CuGenDBv2

Gene ID	Lsi02G005100
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein transport protein Sec61 subunit gamma
Genome location	chr02:4316239..4318699
RNA-Seq Expression	Lsi02G005100
Synteny	Lsi02G005100
Gene Ontology terms	GO:0031204 - posttranslational protein targeting to membrane, translocation (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0071261 - Ssh1 translocon complex (cellular component) GO:0008320 - protein transmembrane transporter activity (molecular function)
InterPro domains	IPR001901 - Protein translocase complex, SecE/Sec61-gamma subunit IPR008158 - Protein translocase SEC61 complex, gamma subunit IPR023391 - Protein translocase SecE domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

RWR75919.1 protein transport protein Sec61 subunit gamma [Cinnamomum micranthum f. kanehirae]

2.8e-28

98.55

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
        MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKL+FIPINNIIVGSG
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG

XP_008439824.1 PREDICTED: protein transport protein Sec61 subunit gamma [Cucumis melo]

2.2e-28

100

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
        MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG

XP_020163946.1 protein transport protein Sec61 subunit gamma [Aegilops tauschii subsp. strangulata]

2.8e-28

98.55

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
        MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVA+RTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG

XP_022137357.1 uncharacterized protein LOC111008832 isoform X1 [Momordica charantia]

2.2e-28

100

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
        MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG

XP_022137358.1 uncharacterized protein LOC111008832 isoform X2 [Momordica charantia]

2.2e-28

100

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
        MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG

TrEMBL top hits

e value

%identity

Alignment

A0A5D3BJ11 Protein transport protein Sec61 subunit gamma

1.0e-28

100

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
        MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG

A0A6J1C817 uncharacterized protein LOC111008832 isoform X1

1.0e-28

100

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
        MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG

A0A6J1CA50 uncharacterized protein LOC111008832 isoform X2

1.0e-28

100

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
        MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG

A0A6J1GT74 protein transport protein Sec61 subunit gamma

1.0e-28

100

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
        MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG

A0A6J1JW08 protein transport protein Sec61 subunit gamma

1.0e-28

100

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
        MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG

SwissProt top hits

e value

%identity

Alignment

P0DI74 Protein transport protein Sec61 subunit gamma-1

1.2e-29

94.12

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVG+
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS

P0DI75 Protein transport protein Sec61 subunit gamma-2

1.2e-29

94.12

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVG+
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS

P38385 Protein transport protein Sec61 subunit gamma

8.2e-31

98.55

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
        MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVA RTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG

Q7Z1B8 Protein transport protein Sec61 subunit gamma

7.0e-22

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS
        MD V   ++P R+FAKDS+RLVKRC KPDRKEF K+AV TAIGF +MGF+GFFVKLI IPINNIIVGS
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS

Q9SMP2 Protein transport protein Sec61 subunit gamma-3

8.5e-28

88.24

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS
        M+A+DS +DPLR+FAK SVRLV+RCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKL+FIPINNIIVGS
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS

Arabidopsis top hits

e value

%identity

Alignment

AT3G48570.1 secE/sec61-gamma protein transport protein

6.1e-29

88.24

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS
        M+A+DS +DPLR+FAK SVRLV+RCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKL+FIPINNIIVGS
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS

AT4G24920.1 secE/sec61-gamma protein transport protein

8.4e-31

94.12

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVG+
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS

AT5G50460.1 secE/sec61-gamma protein transport protein

8.4e-31

94.12

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Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVG+
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS

Sequences

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CDS sequence

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ATGGATGCCGTAGATTCAGTCGTTGATCCTCTCAGAGAGTTCGCCAAGGACAGCGTTCGTCTCGTTAAGAGATGTCATAAACCCGATCGCAAGGAATTCACCAAGGTTGC
CGTTCGTACCGCTATCGGCTTCGTTGTGATGGGATTTGTAGGGTTCTTTGTCAAGCTAATCTTCATTCCGATCAACAACATCATCGTTGGATCTGGTTAG

mRNA sequence

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GAGGGGTATTTCCGCGATTTCAAATATTGCGAGAGTGCATCAATTTTGACCCAATCATCCCTAGTCTCGCAGCGCTCAAAGTATTTCTTCCTTCCATATTAACCCCCACA
CCGCCACAACTCGTTCAAACCGGAAACCAAATTTCGCGAAAAACATTTCTTTTGTCGACGTTCCCTTCTCATCTCGGAGCCATGGATGCCGTAGATTCAGTCGTTGATCC
TCTCAGAGAGTTCGCCAAGGACAGCGTTCGTCTCGTTAAGAGATGTCATAAACCCGATCGCAAGGAATTCACCAAGGTTGCCGTTCGTACCGCTATCGGCTTCGTTGTGA
TGGGATTTGTAGGGTTCTTTGTCAAGCTAATCTTCATTCCGATCAACAACATCATCGTTGGATCTGGTTAGATTAGGTCATGATGAAGTACGTAGGTGATGTCGGCTGAC
GTTTACATTAAGTGCAATCTGTGTTCATTGAGGAATACTTAGCATTTAGCTCTCCTTTAGAACTTTAAAAAAAATTCGCGTGCATAAGTCGAGTAAACCCCAGGATATAT
GGAAAATTTTCTTGTCATGTTGATGAACTCACTCTATTTATATTTCAATGTTATAACATGTTCTTTTTATTAACTATTCGTTCGGAAATTTGTCGTTGAAGAAGTGTCTA
TATTCATGTTTATCGCATACTGCTAAATGCCAATAACTGTTTAGGAGGAGGAAGATCGATTGAGGAATTATCGAAATTCTTCAAGTTCATAAATTATTTTGTTTAGAAAC
CTGAGTTCTCTTTAAATGGACTTACCTTGGTAACCAA

Protein sequence

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MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG

Lsi02G005100 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome