG+
Subjt:  SLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGL

Q04QM3 Shikimate dehydrogenase (NADP(+))2.0e-0548.89Show/hide
Query:  VFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGL
        +FD VY P  T L++ A+++GA I+PG EM + QA +Q+E FTG+
Subjt:  VFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGL

Q054A8 Shikimate dehydrogenase (NADP(+))2.0e-0548.89Show/hide
Query:  VFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGL
        +FD VY P  T L++ A+++GA I+PG EM + QA +Q+E FTG+
Subjt:  VFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGL

Q8F8C0 Shikimate dehydrogenase (NADP(+))2.7e-0548.89Show/hide
Query:  VFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGL
        +FD VY P  T L++ A+++GA I+PG EM + QA +Q+E FTG+
Subjt:  VFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGL

Q9SQT8 Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic6.7e-1773.68Show/hide
Query:  VFQHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP
        + + ALK+Y+LVFDAVYTP++TRLLREAEESGA  V G EMF+RQAYEQ+E FTGLP
Subjt:  VFQHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP

Arabidopsis top hitse value%identityAlignment
AT3G06350.1 dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative4.8e-1873.68Show/hide
Query:  VFQHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP
        + + ALK+Y+LVFDAVYTP++TRLLREAEESGA  V G EMF+RQAYEQ+E FTGLP
Subjt:  VFQHALKYYSLVFDAVYTPKMTRLLREAEESGAAIVPGLEMFIRQAYEQYEGFTGLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTCTTCCTCTTTATTCTTCATTGCTTTTATTCTTCTTTTCTTATCAATTTTCAACCCATTTAAGTTGGCAAATGCAGATCAGAATACAAATGCCACCAACAATAA
TTTTGCTCATGAGATTTGCAATAGGATTCAATACAACGAATTATACAAAGTGTGCATTCTCGAGATTGATTCTGATCCTCGTGAAGATTTGAAGTCAAGTTTGACGGCTG
TCGTAGATATCGAAGGGAAAAGAACTAAGCGACTCTGTGTTTTTCAGCATGCTCTAAAATACTACTCCCTGGTGTTTGACGCTGTTTACACACCAAAGATGACTAGACTC
TTGCGGGAAGCTGAGGAGTCTGGAGCAGCTATTGTTCCTGGATTGGAGATGTTCATCAGGCAAGCATATGAACAATATGAAGGGTTCACTGGCCTGCCTGATCAGAATAC
AAACGCCACCAACAATAATTTTGCTCATGAGATTTGCAATAGAATTCAATATAAAGAACTATACAAAGTGTGCATTCTCGAGATTGATTCCGATCCTCATGAAGATTTGA
AGTCAAGTTTAACGGTGACTGTGACAACACCACCGCCTTGTAGCCGAGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTTCTTCCTCTTTATTCTTCATTGCTTTTATTCTTCTTTTCTTATCAATTTTCAACCCATTTAAGTTGGCAAATGCAGATCAGAATACAAATGCCACCAACAATAA
TTTTGCTCATGAGATTTGCAATAGGATTCAATACAACGAATTATACAAAGTGTGCATTCTCGAGATTGATTCTGATCCTCGTGAAGATTTGAAGTCAAGTTTGACGGCTG
TCGTAGATATCGAAGGGAAAAGAACTAAGCGACTCTGTGTTTTTCAGCATGCTCTAAAATACTACTCCCTGGTGTTTGACGCTGTTTACACACCAAAGATGACTAGACTC
TTGCGGGAAGCTGAGGAGTCTGGAGCAGCTATTGTTCCTGGATTGGAGATGTTCATCAGGCAAGCATATGAACAATATGAAGGGTTCACTGGCCTGCCTGATCAGAATAC
AAACGCCACCAACAATAATTTTGCTCATGAGATTTGCAATAGAATTCAATATAAAGAACTATACAAAGTGTGCATTCTCGAGATTGATTCCGATCCTCATGAAGATTTGA
AGTCAAGTTTAACGGTGACTGTGACAACACCACCGCCTTGTAGCCGAGCATAG
Protein sequenceShow/hide protein sequence
MCSSSLFFIAFILLFLSIFNPFKLANADQNTNATNNNFAHEICNRIQYNELYKVCILEIDSDPREDLKSSLTAVVDIEGKRTKRLCVFQHALKYYSLVFDAVYTPKMTRL
LREAEESGAAIVPGLEMFIRQAYEQYEGFTGLPDQNTNATNNNFAHEICNRIQYKELYKVCILEIDSDPHEDLKSSLTVTVTTPPPCSRA