CuGenDBv2

Gene ID	Lsi02G004530
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Pectinesterase
Genome location	chr02:3784230..3785274
RNA-Seq Expression	Lsi02G004530
Synteny	Lsi02G004530
Gene Ontology terms	NA
InterPro domains	IPR011050 - Pectin lyase fold/virulence factor IPR012334 - Pectin lyase fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0055285.1 putative pectinesterase/pectinesterase inhibitor 47 [Cucumis melo var. makuwa]

2.1e-18

33.81

Show/hide

Query:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---
        G NFM +SLT ENS   QNGQ VA+FD AD+T+YYKCRFL                                VMFQDCNIYAR+ +NS+TVT Q KD   
Subjt:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---

Query:  ----------------ELGVQK---------------HLLFSKPYYHDFAGD----------------NKFNDQELAGASVSNRVNWPGFHVIDKRLAFS
                        E+   K               +++F + +  D                     +FN+    GA VS RVNW G+H+++K  AF 
Subjt:  ----------------ELGVQK---------------HLLFSKPYYHDFAGD----------------NKFNDQELAGASVSNRVNWPGFHVIDKRLAFS

Query:  YIVNNFIDES
        + V+NFI+ S
Subjt:  YIVNNFIDES

KAA0055286.1 putative pectinesterase/pectinesterase inhibitor 47 [Cucumis melo var. makuwa]

4.2e-19

34.93

Show/hide

Query:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---
        G NFM +SLT ENS   QNGQ VA+FD AD+T+YYKCRFL                                VMFQDCNIYAR+ +NS+TVT Q KD   
Subjt:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---

Query:  ----------------ELGVQKH---LLFSKPY--YHDFAGDNKFNDQELA-------------------------GASVSNRVNWPGFHVIDKRLAFSY
                        E+   K    +   +P+  Y +      F D  +A                         GA VS RVNW G+H++DK+ A  +
Subjt:  ----------------ELGVQKH---LLFSKPY--YHDFAGDNKFNDQELA-------------------------GASVSNRVNWPGFHVIDKRLAFSY

Query:  IVNNFIDES
         V+NFID S
Subjt:  IVNNFIDES

TYJ99208.1 putative pectinesterase/pectinesterase inhibitor 47 [Cucumis melo var. makuwa]

1.2e-18

33.81

Show/hide

Query:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---
        G NFM +SLT ENS   QNGQ VA+FD AD+T+YYKCRFL                                VMFQDCNIYAR+ +NS+TVT Q KD   
Subjt:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---

Query:  ----------------ELGVQK---------------HLLFSKPYYHDFAGD----------------NKFNDQELAGASVSNRVNWPGFHVIDKRLAFS
                        E+   K               +++F + +  D                     +FN+    GA VS RVNW G+H+++K  AF 
Subjt:  ----------------ELGVQK---------------HLLFSKPYYHDFAGD----------------NKFNDQELAGASVSNRVNWPGFHVIDKRLAFS

Query:  YIVNNFIDES
        + V+NFI+ S
Subjt:  YIVNNFIDES

XP_008465578.1 PREDICTED: pectinesterase 2-like, partial [Cucumis melo]

4.2e-19

34.93

Show/hide

Query:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---
        G NFM +SLT ENS   QNGQ VA+FD AD+T+YYKCRFL                                VMFQDCNIYAR+ +NS+TVT Q KD   
Subjt:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---

Query:  ----------------ELGVQKH---LLFSKPY--YHDFAGDNKFNDQELA-------------------------GASVSNRVNWPGFHVIDKRLAFSY
                        E+   K    +   +P+  Y +      F D  +A                         GA VS RVNW G+H++DK+ A  +
Subjt:  ----------------ELGVQKH---LLFSKPY--YHDFAGDNKFNDQELA-------------------------GASVSNRVNWPGFHVIDKRLAFSY

Query:  IVNNFIDES
         V+NFID S
Subjt:  IVNNFIDES

XP_008465596.1 PREDICTED: probable pectinesterase/pectinesterase inhibitor 47, partial [Cucumis melo]

1.2e-18

33.81

Show/hide

Query:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---
        G NFM +SLT ENS   QNGQ VA+FD AD+T+YYKCRFL                                VMFQDCNIYAR+ +NS+TVT Q KD   
Subjt:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---

Query:  ----------------ELGVQK---------------HLLFSKPYYHDFAGD----------------NKFNDQELAGASVSNRVNWPGFHVIDKRLAFS
                        E+   K               +++F + +  D                     +FN+    GA VS RVNW G+H+++K  AF 
Subjt:  ----------------ELGVQK---------------HLLFSKPYYHDFAGD----------------NKFNDQELAGASVSNRVNWPGFHVIDKRLAFS

Query:  YIVNNFIDES
        + V+NFI+ S
Subjt:  YIVNNFIDES

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CP42 Pectinesterase

2.1e-19

34.93

Show/hide

Query:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---
        G NFM +SLT ENS   QNGQ VA+FD AD+T+YYKCRFL                                VMFQDCNIYAR+ +NS+TVT Q KD   
Subjt:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---

Query:  ----------------ELGVQKH---LLFSKPY--YHDFAGDNKFNDQELA-------------------------GASVSNRVNWPGFHVIDKRLAFSY
                        E+   K    +   +P+  Y +      F D  +A                         GA VS RVNW G+H++DK+ A  +
Subjt:  ----------------ELGVQKH---LLFSKPY--YHDFAGDNKFNDQELA-------------------------GASVSNRVNWPGFHVIDKRLAFSY

