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Lsi02G004670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G004670
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRPM1-interacting protein 4-like
Genome locationchr02:3902718..3907390
RNA-Seq ExpressionLsi02G004670
SyntenyLsi02G004670
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055297.1 RPM1-interacting protein 4 isoform X1 [Cucumis melo var. makuwa]3.7e-3292.11Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQRGGFAVVEATVVSRS
        +D+GRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVP++RNEPVFNNES+PQRGGFAVVEATVVS S
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQRGGFAVVEATVVSRS

KAE8652616.1 hypothetical protein Csa_013594 [Cucumis sativus]2.8e-2491.8Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQ
        +DKGR LPKFG+WDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQ+RNEPVFNNES+PQ
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQ

TYJ99221.1 RPM1-interacting protein 4 isoform X1 [Cucumis melo var. makuwa]1.4e-3190.79Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQRGGFAVVEATVVSRS
        +D+GRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG AANMVP++RNEPVFNNES+PQRGGFAVVEATVVS S
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQRGGFAVVEATVVSRS

XP_004152507.2 protein NOI4 [Cucumis sativus]1.3e-2493.44Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQ
        QDKGR LPKFG+WDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQ+RNEPVFNNES+PQ
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQ

XP_008439256.1 PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo]1.7e-2491.8Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQ
        QD+GRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG AANMVP++RNEPVFNNES+PQ
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQ

TrEMBL top hitse value%identityAlignment
A0A0A0LRE5 AvrRpt-cleavage domain-containing protein6.1e-2593.44Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQ
        QDKGR LPKFG+WDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQ+RNEPVFNNES+PQ
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQ

A0A1S3AYE6 RPM1-interacting protein 4 isoform X23.0e-2491.67Show/hide
Query:  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQ
        D+GRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG AANMVP++RNEPVFNNES+PQ
Subjt:  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQ

A0A1S3AZ04 RPM1-interacting protein 4 isoform X18.0e-2591.8Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQ
        QD+GRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG AANMVP++RNEPVFNNES+PQ
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQ

A0A5A7UL43 RPM1-interacting protein 4 isoform X11.8e-3292.11Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQRGGFAVVEATVVSRS
        +D+GRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVP++RNEPVFNNES+PQRGGFAVVEATVVS S
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQRGGFAVVEATVVSRS

A0A5D3BKG8 RPM1-interacting protein 4 isoform X16.8e-3290.79Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQRGGFAVVEATVVSRS
        +D+GRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG AANMVP++RNEPVFNNES+PQRGGFAVVEATVVS S
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQRGGFAVVEATVVSRS

SwissProt top hitse value%identityAlignment
O22633 Protein NOI41.8e-1392.11Show/hide
Query:  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG
        DKGRPLPKFGEWDVN+PASAEGFTVIFNKAR+EKKT G
Subjt:  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG

Q8GYN5 RPM1-interacting protein 43.0e-0537.97Show/hide
Query:  GEGKDRDR-KKYELGDPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKT----TGTAANMVPQQRNEPVFNNES
        G GK R +       +  +K   +PKFG+WD NNP+SA+G+T IFNK R E+ +    +G++     Q    P  NN S
Subjt:  GEGKDRDR-KKYELGDPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKT----TGTAANMVPQQRNEPVFNNES

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein3.7e-1468.52Show/hide
Query:  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFN
        DKGRPLPKFGEWDVN+P+SAEGFTVIFNKARNEKK  G + +     ++EP +N
Subjt:  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFN

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein1.3e-1492.11Show/hide
Query:  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG
        DKGRPLPKFGEWDVN+PASAEGFTVIFNKAR+EKKT G
Subjt:  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein7.4e-1587.8Show/hide
Query:  DPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG
        D +DKGRPLPKFGEWDVN+PASAEGFTVIFNKAR+EKKT G
Subjt:  DPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein7.4e-1587.8Show/hide
Query:  DPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG
        D +DKGRPLPKFGEWDVN+PASAEGFTVIFNKAR+EKKT G
Subjt:  DPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG

AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein1.4e-1367.27Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKT---TGTAAN-MVPQQRNE
        ++KG+PLPKFGEWDVNNPASAEGFTVIF+KA +EKKT   +G   N +V  QRN+
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKT---TGTAAN-MVPQQRNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGCAATTTGGGAAGAGCGGGAACCGATGGGCGAAGGAAAGGACAGAGACCGGAAGAAATACGAGCTTGGGGACCCGCAGGACAAGGGTCGTCCATTGCCAAAGTT
TGGTGAATGGGATGTAAATAATCCTGCATCAGCAGAAGGATTTACAGTCATATTTAACAAGGCTAGAAATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTCCCTC
AACAAAGAAATGAACCTGTCTTCAACAATGAAAGTTTCCCTCAAAGAGGTGGTTTTGCTGTGGTTGAAGCCACAGTGGTTTCAAGATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGCAATTTGGGAAGAGCGGGAACCGATGGGCGAAGGAAAGGACAGAGACCGGAAGAAATACGAGCTTGGGGACCCGCAGGACAAGGGTCGTCCATTGCCAAAGTT
TGGTGAATGGGATGTAAATAATCCTGCATCAGCAGAAGGATTTACAGTCATATTTAACAAGGCTAGAAATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTCCCTC
AACAAAGAAATGAACCTGTCTTCAACAATGAAAGTTTCCCTCAAAGAGGTGGTTTTGCTGTGGTTGAAGCCACAGTGGTTTCAAGATCTTGAATTTATGCAATATCTTAA
AGCCCGTAAAATTTTGCAGCCTTATCCAACCAACCGCGGACCTTTGACTCTGAGCCCCAACAAAGTTGTTGCACCAACAAATGACTCATACTATTCCTTTTCCCTTTTCA
CTTTGGCTTTCATGCTTTATCGATGTTATATAATAATTTATATCACATGGTACTCAGTTTATATGTAATGTAATACAGGATGGAAAAGACAAATTACAATGTCAAAATCG
CGTTTCAATTTC
Protein sequenceShow/hide protein sequence
MLAIWEEREPMGEGKDRDRKKYELGDPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQRGGFAVVEATVVSRS