; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G004730 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G004730
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description30S ribosomal protein S21
Genome locationchr02:3933638..3935937
RNA-Seq ExpressionLsi02G004730
SyntenyLsi02G004730
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001911 - Ribosomal protein S21
IPR038380 - Ribosomal protein S21 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055302.1 Ribosomal_S21 domain-containing protein [Cucumis melo var. makuwa]2.3e-5262.5Show/hide
Query:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK
        AAAATSS+T FFS LSISKSSQ+HHNSVS NFQSLPKSK  RL A+R +V  SSQEPKG  + I NYNVL+TVGENESEDQVVNRFR QVLRAGILQECK
Subjt:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKAREAAKRNRKRW-------------------------------------------------FRRPQSRAEEQSKQETPQRKNRDE
        RRRFFENSQAKRKRKAREAAKRNRKR                                                  FRRPQS  E+Q  ++TP+ KN+DE
Subjt:  RRRFFENSQAKRKRKAREAAKRNRKRW-------------------------------------------------FRRPQSRAEEQSKQETPQRKNRDE

Query:  EDDNWDFYQVDLPYCS
        EDDNWDFYQVDLPY S
Subjt:  EDDNWDFYQVDLPYCS

TYJ99226.1 putative Ribosomal protein S21 family protein [Cucumis melo var. makuwa]2.3e-5262.5Show/hide
Query:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK
        AAAATSS+T FFS LSISKSSQ+HHNSVS NFQSLPKSK  RL A+R +V  SSQEPKG  + I NYNVL+TVGENESEDQVVNRFR QVLRAGILQECK
Subjt:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKAREAAKRNRKRW-------------------------------------------------FRRPQSRAEEQSKQETPQRKNRDE
        RRRFFENSQAKRKRKAREAAKRNRKR                                                  FRRPQS  E+Q  ++TP+ KN+DE
Subjt:  RRRFFENSQAKRKRKAREAAKRNRKRW-------------------------------------------------FRRPQSRAEEQSKQETPQRKNRDE

Query:  EDDNWDFYQVDLPYCS
        EDDNWDFYQVDLPY S
Subjt:  EDDNWDFYQVDLPYCS

XP_004152510.2 30S ribosomal protein S21, chloroplastic [Cucumis sativus]1.4e-5780.61Show/hide
Query:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGF-FTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK
        AAAATSS+T FFS LSISKSSQ+HHNSVS N QSLP SK  RL A+R +V  SSQEPKG     +NYN+L+TVGENESEDQVVNRFRRQVLRAGILQECK
Subjt:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGF-FTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPY
        RRRFFENSQAKRKRKAREAAKRNRKR FRRPQS   EQ  Q+TP+ KNRDEEDDNWDFYQVDLPY
Subjt:  RRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPY

XP_008439325.1 PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo]3.4e-5980.84Show/hide
Query:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK
        AAAATSS+T FFS LSISKSSQ+HHNSVS NFQSLPKSK  RL A+R +V  SSQEPKG  + I NYNVL+TVGENESEDQVVNRFR QVLRAGILQECK
Subjt:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPYCS
        RRRFFENSQAKRKRKAREAAKRNRKR FRRPQS  E+Q  ++TP+ KN+DEEDDNWDFYQVDLPY S
Subjt:  RRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPYCS

XP_038894121.1 30S ribosomal protein S21, chloroplastic-like [Benincasa hispida]8.6e-7190.42Show/hide
Query:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGIN-YNVLVTVGENESEDQVVNRFRRQVLRAGILQECK
        AAAATSSLTKFFSSLSISKSSQ+HHNSVS N QSLPKSKPARL ATR SVTPSSQEPKG F+G+  YNVL+TVGENESEDQ+VNRFRRQVLRAGILQECK
Subjt:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGIN-YNVLVTVGENESEDQVVNRFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPYCS
        RRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQ  ++TPQRKNRDEEDDNWDFYQVDLPYCS
Subjt:  RRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPYCS

TrEMBL top hitse value%identityAlignment
A0A0A0LWJ6 Uncharacterized protein6.9e-5880.61Show/hide
Query:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGF-FTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK
        AAAATSS+T FFS LSISKSSQ+HHNSVS N QSLP SK  RL A+R +V  SSQEPKG     +NYN+L+TVGENESEDQVVNRFRRQVLRAGILQECK
Subjt:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGF-FTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPY
        RRRFFENSQAKRKRKAREAAKRNRKR FRRPQS   EQ  Q+TP+ KNRDEEDDNWDFYQVDLPY
Subjt:  RRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPY

A0A1S3AZ70 uncharacterized protein LOC1034841451.6e-5980.84Show/hide
Query:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK
        AAAATSS+T FFS LSISKSSQ+HHNSVS NFQSLPKSK  RL A+R +V  SSQEPKG  + I NYNVL+TVGENESEDQVVNRFR QVLRAGILQECK
Subjt:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPYCS
        RRRFFENSQAKRKRKAREAAKRNRKR FRRPQS  E+Q  ++TP+ KN+DEEDDNWDFYQVDLPY S
Subjt:  RRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPYCS

A0A5A7UHJ6 Ribosomal_S21 domain-containing protein1.1e-5262.5Show/hide
Query:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK
        AAAATSS+T FFS LSISKSSQ+HHNSVS NFQSLPKSK  RL A+R +V  SSQEPKG  + I NYNVL+TVGENESEDQVVNRFR QVLRAGILQECK
Subjt:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKAREAAKRNRKRW-------------------------------------------------FRRPQSRAEEQSKQETPQRKNRDE
        RRRFFENSQAKRKRKAREAAKRNRKR                                                  FRRPQS  E+Q  ++TP+ KN+DE
Subjt:  RRRFFENSQAKRKRKAREAAKRNRKRW-------------------------------------------------FRRPQSRAEEQSKQETPQRKNRDE

Query:  EDDNWDFYQVDLPYCS
        EDDNWDFYQVDLPY S
Subjt:  EDDNWDFYQVDLPYCS

A0A5D3BJF5 Putative Ribosomal protein S21 family protein1.1e-5262.5Show/hide
Query:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK
        AAAATSS+T FFS LSISKSSQ+HHNSVS NFQSLPKSK  RL A+R +V  SSQEPKG  + I NYNVL+TVGENESEDQVVNRFR QVLRAGILQECK
Subjt:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKAREAAKRNRKRW-------------------------------------------------FRRPQSRAEEQSKQETPQRKNRDE
        RRRFFENSQAKRKRKAREAAKRNRKR                                                  FRRPQS  E+Q  ++TP+ KN+DE
Subjt:  RRRFFENSQAKRKRKAREAAKRNRKRW-------------------------------------------------FRRPQSRAEEQSKQETPQRKNRDE

Query:  EDDNWDFYQVDLPYCS
        EDDNWDFYQVDLPY S
Subjt:  EDDNWDFYQVDLPYCS

E5GBW8 Structural constituent of ribosome1.6e-5980.84Show/hide
Query:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK
        AAAATSS+T FFS LSISKSSQ+HHNSVS NFQSLPKSK  RL A+R +V  SSQEPKG  + I NYNVL+TVGENESEDQVVNRFR QVLRAGILQECK
Subjt:  AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPYCS
        RRRFFENSQAKRKRKAREAAKRNRKR FRRPQS  E+Q  ++TP+ KN+DEEDDNWDFYQVDLPY S
Subjt:  RRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPYCS

SwissProt top hitse value%identityAlignment
B0KA63 30S ribosomal protein S211.1e-0449.09Show/hide
Query:  VTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRK
        V VGENES D  + RFRRQ  +AG+L E ++R  +E+   KRK+K+  A KR  K
Subjt:  VTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRK

P82024 30S ribosomal protein S21, chloroplastic2.2e-1641.61Show/hide
Query:  SISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKA
        SIS SS+ H N+         +  P  L+A    V PS       +    YNV V V +NE+E++++NRFRR+V+RAG++QECKRRR+FEN Q ++KRK 
Subjt:  SISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKA

Query:  REAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPY
        REAAKRN +R  RR   R     K+E  +   ++++ DNWD  +   P+
Subjt:  REAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPY

Q2JM43 30S ribosomal protein S211.1e-0450Show/hide
Query:  VTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR
        VT+GENE  +  + RF+RQV +AGIL++ +  R FE +  KRKRKA  A +RNR++
Subjt:  VTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR

Q7NHA1 30S ribosomal protein S21 28.5e-0550Show/hide
Query:  VTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNR
        V +GENES +  + RF++++ +AGIL E KRR  +E   A+RKRKA  A KR R
Subjt:  VTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNR

Q8RB59 30S ribosomal protein S215.0e-0550.91Show/hide
Query:  VTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRK
        V VGENES D  + RFRRQ  +AG+L E ++R  +E+   KRK+KA  A KR  K
Subjt:  VTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRK

Arabidopsis top hitse value%identityAlignment
AT3G27160.1 Ribosomal protein S21 family protein1.5e-2047.86Show/hide
Query:  VTPSSQEPKGFFTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQE---TPQRK
        + PS       F    YNV V V +NESE+++VNRFRR+V+R G++QECKRRR+FEN Q ++KR+ R+AAKRN+K   RRPQ+R  +++++E     + K
Subjt:  VTPSSQEPKGFFTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQE---TPQRK

Query:  NRDEEDDNWDFYQVDLP
         +DEE+DNW+    D+P
Subjt:  NRDEEDDNWDFYQVDLP

AT5G63300.1 Ribosomal protein S21 family protein3.3e-1241.67Show/hide
Query:  FFTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFR-RPQSRAEEQSKQETPQRKNRDEEDDNWDF-
        FF    YNV V   + ESE+Q+VN F+R   RAG+LQE +RRRFFE+S  K+ RK +EAAK+ RKR    +P+  +  + ++        DE+DD+W+  
Subjt:  FFTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFR-RPQSRAEEQSKQETPQRKNRDEEDDNWDF-

Query:  -YQVDLPY
           +++PY
Subjt:  -YQVDLPY

AT5G63300.2 Ribosomal protein S21 family protein4.8e-1156.06Show/hide
Query:  FFTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR
        FF    YNV V   + ESE+Q+VN F+R   RAG+LQE +RRRFFE+S  K+ RK +EAAK+ RKR
Subjt:  FFTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGCCGCCGCAACATCATCTCTCACGAAGTTCTTCTCCTCCCTCTCAATCTCCAAATCATCACAATTACACCATAACTCCGTCTCTACAAATTTTCAGTCTCT
TCCAAAGTCTAAACCGGCTCGGTTGTTGGCCACCAGGGACTCTGTTACGCCTTCTTCCCAAGAACCCAAGGGTTTTTTTACAGGCATAAATTACAATGTTCTGGTCACCG
TGGGTGAGAACGAGTCTGAAGACCAGGTAGTGAATCGGTTCAGGAGGCAGGTCTTGAGAGCGGGGATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAAAATAGCCAG
GCGAAGAGAAAAAGGAAAGCTAGAGAAGCTGCTAAGAGGAATCGCAAGAGATGGTTTAGGAGGCCTCAATCAAGAGCTGAGGAGCAGTCAAAACAGGAAACCCCTCAGAG
GAAGAATAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACTGTTCATAG
mRNA sequenceShow/hide mRNA sequence
TGGCAGTTGCCCCAATTGATGGGCTCCATTCGACCGGCCCATGGTTGACCCCGCCCAGGCCCATTAGCAAAAGGTCCAAAACTCAAAACCCACGTTTCACCTGCGCGACT
TAGGCCCGGCCGCCGGTCCGTAGAGGAAGTGGAAGACGGACCACCGGTGAGTCGCCATGGCCGCCGCCGCCGCAACATCATCTCTCACGAAGTTCTTCTCCTCCCTCTCA
ATCTCCAAATCATCACAATTACACCATAACTCCGTCTCTACAAATTTTCAGTCTCTTCCAAAGTCTAAACCGGCTCGGTTGTTGGCCACCAGGGACTCTGTTACGCCTTC
TTCCCAAGAACCCAAGGGTTTTTTTACAGGCATAAATTACAATGTTCTGGTCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTAGTGAATCGGTTCAGGAGGCAGGTCT
TGAGAGCGGGGATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAAAATAGCCAGGCGAAGAGAAAAAGGAAAGCTAGAGAAGCTGCTAAGAGGAATCGCAAGAGATGG
TTTAGGAGGCCTCAATCAAGAGCTGAGGAGCAGTCAAAACAGGAAACCCCTCAGAGGAAGAATAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCC
ATACTGTTCATAGAAGAAGCTCAGTAATGTTTTTGGCTTAGAGCATCTTGCTGTTGATGTTAATGCCATTGAAGTTTTATTCTGCCCACCTCAAATGGATGTTTTTCAAT
AGTCTCTCTTCTACTTTGAAGTTGAACTGGTCTAGTTAGCAAGGCAGGAGGTCTGTTCTGAAAATGTAACAGCCAAGATGATTTTGTAGATGACTGTCAATTGCAAAGCT
TTGTTGTTTGCTGGAAAAGAAATTTAACAAATATGTTTTTTT
Protein sequenceShow/hide protein sequence
MAAAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQ
AKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPYCS