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Lsi02G005770 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G005770
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionp55
Genome locationchr02:5159988..5160452
RNA-Seq ExpressionLsi02G005770
SyntenyLsi02G005770
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056836.1 p55 [Cucumis melo var. makuwa]1.7e-0941.38Show/hide
Query:  GDHYQVISNALNGPPSSPSSLIETSAIVKSFSSNEVKSIQAEPHTPEVVSSRGKRPATDSP----QHEAPP-QRQRTDR-----PGFDPLDGLIVKMEET
        G+   VI +A+  PP SP          +  +    +S   EPHTP+ V  + KRPA+ SP    +H+ PP Q+ +TD          P+  LI K+E+ 
Subjt:  GDHYQVISNALNGPPSSPSSLIETSAIVKSFSSNEVKSIQAEPHTPEVVSSRGKRPATDSP----QHEAPP-QRQRTDR-----PGFDPLDGLIVKMEET

Query:  VTMLKRMSGKKD-LTSDPLLGRFVSAHTELMACTAQLIMAKSTRK
        + MLKR+  K D L SDPLL  FVSA T LMACTA+L ++KST K
Subjt:  VTMLKRMSGKKD-LTSDPLLGRFVSAHTELMACTAQLIMAKSTRK
KGN64496.1 hypothetical protein Csa_013860 [Cucumis sativus]1.1e-0842.86Show/hide
Query:  ISNALNGPPSSPSSLIETSAIVKSFSSNEVKSIQAEPHTPEVVSSRGKRPATDSP----QHEAPP-QRQRTDR-----PGFDPLDGLIVKMEETVTMLKR
        +++ +  PPSSPS         K  +         EP TP+ V  + KRPA  SP    QH+ PP Q+++TD          P+  LI K+E+ V MLKR
Subjt:  ISNALNGPPSSPSSLIETSAIVKSFSSNEVKSIQAEPHTPEVVSSRGKRPATDSP----QHEAPP-QRQRTDR-----PGFDPLDGLIVKMEETVTMLKR

Query:  MSGKKD-LTSDPLLGRFVSAHTELMACTAQLIMAKSTRKA
        +  KKD L SDPLL  FVSA   L ACTA+LI ++STRKA
Subjt:  MSGKKD-LTSDPLLGRFVSAHTELMACTAQLIMAKSTRKA
TrEMBL top hitse value%identityAlignment
A0A0A0LX14 p555.4e-0942.86Show/hide
Query:  ISNALNGPPSSPSSLIETSAIVKSFSSNEVKSIQAEPHTPEVVSSRGKRPATDSP----QHEAPP-QRQRTDR-----PGFDPLDGLIVKMEETVTMLKR
        +++ +  PPSSPS         K  +         EP TP+ V  + KRPA  SP    QH+ PP Q+++TD          P+  LI K+E+ V MLKR
Subjt:  ISNALNGPPSSPSSLIETSAIVKSFSSNEVKSIQAEPHTPEVVSSRGKRPATDSP----QHEAPP-QRQRTDR-----PGFDPLDGLIVKMEETVTMLKR

Query:  MSGKKD-LTSDPLLGRFVSAHTELMACTAQLIMAKSTRKA
        +  KKD L SDPLL  FVSA   L ACTA+LI ++STRKA
Subjt:  MSGKKD-LTSDPLLGRFVSAHTELMACTAQLIMAKSTRKA
A0A5D3BJN2 p558.3e-1041.38Show/hide
Query:  GDHYQVISNALNGPPSSPSSLIETSAIVKSFSSNEVKSIQAEPHTPEVVSSRGKRPATDSP----QHEAPP-QRQRTDR-----PGFDPLDGLIVKMEET
        G+   VI +A+  PP SP          +  +    +S   EPHTP+ V  + KRPA+ SP    +H+ PP Q+ +TD          P+  LI K+E+ 
Subjt:  GDHYQVISNALNGPPSSPSSLIETSAIVKSFSSNEVKSIQAEPHTPEVVSSRGKRPATDSP----QHEAPP-QRQRTDR-----PGFDPLDGLIVKMEET

Query:  VTMLKRMSGKKD-LTSDPLLGRFVSAHTELMACTAQLIMAKSTRK
        + MLKR+  K D L SDPLL  FVSA T LMACTA+L ++KST K
Subjt:  VTMLKRMSGKKD-LTSDPLLGRFVSAHTELMACTAQLIMAKSTRK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGATCACTACCAAGTAATAAGCAATGCACTCAATGGTCCTCCATCATCACCCAGCAGTCTGATCGAAACTTCGGCCATTGTCAAAAGCTTCTCTTCCAATGAAGT
TAAGTCCATTCAAGCAGAGCCACATACTCCAGAAGTAGTCAGTAGCCGTGGTAAAAGGCCTGCCACCGACAGCCCCCAACATGAAGCCCCACCTCAAAGGCAACGAACCG
ACAGGCCAGGGTTCGACCCATTGGATGGTCTGATAGTGAAGATGGAGGAAACGGTTACGATGCTGAAAAGAATGAGCGGGAAAAAGGATTTGACGAGTGATCCTTTGTTG
GGTCGCTTTGTGTCTGCGCACACTGAGCTCATGGCTTGCACTGCCCAGCTTATAATGGCTAAATCAACCAGGAAAGCATCGAAAGTCAAACGCATTAAAGGAATGGCTGG
AGAGAAGAACATGAACGAAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGATCACTACCAAGTAATAAGCAATGCACTCAATGGTCCTCCATCATCACCCAGCAGTCTGATCGAAACTTCGGCCATTGTCAAAAGCTTCTCTTCCAATGAAGT
TAAGTCCATTCAAGCAGAGCCACATACTCCAGAAGTAGTCAGTAGCCGTGGTAAAAGGCCTGCCACCGACAGCCCCCAACATGAAGCCCCACCTCAAAGGCAACGAACCG
ACAGGCCAGGGTTCGACCCATTGGATGGTCTGATAGTGAAGATGGAGGAAACGGTTACGATGCTGAAAAGAATGAGCGGGAAAAAGGATTTGACGAGTGATCCTTTGTTG
GGTCGCTTTGTGTCTGCGCACACTGAGCTCATGGCTTGCACTGCCCAGCTTATAATGGCTAAATCAACCAGGAAAGCATCGAAAGTCAAACGCATTAAAGGAATGGCTGG
AGAGAAGAACATGAACGAAATCTGA
Protein sequenceShow/hide protein sequence
MGDHYQVISNALNGPPSSPSSLIETSAIVKSFSSNEVKSIQAEPHTPEVVSSRGKRPATDSPQHEAPPQRQRTDRPGFDPLDGLIVKMEETVTMLKRMSGKKDLTSDPLL
GRFVSAHTELMACTAQLIMAKSTRKASKVKRIKGMAGEKNMNEI