Query:  IVNNFIDES
         V+NFID S
Subjt:  IVNNFIDES

A0A1S3CP85 Pectinesterase

6.0e-19

33.81

Show/hide

Query:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---
        G NFM +SLT ENS   QNGQ VA+FD AD+T+YYKCRFL                                VMFQDCNIYAR+ +NS+TVT Q KD   
Subjt:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---

Query:  ----------------ELGVQK---------------HLLFSKPYYHDFAGD----------------NKFNDQELAGASVSNRVNWPGFHVIDKRLAFS
                        E+   K               +++F + +  D                     +FN+    GA VS RVNW G+H+++K  AF 
Subjt:  ----------------ELGVQK---------------HLLFSKPYYHDFAGD----------------NKFNDQELAGASVSNRVNWPGFHVIDKRLAFS

Query:  YIVNNFIDES
        + V+NFI+ S
Subjt:  YIVNNFIDES

A0A5A7ULX7 Pectinesterase

2.1e-19

34.93

Show/hide

Query:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---
        G NFM +SLT ENS   QNGQ VA+FD AD+T+YYKCRFL                                VMFQDCNIYAR+ +NS+TVT Q KD   
Subjt:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---

Query:  ----------------ELGVQKH---LLFSKPY--YHDFAGDNKFNDQELA-------------------------GASVSNRVNWPGFHVIDKRLAFSY
                        E+   K    +   +P+  Y +      F D  +A                         GA VS RVNW G+H++DK+ A  +
Subjt:  ----------------ELGVQKH---LLFSKPY--YHDFAGDNKFNDQELA-------------------------GASVSNRVNWPGFHVIDKRLAFSY

Query:  IVNNFIDES
         V+NFID S
Subjt:  IVNNFIDES

A0A5A7UNS3 Pectinesterase

1.0e-18

33.81

Show/hide

Query:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---
        G NFM +SLT ENS   QNGQ VA+FD AD+T+YYKCRFL                                VMFQDCNIYAR+ +NS+TVT Q KD   
Subjt:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---

Query:  ----------------ELGVQK---------------HLLFSKPYYHDFAGD----------------NKFNDQELAGASVSNRVNWPGFHVIDKRLAFS
                        E+   K               +++F + +  D                     +FN+    GA VS RVNW G+H+++K  AF 
Subjt:  ----------------ELGVQK---------------HLLFSKPYYHDFAGD----------------NKFNDQELAGASVSNRVNWPGFHVIDKRLAFS

Query:  YIVNNFIDES
        + V+NFI+ S
Subjt:  YIVNNFIDES

A0A5D3BM28 Pectinesterase

6.0e-19

33.81

Show/hide

Query:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---
        G NFM +SLT ENS   QNGQ VA+FD AD+T+YYKCRFL                                VMFQDCNIYAR+ +NS+TVT Q KD   
Subjt:  GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS-----------------------------ELVMFQDCNIYARIINNSVTVTTQLKD---

Query:  ----------------ELGVQK---------------HLLFSKPYYHDFAGD----------------NKFNDQELAGASVSNRVNWPGFHVIDKRLAFS
                        E+   K               +++F + +  D                     +FN+    GA VS RVNW G+H+++K  AF 
Subjt:  ----------------ELGVQK---------------HLLFSKPYYHDFAGD----------------NKFNDQELAGASVSNRVNWPGFHVIDKRLAFS

Query:  YIVNNFIDES
        + V+NFI+ S
Subjt:  YIVNNFIDES

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G05620.1 Plant invertase/pectin methylesterase inhibitor superfamily

2.4e-04

59.26

Show/hide

Query:  SNRVNWPGFHVIDKRLAFSYIVNNFID
        S RV WPG+H++DKR A S+ V +FID
Subjt:  SNRVNWPGFHVIDKRLAFSYIVNNFID

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTCGGCAAAAATTTCATGACACAATCATTGACTCTTGAAAACTCAACCAGATCCCAAAATGGTCAAGTAGTGGCGATCTTTGACTATGCCGACTATACTTCATACTA
CAAGTGCAGATTTTTAAGTGAACTTGTTATGTTCCAAGACTGCAATATATACGCTAGGATAATCAATAATTCTGTCACTGTTACGACACAGTTAAAAGACGAACTAGGTG
TCCAAAAGCATCTTCTCTTTTCAAAACCGTACTATCACGATTTTGCAGGAGATAACAAGTTTAACGATCAAGAGTTGGCCGGTGCTAGTGTCTCGAACAGAGTTAATTGG
CCAGGTTTTCATGTAATTGATAAACGATTAGCCTTTAGTTATATTGTAAACAACTTTATTGACGAATCTGGGTTGAGATCTAGAGGGTATGCCAGTTTTGGGCAAGTTTT
GGGCAGCCAAGTAGATCTGTCAATGAAGTTATTTATAGTATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVGKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLSELVMFQDCNIYARIINNSVTVTTQLKDELGVQKHLLFSKPYYHDFAGDNKFNDQELAGASVSNRVNW
PGFHVIDKRLAFSYIVNNFIDESGLRSRGYASFGQVLGSQVDLSMKLFIV

Lsi02G004530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome