; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G004650 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G004650
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionZinc finger CCCH domain-containing protein 43
Genome locationchr02:3897490..3899170
RNA-Seq ExpressionLsi02G004650
SyntenyLsi02G004650
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000571 - Zinc finger, CCCH-type
IPR036855 - Zinc finger, CCCH-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055296.1 zinc finger CCCH domain-containing protein 43 [Cucumis melo var. makuwa]2.3e-7586.21Show/hide
Query:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN
        MEPSEAVSVPNHC+AP SGFQSSQ HSSV DP PFDAQ V TDDRIHAELQKLDLKDEKE+ VKDFD+GGEWEV KNP EDEGNDTKKIDE+DRDRSVRN
Subjt:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN

Query:  DEDDDDDDVDEEGDA--GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS
        D+DD  DDVDEE DA  GDGGEVE+KGDWR +SNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ +S
Subjt:  DEDDDDDDVDEEGDA--GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS

XP_004152505.1 zinc finger CCCH domain-containing protein 43 [Cucumis sativus]2.5e-7485.63Show/hide
Query:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN
        MEPSEAVSVPNHC+AP S FQSSQ HSSV DP PFDAQ V TDDRIHAELQKLDLKDEKE+ VKDFD GGEWEV KNP EDEGNDTKKIDE+DRDRSVRN
Subjt:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN

Query:  DEDDDDDDVDEEGDA--GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS
        D+DDD DDVDEE DA  GDGGEVE+KGDWR +SNQYPVRP+AEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ +S
Subjt:  DEDDDDDDVDEEGDA--GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS

XP_008439243.1 PREDICTED: zinc finger CCCH domain-containing protein 43 [Cucumis melo]3.9e-7585.23Show/hide
Query:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN
        MEPSEAVSVPNHC+AP SGFQSSQ HSSV DP PFDAQ V TDDRIHAELQKLDLKDEKE+ VKDFD+GGEWEV KNP EDEGNDTKKIDE+DRDRSVRN
Subjt:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN

Query:  DEDDDDDDVDEEGDA----GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS
        D+DD  DDVDEE DA    GDGGEVE+KGDWR +SNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ +S
Subjt:  DEDDDDDDVDEEGDA----GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS

XP_022923806.1 zinc finger CCCH domain-containing protein 43 [Cucurbita moschata]2.4e-6478.03Show/hide
Query:  MEPSEAVSVPNHCQAPASGFQ-SSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVR
        MEPSEAVS+PNHC+  AS FQ SSQF SSVLDP       VATDDRIHAELQ+LDLKDEKE+TVKDFD+GGEWEV KNP E EGND KKI ESDRDRSVR
Subjt:  MEPSEAVSVPNHCQAPASGFQ-SSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVR

Query:  NDEDDDDDDVDEEGDAGDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS
        ND+ DDDDD + +   GDGGEVE KGDWR ++NQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHP+RKKNQ +S
Subjt:  NDEDDDDDDVDEEGDAGDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS

XP_038894675.1 zinc finger CCCH domain-containing protein 43 [Benincasa hispida]6.0e-7686.71Show/hide
Query:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN
        ME SEAVSVPNHC+A ASGFQSSQFHSSVLDPAPFDA+ VA DDRIHAELQ LDLKD+KE+TVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN
Subjt:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN

Query:  DEDDD-DDDVDEEGDAGDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS
        ++DDD DD+VD     GDGGEVEKKGDWR RSNQYP+RPEAEDCAFYLKTGTCKFGSFCKFNHP RKKNQ +S
Subjt:  DEDDD-DDDVDEEGDAGDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS

TrEMBL top hitse value%identityAlignment
A0A0A0LU93 Uncharacterized protein1.2e-7485.63Show/hide
Query:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN
        MEPSEAVSVPNHC+AP S FQSSQ HSSV DP PFDAQ V TDDRIHAELQKLDLKDEKE+ VKDFD GGEWEV KNP EDEGNDTKKIDE+DRDRSVRN
Subjt:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN

Query:  DEDDDDDDVDEEGDA--GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS
        D+DDD DDVDEE DA  GDGGEVE+KGDWR +SNQYPVRP+AEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ +S
Subjt:  DEDDDDDDVDEEGDA--GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS

A0A1S3AYA6 zinc finger CCCH domain-containing protein 431.9e-7585.23Show/hide
Query:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN
        MEPSEAVSVPNHC+AP SGFQSSQ HSSV DP PFDAQ V TDDRIHAELQKLDLKDEKE+ VKDFD+GGEWEV KNP EDEGNDTKKIDE+DRDRSVRN
Subjt:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN

Query:  DEDDDDDDVDEEGDA----GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS
        D+DD  DDVDEE DA    GDGGEVE+KGDWR +SNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ +S
Subjt:  DEDDDDDDVDEEGDA----GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS

A0A5A7ULY8 Zinc finger CCCH domain-containing protein 431.1e-7586.21Show/hide
Query:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN
        MEPSEAVSVPNHC+AP SGFQSSQ HSSV DP PFDAQ V TDDRIHAELQKLDLKDEKE+ VKDFD+GGEWEV KNP EDEGNDTKKIDE+DRDRSVRN
Subjt:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN

Query:  DEDDDDDDVDEEGDA--GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS
        D+DD  DDVDEE DA  GDGGEVE+KGDWR +SNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ +S
Subjt:  DEDDDDDDVDEEGDA--GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS

A0A5D3BHG2 Zinc finger CCCH domain-containing protein 431.9e-7585.23Show/hide
Query:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN
        MEPSEAVSVPNHC+AP SGFQSSQ HSSV DP PFDAQ V TDDRIHAELQKLDLKDEKE+ VKDFD+GGEWEV KNP EDEGNDTKKIDE+DRDRSVRN
Subjt:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN

Query:  DEDDDDDDVDEEGDA----GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS
        D+DD  DDVDEE DA    GDGGEVE+KGDWR +SNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ +S
Subjt:  DEDDDDDDVDEEGDA----GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS

E5GBX3 Nucleic acid binding protein1.9e-7585.23Show/hide
Query:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN
        MEPSEAVSVPNHC+AP SGFQSSQ HSSV DP PFDAQ V TDDRIHAELQKLDLKDEKE+ VKDFD+GGEWEV KNP EDEGNDTKKIDE+DRDRSVRN
Subjt:  MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRN

Query:  DEDDDDDDVDEEGDA----GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS
        D+DD  DDVDEE DA    GDGGEVE+KGDWR +SNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ +S
Subjt:  DEDDDDDDVDEEGDA----GDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS

SwissProt top hitse value%identityAlignment
Q2R4J4 Zinc finger CCCH domain-containing protein 634.7e-0766.67Show/hide
Query:  YPVRPEAEDCAFYLKTGTCKFGSFCKFNHP
        YP+RP  ++CA+YL+TG CKFGS CKF+HP
Subjt:  YPVRPEAEDCAFYLKTGTCKFGSFCKFNHP

Q5JLB5 Zinc finger CCCH domain-containing protein 121.0e-0663.33Show/hide
Query:  YPVRPEAEDCAFYLKTGTCKFGSFCKFNHP
        YP+RP  ++CA+YLKTG CK+G+ CKF+HP
Subjt:  YPVRPEAEDCAFYLKTGTCKFGSFCKFNHP

Q5RJC5 Zinc finger CCCH domain-containing protein 671.5e-0841.98Show/hide
Query:  IDESDRDRSVRNDEDDDDDDVDEEGDAGDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ
        +D+S ++ SV       + + D     G   + E++G  +     YPVRP++EDC+FY++TG+CK+GS CKFNHPVR+K Q
Subjt:  IDESDRDRSVRNDEDDDDDDVDEEGDAGDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ

Q8GXX7 Zinc finger CCCH domain-containing protein 331.8e-0658.82Show/hide
Query:  RSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHP
        R N +P RP   +C FY+KTG CKFG+ CKF+HP
Subjt:  RSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHP

Q9SQU4 Zinc finger CCCH domain-containing protein 341.8e-0661.29Show/hide
Query:  YPVRPEAEDCAFYLKTGTCKFGSFCKFNHPV
        YP+RP  ++C++YL+TG CKFG  C+FNHPV
Subjt:  YPVRPEAEDCAFYLKTGTCKFGSFCKFNHPV

Arabidopsis top hitse value%identityAlignment
AT3G02830.1 zinc finger protein 11.3e-0758.82Show/hide
Query:  RSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHP
        R N +P RP   +C FY+KTG CKFG+ CKF+HP
Subjt:  RSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHP

AT3G06410.1 Zinc finger C-x8-C-x5-C-x3-H type family protein1.3e-0761.29Show/hide
Query:  YPVRPEAEDCAFYLKTGTCKFGSFCKFNHPV
        YP+RP  ++C++YL+TG CKFG  C+FNHPV
Subjt:  YPVRPEAEDCAFYLKTGTCKFGSFCKFNHPV

AT5G16540.2 zinc finger nuclease 31.3e-0758.82Show/hide
Query:  RSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHP
        R N +P RP   +C FY+KTG CKFG+ CKF+HP
Subjt:  RSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHP

AT5G63260.1 Zinc finger C-x8-C-x5-C-x3-H type family protein1.0e-0941.98Show/hide
Query:  IDESDRDRSVRNDEDDDDDDVDEEGDAGDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ
        +D+S ++ SV       + + D     G   + E++G  +     YPVRP++EDC+FY++TG+CK+GS CKFNHPVR+K Q
Subjt:  IDESDRDRSVRNDEDDDDDDVDEEGDAGDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ

AT5G63260.2 Zinc finger C-x8-C-x5-C-x3-H type family protein8.0e-1040.7Show/hide
Query:  IDESDRDRSVRNDEDDDDDDVDEEGDAGDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYISAL
        +D+S ++ SV       + + D     G   + E++G  +     YPVRP++EDC+FY++TG+CK+GS CKFNHPVR+K Q +  L
Subjt:  IDESDRDRSVRNDEDDDDDDVDEEGDAGDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYISAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCTTCTGAAGCTGTTTCGGTCCCTAATCACTGTCAAGCACCGGCTTCTGGGTTTCAATCCTCACAGTTTCATAGTTCTGTTCTTGATCCTGCACCATTTGATGC
ACAGCGTGTAGCCACAGATGATCGCATCCATGCAGAACTTCAGAAATTGGATTTGAAGGATGAGAAAGAGAAAACCGTGAAAGATTTTGATGAAGGTGGAGAATGGGAAG
TTGCGAAGAATCCCTGTGAAGATGAAGGAAATGATACGAAGAAGATCGATGAAAGTGATCGAGATAGAAGCGTTCGGAATGACGAGGATGATGACGATGATGATGTCGAT
GAGGAGGGTGATGCAGGCGACGGCGGTGAGGTGGAAAAGAAAGGGGATTGGAGAGCCAGAAGCAACCAGTACCCAGTACGGCCTGAGGCTGAGGATTGTGCCTTTTACCT
TAAAACTGGGACTTGCAAGTTCGGATCATTTTGCAAATTCAATCACCCTGTGCGAAAGAAGAACCAGTACATTTCTGCATTAACTTTGTCTAGTTTTGATTACAAACATA
TAAAAAAATCGTTGAAAGAATTAGAAGTGCAAATGAGGAGGGCCAAGTCCAACCTATTGGAGATTGCAAAGACAACCCCAATTGTAACGTGTGTCAGCCTGCTTAGTTTT
GTCCGAGCTGAGACTTTCCTGTTTTCGGTGCGTTGGTATCCGTCCATCTCTTGTTCCATCATTAAGAATAAAGTTAAAATTTGCAGAGGACTGTGTGGTTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAACCTTGGGATGGAAACTCCTCTCTTTTAATGGCTTCATAATTTTATTTACAATTTTTTTGGTAAAAGAATAAAATACAATCCACCCCAATTCACTTTCCAATCCA
ATATTGTCAAAGCACCCCACGAATTGTCTAGAAGAAAAGAAAAAAGAAAAAAAAAATGAAAATTTGAAAATTGTTTAGAGAGAGGCAGAGCAAACGTACGCAGTGCAGAA
AGTAACCTTTTTTTTGTGCAACTTTTCTTGTGTTTAGTTCTCACTAGCAATTAGCGTCAACCCAATTGCTATTTGCTACAAAAGTTTATTTTTACACTACACCCATTTCT
CCATGTACTTTTATTCTCTGTAGCTAGGGTTTTTTGGGTTCAAATGTGAAGCAGAATGGAACCTTCTGAAGCTGTTTCGGTCCCTAATCACTGTCAAGCACCGGCTTCTG
GGTTTCAATCCTCACAGTTTCATAGTTCTGTTCTTGATCCTGCACCATTTGATGCACAGCGTGTAGCCACAGATGATCGCATCCATGCAGAACTTCAGAAATTGGATTTG
AAGGATGAGAAAGAGAAAACCGTGAAAGATTTTGATGAAGGTGGAGAATGGGAAGTTGCGAAGAATCCCTGTGAAGATGAAGGAAATGATACGAAGAAGATCGATGAAAG
TGATCGAGATAGAAGCGTTCGGAATGACGAGGATGATGACGATGATGATGTCGATGAGGAGGGTGATGCAGGCGACGGCGGTGAGGTGGAAAAGAAAGGGGATTGGAGAG
CCAGAAGCAACCAGTACCCAGTACGGCCTGAGGCTGAGGATTGTGCCTTTTACCTTAAAACTGGGACTTGCAAGTTCGGATCATTTTGCAAATTCAATCACCCTGTGCGA
AAGAAGAACCAGTACATTTCTGCATTAACTTTGTCTAGTTTTGATTACAAACATATAAAAAAATCGTTGAAAGAATTAGAAGTGCAAATGAGGAGGGCCAAGTCCAACCT
ATTGGAGATTGCAAAGACAACCCCAATTGTAACGTGTGTCAGCCTGCTTAGTTTTGTCCGAGCTGAGACTTTCCTGTTTTCGGTGCGTTGGTATCCGTCCATCTCTTGTT
CCATCATTAAGAATAAAGTTAAAATTTGCAGAGGACTGTGTGGTTCTTAG
Protein sequenceShow/hide protein sequence
MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRNDEDDDDDDVD
EEGDAGDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYISALTLSSFDYKHIKKSLKELEVQMRRAKSNLLEIAKTTPIVTCVSLLSF
VRAETFLFSVRWYPSISCSIIKNKVKICRGLCGS