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Lsi02G005280 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G005280
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCentromere protein S-like
Genome locationchr02:4586481..4588701
RNA-Seq ExpressionLsi02G005280
SyntenyLsi02G005280
Gene Ontology termsGO:0000712 - resolution of meiotic recombination intermediates (biological process)
GO:0006312 - mitotic recombination (biological process)
GO:0007129 - synapsis (biological process)
GO:0031297 - replication fork processing (biological process)
GO:0036297 - interstrand cross-link repair (biological process)
GO:0043240 - Fanconi anaemia nuclear complex (cellular component)
GO:0071821 - FANCM-MHF complex (cellular component)
GO:0003682 - chromatin binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR009072 - Histone-fold
IPR029003 - CENP-S/Mhf1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004154006.1 protein MHF1 homolog isoform X2 [Cucumis sativus]1.2e-4493.4Show/hide
Query:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL
        METGMEEDDSASELLRDRFRLS+ISIAEAEA +SGMEISEPVMTCVADLAFKY T+QLAKDLELF QHAGRKSVNTEDVIL+AHRNEHLAAILTSICNDL
Subjt:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL

Query:  KTKEPQ
        KTKEPQ
Subjt:  KTKEPQ

XP_008440142.1 PREDICTED: centromere protein S isoform X1 [Cucumis melo]1.1e-4593.4Show/hide
Query:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL
        MET MEEDDSASELLRDRFRLSTISIAEAEA +SGMEISEPVMTCVADLAFK+TTEQLAKDLELF QHAGRKSVNTEDVIL+AHRNEHLAAILTSICNDL
Subjt:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL

Query:  KTKEPQ
        K KEPQ
Subjt:  KTKEPQ

XP_011652290.1 protein MHF1 homolog isoform X1 [Cucumis sativus]3.5e-4795.28Show/hide
Query:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL
        METGMEEDDSASELLRDRFRLS+ISIAEAEA +SGMEISEPVMTCVADLAFKYTTEQLAKDLELF QHAGRKSVNTEDVIL+AHRNEHLAAILTSICNDL
Subjt:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL

Query:  KTKEPQ
        KTKEPQ
Subjt:  KTKEPQ

XP_022137214.1 protein MHF1 homolog [Momordica charantia]4.3e-4588.99Show/hide
Query:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL
        METG EEDD+A+ELL DRFRLSTISIAEAEAKR+GMEISEPVMTCVA+LAFKYTTEQLAKDLELF QHAGRKSVNTEDVILSAHRNEHLAA LTS CNDL
Subjt:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL

Query:  KTKEPQVNK
        KTKEPQ  +
Subjt:  KTKEPQVNK

XP_038894698.1 protein MHF1 homolog isoform X1 [Benincasa hispida]1.0e-4695.28Show/hide
Query:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL
        M+TG+EED SASELLRDRFRLSTISIAEAEA RSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHL+AILTSICNDL
Subjt:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL

Query:  KTKEPQ
        KTKEPQ
Subjt:  KTKEPQ

TrEMBL top hitse value%identityAlignment
A0A0A0LR97 Uncharacterized protein6.0e-4593.4Show/hide
Query:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL
        METGMEEDDSASELLRDRFRLS+ISIAEAEA +SGMEISEPVMTCVADLAFKY T+QLAKDLELF QHAGRKSVNTEDVIL+AHRNEHLAAILTSICNDL
Subjt:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL

Query:  KTKEPQ
        KTKEPQ
Subjt:  KTKEPQ

A0A1S3B159 centromere protein S isoform X15.4e-4693.4Show/hide
Query:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL
        MET MEEDDSASELLRDRFRLSTISIAEAEA +SGMEISEPVMTCVADLAFK+TTEQLAKDLELF QHAGRKSVNTEDVIL+AHRNEHLAAILTSICNDL
Subjt:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL

Query:  KTKEPQ
        K KEPQ
Subjt:  KTKEPQ

A0A5A7UM53 Centromere protein S isoform X15.4e-4693.4Show/hide
Query:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL
        MET MEEDDSASELLRDRFRLSTISIAEAEA +SGMEISEPVMTCVADLAFK+TTEQLAKDLELF QHAGRKSVNTEDVIL+AHRNEHLAAILTSICNDL
Subjt:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL

Query:  KTKEPQ
        K KEPQ
Subjt:  KTKEPQ

A0A5D3BHQ8 Centromere protein S isoform X21.9e-4391.51Show/hide
Query:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL
        MET MEEDDSASELLRDRFRLSTISIAEAEA +SGMEISEPVMTCVADLAFK+ T+QLAKDLELF QHAGRKSVNTEDVIL+AHRNEHLAAILTSICNDL
Subjt:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL

Query:  KTKEPQ
        K KEPQ
Subjt:  KTKEPQ

A0A6J1C623 protein MHF1 homolog2.1e-4588.99Show/hide
Query:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL
        METG EEDD+A+ELL DRFRLSTISIAEAEAKR+GMEISEPVMTCVA+LAFKYTTEQLAKDLELF QHAGRKSVNTEDVILSAHRNEHLAA LTS CNDL
Subjt:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL

Query:  KTKEPQVNK
        KTKEPQ  +
Subjt:  KTKEPQVNK

SwissProt top hitse value%identityAlignment
O74807 Inner kinetochore subunit mhf12.9e-0432.65Show/hide
Query:  DRFRLSTISIAEAEAKRSGMEI--SEPVMTCVADLAFKYTTEQ-------LAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICND-LKTKE
        +RF+     + +    R+  E+  SE     V +L     TE        LAKD+E F +HAGRK+V  +DV+L   RNE L  I+ +   + +K+K+
Subjt:  DRFRLSTISIAEAEAKRSGMEI--SEPVMTCVADLAFKYTTEQ-------LAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICND-LKTKE

Q2TBR7 Centromere protein S1.0e-0434.67Show/hide
Query:  IAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL
        + E  A    M+ S+  +  ++++ F    E  AKDLE+F +HA R ++NTEDV L A R+  L   +T    D+
Subjt:  IAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDL

Q6NRI8 Centromere protein S3.4e-0528.95Show/hide
Query:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTS-----
        M  G EE  S ++ L+        S+ +  A    ++ S+  +  ++++ F+   E  AKDLE+F +HA R ++N +DV L A R+  L A ++      
Subjt:  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTS-----

Query:  ICNDLKTKEPQVNK
          N L+ KE +  K
Subjt:  ICNDLKTKEPQVNK

Q8N2Z9 Centromere protein S7.6e-0532.26Show/hide
Query:  ETGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILT
        ET  ++  S  + L+     +   + E  A    M+ S+  +  +++L F+   E  AKDLE+F +HA R ++NTEDV L A R+  L   +T
Subjt:  ETGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILT

Q9FI55 Protein MHF1 homolog6.6e-3358.78Show/hide
Query:  PNAVNCESRSLCSAMETGME-----------EDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVN
        P     +  S C AM+ G E           E+ S  +L+RDRFRLS ISIAEAEAK++GMEI  PV+ CVADLAFKY  E +AKDLELF  HAGRK VN
Subjt:  PNAVNCESRSLCSAMETGME-----------EDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVN

Query:  TEDVILSAHRNEHLAAILTSICNDLKTKEPQ
         +DV+LSAHRN++LAA L S+CN+LK KEPQ
Subjt:  TEDVILSAHRNEHLAAILTSICNDLKTKEPQ

Arabidopsis top hitse value%identityAlignment
AT5G50930.1 Histone superfamily protein4.7e-3458.78Show/hide
Query:  PNAVNCESRSLCSAMETGME-----------EDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVN
        P     +  S C AM+ G E           E+ S  +L+RDRFRLS ISIAEAEAK++GMEI  PV+ CVADLAFKY  E +AKDLELF  HAGRK VN
Subjt:  PNAVNCESRSLCSAMETGME-----------EDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVN

Query:  TEDVILSAHRNEHLAAILTSICNDLKTKEPQ
         +DV+LSAHRN++LAA L S+CN+LK KEPQ
Subjt:  TEDVILSAHRNEHLAAILTSICNDLKTKEPQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCAGTGACAGTGCCGCCAAATGCAGTAAATTGTGAATCCAGAAGCCTCTGCTCTGCAATGGAAACTGGGATGGAAGAAGACGACTCCGCCTCCGAACTCTTGAG
GGACAGATTCCGACTCTCCACCATTTCTATCGCTGAAGCTGAAGCGAAGAGAAGCGGCATGGAAATTTCTGAACCCGTGATGACTTGTGTCGCTGATTTAGCCTTCAAAT
ATACAACAGAACAGTTGGCGAAGGACCTTGAGTTATTTGTTCAGCATGCTGGTCGGAAATCTGTGAATACAGAAGATGTAATACTATCAGCCCATAGAAATGAGCATTTG
GCTGCCATATTAACATCCATCTGCAATGATCTAAAGACTAAAGAACCTCAAGTTAACAAGGGTGCATACCAACAAGCGATGGCAATAGCTTATGATTTCTTTCCTTTTCT
TGGTTATACTAACTAG
mRNA sequenceShow/hide mRNA sequence
CGTCGCCAGTGGCATTTCTGGAGGGAAATAAAGGCGGATGGAAGCAGTGACAGTGCCGCCAAATGCAGTAAATTGTGAATCCAGAAGCCTCTGCTCTGCAATGGAAACTG
GGATGGAAGAAGACGACTCCGCCTCCGAACTCTTGAGGGACAGATTCCGACTCTCCACCATTTCTATCGCTGAAGCTGAAGCGAAGAGAAGCGGCATGGAAATTTCTGAA
CCCGTGATGACTTGTGTCGCTGATTTAGCCTTCAAATATACAACAGAACAGTTGGCGAAGGACCTTGAGTTATTTGTTCAGCATGCTGGTCGGAAATCTGTGAATACAGA
AGATGTAATACTATCAGCCCATAGAAATGAGCATTTGGCTGCCATATTAACATCCATCTGCAATGATCTAAAGACTAAAGAACCTCAAGTTAACAAGGGTGCATACCAAC
AAGCGATGGCAATAGCTTATGATTTCTTTCCTTTTCTTGGTTATACTAACTAG
Protein sequenceShow/hide protein sequence
MEAVTVPPNAVNCESRSLCSAMETGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHL
AAILTSICNDLKTKEPQVNKGAYQQAMAIAYDFFPFLGYTN