; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G005660 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G005660
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionserine/arginine repetitive matrix protein 1-like
Genome locationchr02:5016016..5018604
RNA-Seq ExpressionLsi02G005660
SyntenyLsi02G005660
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022954810.1 serine/arginine repetitive matrix protein 1-like [Cucurbita moschata]9.0e-7652.48Show/hide
Query:  LIRGIISPPRSRSSPREGKP-HNNVPINPPSKPTSKKPNNNSK---NPN--RSHRKETQQPTTAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSSNPS
        ++RGIISPPRSRSSPRE +P +NN   NPPS+P    P        NPN  R+HRKE  QPT   RPTK  +     S+NP R +PS +P SKL  S P+
Subjt:  LIRGIISPPRSRSSPREGKP-HNNVPINPPSKPTSKKPNNNSK---NPN--RSHRKETQQPTTAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSSNPS

Query:  GHKKLDNNSTTKIHPSKQTR----------STPSKNSVKAGIASRSGSRSDLSSTAKPTAIAKD-------------------KYYFDSAGHSATLHDLH
             +    TK  P   TR          + PSK++ K   AS SGSRSD  S AKP+   K                    + Y D +  + TL D  
Subjt:  GHKKLDNNSTTKIHPSKQTR----------STPSKNSVKAGIASRSGSRSDLSSTAKPTAIAKD-------------------KYYFDSAGHSATLHDLH

Query:  VLEKLQRFSIDGKDLASIVLH-----ESMGSDTKEE--SSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKLSE
        V  KL + S+D KDLA+IVLH     ES+ S+TKEE  SS  +N SRMFQIYKEIASH Q NSSI SY TKL+ALWDEL     D P+CSC G+TEK SE
Subjt:  VLEKLQRFSIDGKDLASIVLH-----ESMGSDTKEE--SSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKLSE

Query:  YMEREKVMQFLVGLNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAHSNNRDNNDGVQGLVDSNNLDQEKQF
         +EREKVMQFL+GLNDSYS IC QIL   PFPTVEKA  AI+REEKRREL+++LE VA KVIQNNWL    QN HS N DN +     VD  NL Q+ + 
Subjt:  YMEREKVMQFLVGLNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAHSNNRDNNDGVQGLVDSNNLDQEKQF

Query:  DQNQVTRFPIEPLLIDLGSPVRC
        DQN+    PIEPLLIDLGSPVRC
Subjt:  DQNQVTRFPIEPLLIDLGSPVRC

XP_023542694.1 uncharacterized protein LOC111802521 [Cucurbita pepo subsp. pepo]1.5e-7552.12Show/hide
Query:  LIRGIISPPRSRSSPREGKP-HNNVPINPPSKPTSKKPNNN-----SKNPNRSHRKETQQPTTAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSSNPS
        ++RGIISPPRSRSSPRE +P +NN   NPPS+P    P        + N  R+HRKE  QPT   RPTK  +     S+NP R +PS +P SKLV S P+
Subjt:  LIRGIISPPRSRSSPREGKP-HNNVPINPPSKPTSKKPNNN-----SKNPNRSHRKETQQPTTAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSSNPS

Query:  ----GHKKLDNNSTTKI-------HPSKQTRSTPSKNSVKAGIASRSGSRSDLSSTAKPTAIAKD-------------------KYYFDSAGHSATLHDL
              +KLD  +  K         P+K     PSK++ K   AS SGSRSD  S AKP+   K                    + Y D +  + TL D 
Subjt:  ----GHKKLDNNSTTKI-------HPSKQTRSTPSKNSVKAGIASRSGSRSDLSSTAKPTAIAKD-------------------KYYFDSAGHSATLHDL

Query:  HVLEKLQRFSIDGKDLASIVLH-----ESMGSDTKEE--SSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKLS
         V  KL + S+D KDLA+IVLH     ES+ S+TKEE  SS  +N SRMFQIYKEIASH Q NSSI SY TKL+ALWDEL     D+P+CSC G+T+K S
Subjt:  HVLEKLQRFSIDGKDLASIVLH-----ESMGSDTKEE--SSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKLS

Query:  EYMEREKVMQFLVGLNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAHSNNRDNNDGVQGLVDSNNLDQEKQ
        E +EREKVMQFL+GL+DSYS IC QIL   PFPTVEKA  AI+REEKRREL+++LE VA KVIQNNWL    QN HS N DN +     VD  NL QE +
Subjt:  EYMEREKVMQFLVGLNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAHSNNRDNNDGVQGLVDSNNLDQEKQ

Query:  FDQNQVTRFPIEPLLIDLGSPVRC
         DQN+    PIEPLLIDLGSPVRC
Subjt:  FDQNQVTRFPIEPLLIDLGSPVRC

XP_038895285.1 GATA zinc finger domain-containing protein 11-like isoform X1 [Benincasa hispida]3.0e-10364.34Show/hide
Query:  VLIRGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAIRPTKNNNVNNTSS-NNPSRTNPSTKPTSKLVS-------S
        +++RGI+SPPR++ S      +N           + KPN  SKN      +E  +PTT IRPTKNNN N  SS NN SR NPS K TSKLVS       S
Subjt:  VLIRGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAIRPTKNNNVNNTSS-NNPSRTNPSTKPTSKLVS-------S

Query:  NPSGHKKLDNNSTTKI--HPSK---------QTRSTP-SKNSVKAGIASRSGSRSDLSSTAK----------PTAIAKDKYYFDSAGHSATLHDLHVLEK
        NP+G KKLD NSTTKI   PS          QTR TP SK +VK  IAS SGSRS+LSS  K          P  +  +  Y  SAGH ATLHDLHV ++
Subjt:  NPSGHKKLDNNSTTKI--HPSK---------QTRSTP-SKNSVKAGIASRSGSRSDLSSTAK----------PTAIAKDKYYFDSAGHSATLHDLHVLEK

Query:  LQRFSID----GKDLASIVLH-----ESMGSDTKEESSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKLSEYM
        LQR SID    GKDLA +VLH     ESMGSDTKE SSS SNDSRMFQIYKEIA HRQENSSI SYFTKLEALWDELAT  TDL QCSCGGATEKLSEYM
Subjt:  LQRFSID----GKDLASIVLH-----ESMGSDTKEESSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKLSEYM

Query:  EREKVMQFLVGLNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAH-SNNRDNNDGVQGLVDSNNLDQEKQFD
        EREKVMQFLVGLNDSYS ICNQILL+TPFPT+EKAY A+IREEK REL+V LE+VA KVIQNNWLDLQNQNAH SNN DNNDGVQ LVD +N   E+QFD
Subjt:  EREKVMQFLVGLNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAH-SNNRDNNDGVQGLVDSNNLDQEKQFD

Query:  Q
        Q
Subjt:  Q

XP_038895286.1 hybrid signal transduction histidine kinase L-like isoform X2 [Benincasa hispida]5.4e-10564.99Show/hide
Query:  VLIRGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAIRPTKNNNVNNTSS-NNPSRTNPSTKPTSKLVS-------S
        +++RGI+SPPR++ S      +N           + KPN  SKN      +E  +PTT IRPTKNNN N  SS NN SR NPS K TSKLVS       S
Subjt:  VLIRGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAIRPTKNNNVNNTSS-NNPSRTNPSTKPTSKLVS-------S

Query:  NPSGHKKLDNNSTTKI--HPSK---------QTRSTP-SKNSVKAGIASRSGSRSDLSSTAK----------PTAIAKDKYYFDSAGHSATLHDLHVLEK
        NP+G KKLD NSTTKI   PS          QTR TP SK +VK  IAS SGSRS+LSS  K          P  +  +  Y  SAGH ATLHDLHV ++
Subjt:  NPSGHKKLDNNSTTKI--HPSK---------QTRSTP-SKNSVKAGIASRSGSRSDLSSTAK----------PTAIAKDKYYFDSAGHSATLHDLHVLEK

Query:  LQRFSIDGKDLASIVLH-----ESMGSDTKEESSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKLSEYMEREK
        LQR SIDGKDLA +VLH     ESMGSDTKE SSS SNDSRMFQIYKEIA HRQENSSI SYFTKLEALWDELAT  TDL QCSCGGATEKLSEYMEREK
Subjt:  LQRFSIDGKDLASIVLH-----ESMGSDTKEESSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKLSEYMEREK

Query:  VMQFLVGLNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAH-SNNRDNNDGVQGLVDSNNLDQEKQFDQ
        VMQFLVGLNDSYS ICNQILL+TPFPT+EKAY A+IREEK REL+V LE+VA KVIQNNWLDLQNQNAH SNN DNNDGVQ LVD +N   E+QFDQ
Subjt:  VMQFLVGLNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAH-SNNRDNNDGVQGLVDSNNLDQEKQFDQ

XP_038895287.1 hybrid signal transduction histidine kinase L-like isoform X3 [Benincasa hispida]3.3e-10264.48Show/hide
Query:  VLIRGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAIRPTKNNNVNNTSS-NNPSRTNPSTKPTSKLVS-------S
        +++RGI+SPPR++ S      +N           + KPN  SKN      +E  +PTT IRPTKNNN N  SS NN SR NPS K TSKLVS       S
Subjt:  VLIRGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAIRPTKNNNVNNTSS-NNPSRTNPSTKPTSKLVS-------S

Query:  NPSGHKKLDNNSTTKI--HPSK---------QTRSTP-SKNSVKAGIASRSGSRSDLSSTAK----------PTAIAKDKYYFDSAGHSATLHDLHVLEK
        NP+G KKLD NSTTKI   PS          QTR TP SK +VK  IAS SGSRS+LSS  K          P  +  +  Y  SAGH ATLHDLHV ++
Subjt:  NPSGHKKLDNNSTTKI--HPSK---------QTRSTP-SKNSVKAGIASRSGSRSDLSSTAK----------PTAIAKDKYYFDSAGHSATLHDLHVLEK

Query:  LQRFSIDGKDLASIVLH-----ESMGSDTKEESSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKLSEYMEREK
        LQR SID  DLA +VLH     ESMGSDTKE SSS SNDSRMFQIYKEIA HRQENSSI SYFTKLEALWDELAT  TDL QCSCGGATEKLSEYMEREK
Subjt:  LQRFSIDGKDLASIVLH-----ESMGSDTKEESSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKLSEYMEREK

Query:  VMQFLVGLNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAH-SNNRDNNDGVQGLVDSNNLDQEKQFDQ
        VMQFLVGLNDSYS ICNQILL+TPFPT+EKAY A+IREEK REL+V LE+VA KVIQNNWLDLQNQNAH SNN DNNDGVQ LVD +N   E+QFDQ
Subjt:  VMQFLVGLNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAH-SNNRDNNDGVQGLVDSNNLDQEKQFDQ

TrEMBL top hitse value%identityAlignment
A0A0A0LRE6 Uncharacterized protein4.6e-3338.68Show/hide
Query:  RGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAIRPTKNNNVNNTSSNNPSRT-----NPSTKPTSKLVSSNPSG--
        RGI+ P RS+ SP   KP N  PI+P +K ++KK  N  K+PN     + +    A  P  N N  N +S  PS        P + P +K     PS   
Subjt:  RGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAIRPTKNNNVNNTSSNNPSRT-----NPSTKPTSKLVSSNPSG--

Query:  HKKLDNNSTTKIHPSKQTRSTPSK-------------NSVKAGIASRSGSRSD-----LSSTAKPTAIAKDKYYFDSAGHSATLHDLHVLEKLQRFSIDG
        H  L +N +     SK   +TPS              NS KA   +   S SD     + +TA P           S G+S + HD+     LQR S +G
Subjt:  HKKLDNNSTTKIHPSKQTRSTPSK-------------NSVKAGIASRSGSRSD-----LSSTAKPTAIAKDKYYFDSAGHSATLHDLHVLEKLQRFSIDG

Query:  KDLASIV----LHESMGSDTKEESSSPSNDSRM--FQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKLSEYMEREKVMQFLVG
        KDL  I+    + + MGS+ ++E SS  N S +   QIY++IASHRQ N S+  YF KL+ LW+++   +++  +          SE  ER+KV+QF +G
Subjt:  KDLASIV----LHESMGSDTKEESSSPSNDSRM--FQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKLSEYMEREKVMQFLVG

Query:  LNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAHSNNRDN-NDGVQGLVDSN
        LND YS IC+QIL+  PFPTVE+AY  IIREEKRREL VAL TVA +VIQ+++     QN  SNN DN N G+   +D++
Subjt:  LNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAHSNNRDN-NDGVQGLVDSN

A0A0A0LU31 Uncharacterized protein3.1e-2938.61Show/hide
Query:  RGIISPPRSRSSPREGKPHNNV---PINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSSNPSGHKKL
        R I S P     P + +  N+    P   P+ P+S KP   +   N +    +   + A  PT       T S  P+  +P+  PT    S  PS  +K 
Subjt:  RGIISPPRSRSSPREGKPHNNV---PINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSSNPSGHKKL

Query:  DNNSTTKIHPSKQ--TRSTPSKNSVKAGIASRSGSRSDLSSTAKPTAIAKDKYYFDSAGHSATLHDL-HVLEKLQRFSIDGKDLASIV----LHESMGSD
            T     SK    R   + NS KA       S SD    A      K   Y +S   S   +D+ H L  LQ  S +GKDL  I+    + + MGS+
Subjt:  DNNSTTKIHPSKQ--TRSTPSKNSVKAGIASRSGSRSDLSSTAKPTAIAKDKYYFDSAGHSATLHDL-HVLEKLQRFSIDGKDLASIV----LHESMGSD

Query:  TKEESSSPSNDSRM--FQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQ-CSCGGATEKLSEYMEREKVMQFLVGLNDSYSNICNQILLTTPF
         K+E SSP N S +   QIY++IASHRQ N S+  YF KL+ LW+++ T ++D  Q  S  G     SE  ER+KVMQF +GLND YS IC+QIL+  PF
Subjt:  TKEESSSPSNDSRM--FQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQ-CSCGGATEKLSEYMEREKVMQFLVGLNDSYSNICNQILLTTPF

Query:  PTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAHSNNRDN-NDGVQGLVD
        PTVE+AY  IIREEKRREL VAL  +A +VIQ+++     Q   SNN DN N G+   +D
Subjt:  PTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAHSNNRDN-NDGVQGLVD

A0A6J1C5Z8 uncharacterized protein LOC1110085882.1e-7048.24Show/hide
Query:  IRGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPT-TAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSS---NPS---
        +RG+ISPPRSRSSPR+ +PHNN   NPPS+P    P        + H +  ++P+ TA R TK          +P R  PS KPT+ +V S   NP+   
Subjt:  IRGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPT-TAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSS---NPS---

Query:  GHKKLDNNSTTKIHPSKQT--RSTP----------------SKNSV---KAGIASRSGSRSD-----LSSTAKPTAIAKDKYYFDSAGHS-------ATL
          KKLD  +T KI  +K +  R+ P                SKN+    K  IA  S SRSD      S ++K         + D   HS         L
Subjt:  GHKKLDNNSTTKIHPSKQT--RSTP----------------SKNSV---KAGIASRSGSRSD-----LSSTAKPTAIAKDKYYFDSAGHS-------ATL

Query:  HDLHVLEKLQRFSIDGKDLASIVLH-----ESMGSDTKEESSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKL
         D  +   LQR SIDGKDLASI+LH     ES+GSDT EES   SN  R+FQIYK+IASHRQENSS+ SYFTKL+ LWDEL T + D+PQC   GA EKL
Subjt:  HDLHVLEKLQRFSIDGKDLASIVLH-----ESMGSDTKEESSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKL

Query:  SEYMEREKVMQFLVGLNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAHSNNRDNNDGVQGLVDSNNLDQEK
        S ++EREKVMQFL+GLN+SYS IC QILL  PFPT+EKAY  IIREEKR EL+ +LE VA KV++N WL LQN  + SN  D  DG+   V+ N  D   
Subjt:  SEYMEREKVMQFLVGLNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAHSNNRDNNDGVQGLVDSNNLDQEK

Query:  QFDQNQVTRFPIEPLLIDLGSPVRC
             ++  FP E LLIDLGSPVRC
Subjt:  QFDQNQVTRFPIEPLLIDLGSPVRC

A0A6J1C7L7 uncharacterized protein LOC1110089866.0e-4143.29Show/hide
Query:  RGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAIRPTKNNNVNNTSSNN--------PSRTNPSTKPTSKLVSSNPS
        RG+ISPP+SR S  E    NN   NPPS P        S      + K  QQ TT  +PT  +N    + N+        PSR  P+  P      +NP+
Subjt:  RGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAIRPTKNNNVNNTSSNN--------PSRTNPSTKPTSKLVSSNPS

Query:  GHKKLDNNSTTKIHPSKQTRST-------------PSKNSVKAGIASRSGSRSDLSSTAKPTAIAKDKYYFDSAGHSATLHDLHVLEKLQRFSIDGKDLA
        GH   ++NSTTK+  +K T S              P+  SV +G +  SG   D ++         +    +    +  +   HV+ +LQ+ SIDGK  A
Subjt:  GHKKLDNNSTTKIHPSKQTRST-------------PSKNSVKAGIASRSGSRSDLSSTAKPTAIAKDKYYFDSAGHSATLHDLHVLEKLQRFSIDGKDLA

Query:  SIV-----LHESMGSDTKEESSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGAT-EKLSEYMEREKVMQFLVGLNDS
         +V     + ES+G  TKEE S  SN  R+ +IYK+IASHRQ NSSI SYFTKLE LW+EL T  +DLPQC    AT +K S+ +EREKVMQFLVGLNDS
Subjt:  SIV-----LHESMGSDTKEESSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGAT-EKLSEYMEREKVMQFLVGLNDS

Query:  YSNICNQILLTTPFPTVEKAYYAIIREE
        YS IC+QILL  PFPTVEKAY  II +E
Subjt:  YSNICNQILLTTPFPTVEKAYYAIIREE

A0A6J1GTG4 serine/arginine repetitive matrix protein 1-like4.4e-7652.48Show/hide
Query:  LIRGIISPPRSRSSPREGKP-HNNVPINPPSKPTSKKPNNNSK---NPN--RSHRKETQQPTTAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSSNPS
        ++RGIISPPRSRSSPRE +P +NN   NPPS+P    P        NPN  R+HRKE  QPT   RPTK  +     S+NP R +PS +P SKL  S P+
Subjt:  LIRGIISPPRSRSSPREGKP-HNNVPINPPSKPTSKKPNNNSK---NPN--RSHRKETQQPTTAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSSNPS

Query:  GHKKLDNNSTTKIHPSKQTR----------STPSKNSVKAGIASRSGSRSDLSSTAKPTAIAKD-------------------KYYFDSAGHSATLHDLH
             +    TK  P   TR          + PSK++ K   AS SGSRSD  S AKP+   K                    + Y D +  + TL D  
Subjt:  GHKKLDNNSTTKIHPSKQTR----------STPSKNSVKAGIASRSGSRSDLSSTAKPTAIAKD-------------------KYYFDSAGHSATLHDLH

Query:  VLEKLQRFSIDGKDLASIVLH-----ESMGSDTKEE--SSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKLSE
        V  KL + S+D KDLA+IVLH     ES+ S+TKEE  SS  +N SRMFQIYKEIASH Q NSSI SY TKL+ALWDEL     D P+CSC G+TEK SE
Subjt:  VLEKLQRFSIDGKDLASIVLH-----ESMGSDTKEE--SSSPSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKLSE

Query:  YMEREKVMQFLVGLNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAHSNNRDNNDGVQGLVDSNNLDQEKQF
         +EREKVMQFL+GLNDSYS IC QIL   PFPTVEKA  AI+REEKRREL+++LE VA KVIQNNWL    QN HS N DN +     VD  NL Q+ + 
Subjt:  YMEREKVMQFLVGLNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQNQNAHSNNRDNNDGVQGLVDSNNLDQEKQF

Query:  DQNQVTRFPIEPLLIDLGSPVRC
        DQN+    PIEPLLIDLGSPVRC
Subjt:  DQNQVTRFPIEPLLIDLGSPVRC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1.6e-0931.07Show/hide
Query:  PSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGG----ATEKLSEYMEREKVMQFLVG--LNDSYSNICNQILLTTPFPTVE
        P  D +++Q+ + +A+ RQ   S+  YF KL  +W EL+     +P+C CGG     T++  E  E+E+  +FL+G  LN  +  +  +I+   P P++ 
Subjt:  PSNDSRMFQIYKEIASHRQENSSIASYFTKLEALWDELATVNTDLPQCSCGG----ATEKLSEYMEREKVMQFLVG--LNDSYSNICNQILLTTPFPTVE

Query:  KAY
        +A+
Subjt:  KAY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTTAATTAGAGGAATTATCAGTCCCCCAAGATCCCGATCTTCTCCAAGAGAAGGCAAACCTCACAATAATGTACCCATCAATCCACCCTCCAAACCCACTTCAAA
GAAACCCAACAACAATAGTAAAAATCCCAACCGAAGCCATCGAAAAGAAACCCAACAACCCACTACTGCTATCCGTCCAACCAAAAACAACAACGTTAATAATACATCTT
CAAACAATCCTTCACGAACTAACCCATCAACAAAACCCACTTCAAAGCTCGTATCCTCAAATCCTAGCGGCCACAAGAAATTAGATAACAATTCCACTACTAAAATCCAC
CCCTCAAAACAGACGCGATCGACGCCTTCAAAGAACAGTGTAAAAGCAGGGATTGCCAGTCGTTCTGGTTCAAGATCTGACCTTTCGTCTACTGCCAAACCAACCGCCAT
TGCTAAGGATAAATATTATTTTGATTCGGCTGGACACTCTGCTACTCTACACGATCTTCATGTTCTTGAAAAGTTGCAACGTTTTTCTATCGACGGTAAAGATCTTGCAA
GCATTGTCCTTCATGAATCAATGGGGTCAGATACAAAGGAAGAAAGTTCTTCTCCAAGCAATGATTCGAGAATGTTTCAAATTTACAAGGAAATTGCATCTCATCGTCAA
GAAAACTCATCCATTGCATCTTACTTCACAAAGCTCGAGGCATTATGGGATGAACTTGCAACAGTCAATACCGATTTGCCTCAATGTTCTTGCGGTGGTGCTACTGAAAA
GCTAAGTGAGTATATGGAGAGAGAAAAAGTTATGCAATTTCTTGTGGGACTAAACGATTCTTATTCAAACATTTGTAACCAAATCCTTCTTACCACGCCATTTCCAACGG
TAGAGAAAGCCTATTATGCAATTATTCGAGAAGAAAAACGTAGGGAATTGCTTGTTGCATTAGAAACTGTTGCGGAAAAAGTAATCCAAAACAATTGGCTTGATCTTCAG
AATCAGAATGCTCATTCCAATAATCGTGATAATAATGATGGTGTTCAAGGATTAGTTGATAGTAATAATCTTGATCAGGAGAAGCAATTTGATCAAAATCAAGTCACAAG
GTTCCCCATTGAGCCATTGCTAATAGATCTTGGATCTCCTGTGCGATGCTGA
mRNA sequenceShow/hide mRNA sequence
ACCCGAAACACCCTCCCATTTCTAATCTGTGAAAGGTCATGAATTGAGATATAGCTCAAAGTCTTTTACTGGGTTGGGTTTTTTCAGAAAGCAAAGCACTGAACAGAGAA
AGTGTCTGTCTCTAATAGCTGTAAGATACAAATGGTGTTAATTAGAGGAATTATCAGTCCCCCAAGATCCCGATCTTCTCCAAGAGAAGGCAAACCTCACAATAATGTAC
CCATCAATCCACCCTCCAAACCCACTTCAAAGAAACCCAACAACAATAGTAAAAATCCCAACCGAAGCCATCGAAAAGAAACCCAACAACCCACTACTGCTATCCGTCCA
ACCAAAAACAACAACGTTAATAATACATCTTCAAACAATCCTTCACGAACTAACCCATCAACAAAACCCACTTCAAAGCTCGTATCCTCAAATCCTAGCGGCCACAAGAA
ATTAGATAACAATTCCACTACTAAAATCCACCCCTCAAAACAGACGCGATCGACGCCTTCAAAGAACAGTGTAAAAGCAGGGATTGCCAGTCGTTCTGGTTCAAGATCTG
ACCTTTCGTCTACTGCCAAACCAACCGCCATTGCTAAGGATAAATATTATTTTGATTCGGCTGGACACTCTGCTACTCTACACGATCTTCATGTTCTTGAAAAGTTGCAA
CGTTTTTCTATCGACGGTAAAGATCTTGCAAGCATTGTCCTTCATGAATCAATGGGGTCAGATACAAAGGAAGAAAGTTCTTCTCCAAGCAATGATTCGAGAATGTTTCA
AATTTACAAGGAAATTGCATCTCATCGTCAAGAAAACTCATCCATTGCATCTTACTTCACAAAGCTCGAGGCATTATGGGATGAACTTGCAACAGTCAATACCGATTTGC
CTCAATGTTCTTGCGGTGGTGCTACTGAAAAGCTAAGTGAGTATATGGAGAGAGAAAAAGTTATGCAATTTCTTGTGGGACTAAACGATTCTTATTCAAACATTTGTAAC
CAAATCCTTCTTACCACGCCATTTCCAACGGTAGAGAAAGCCTATTATGCAATTATTCGAGAAGAAAAACGTAGGGAATTGCTTGTTGCATTAGAAACTGTTGCGGAAAA
AGTAATCCAAAACAATTGGCTTGATCTTCAGAATCAGAATGCTCATTCCAATAATCGTGATAATAATGATGGTGTTCAAGGATTAGTTGATAGTAATAATCTTGATCAGG
AGAAGCAATTTGATCAAAATCAAGTCACAAGGTTCCCCATTGAGCCATTGCTAATAGATCTTGGATCTCCTGTGCGATGCTGACGAATTTCAGGATTAGTTCGAGGACAA
AAATTGAACTTGTCCAAACTATTGAGCATCATGGGTGAGAGTCTTCACATTGAAAACACTTGCCTCCACAGCAAGTGAGTAGGAACTTTTGTATTTACTAGCTTTTTCAT
GTGGTTTATTTTTAGTGGATAAGAATATTAGACGTGGGATTCACTTATTTCTTAAATGCAATATAAATTGTTGAATACAAATAAATAAACTACGCCAAGAATTGAATAGG
AATCTTCTTAGTTTTTAGGGTAGATTCAAGTTTGCTTTTGTCTCACCATTGTGTAATTTTCGTTACTTAATTGTTGTTAAATATTAGATAACATGGACTTCATCTCAAAA
TTAAATGATAATGAGAAGAGTAGTTCATTTATCTTATTAAGATGGTAATTAAAGTTCCTTAATTTTTCAA
Protein sequenceShow/hide protein sequence
MVLIRGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSSNPSGHKKLDNNSTTKIH
PSKQTRSTPSKNSVKAGIASRSGSRSDLSSTAKPTAIAKDKYYFDSAGHSATLHDLHVLEKLQRFSIDGKDLASIVLHESMGSDTKEESSSPSNDSRMFQIYKEIASHRQ
ENSSIASYFTKLEALWDELATVNTDLPQCSCGGATEKLSEYMEREKVMQFLVGLNDSYSNICNQILLTTPFPTVEKAYYAIIREEKRRELLVALETVAEKVIQNNWLDLQ
NQNAHSNNRDNNDGVQGLVDSNNLDQEKQFDQNQVTRFPIEPLLIDLGSPVRC