; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G006030 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G006030
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein of unknown function, DUF584
Genome locationchr02:5353034..5353627
RNA-Seq ExpressionLsi02G006030
SyntenyLsi02G006030
Gene Ontology termsGO:0005829 - cytosol (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR007608 - Senescence regulator S40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN64530.2 hypothetical protein Csa_013580 [Cucumis sativus]7.4e-9091.24Show/hide
Query:  MAKGRKLGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQRN
        MAKGRKLGINRNERFLGSYSNGHAQ SYNGDDSSELREEDVWSIIDNKNSAD EDENYGNIT+RTRRRSTPRDERNVGGVSI FQDSG + TA ATSQ N
Subjt:  MAKGRKLGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQRN

Query:  NPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTG
        NPRGRHVSASAP+NVPDWSKIL AES  SL E+DDGGYYNNDE EMVPPHEYLAREYARSRN AAATSVFEGVGRTLKGRDMRRVRDAVWSQTG
Subjt:  NPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTG

XP_004145178.1 uncharacterized protein LOC101209631 [Cucumis sativus]6.0e-9291.37Show/hide
Query:  MAKGRKLGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQRN
        MAKGRKLGINRNERFLGSYSNGHAQ SYNGDDSSELREEDVWSIIDNKNSAD EDENYGNIT+RTRRRSTPRDERNVGGVSI FQDSG + TA ATSQ N
Subjt:  MAKGRKLGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQRN

Query:  NPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG
        NPRGRHVSASAP+NVPDWSKIL AES  SL E+DDGGYYNNDE EMVPPHEYLAREYARSRN AAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG
Subjt:  NPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG

XP_008441099.1 PREDICTED: uncharacterized protein LOC103485322 [Cucumis melo]4.9e-9492.42Show/hide
Query:  MAKGRKLGINRNERFLGSYS-NGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQR
        MAKGRKLGINRNERFLGSYS NGHAQGSYNGDDSSELREEDVWSIIDN+NSADGEDENYGNITVRTRRRSTPRDER++GGVSI FQDSG + TAVATSQ 
Subjt:  MAKGRKLGINRNERFLGSYS-NGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQR

Query:  NNPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG
        NNPRGRHVSASAP+NVPDWSKIL AESVESL E+DDGGYYNNDE EMVPPHEYLAREYARSRN AAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG
Subjt:  NNPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG

XP_023542780.1 uncharacterized protein LOC111802588 [Cucurbita pepo subsp. pepo]6.5e-7879.7Show/hide
Query:  MAKGRKLGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQRN
        MAKGRKLGINRNERFLGSY NG+ QGS  GD+SSE REEDVW++IDN NS +GEDE   ++TVR RRRSTP DE NVGGVSI FQDS RTA         
Subjt:  MAKGRKLGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQRN

Query:  NPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG
          RGRH++ASAPMNVPDWSKILRAESVESLPE+D GGYYNNDEA+MVPPHEYLAREYARSRN AAATSV EGVGRTLKGRDMRRVRDAVWSQTGFDG
Subjt:  NPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG

XP_038894790.1 uncharacterized protein LOC120083209 [Benincasa hispida]3.3e-9892.89Show/hide
Query:  MAKGRKLGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQRN
        MAKGRKLGINRNERFLGSYSNG+AQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGN+TVRTRRRSTPRDER VGGVSI F+DSGRT  AV  +QRN
Subjt:  MAKGRKLGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQRN

Query:  NPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG
        NPRGRHVSASAP+NVPDWSKILRAE VESLPE+DDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVW+QTGFDG
Subjt:  NPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG

TrEMBL top hitse value%identityAlignment
A0A0A0LU86 Uncharacterized protein2.9e-9291.37Show/hide
Query:  MAKGRKLGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQRN
        MAKGRKLGINRNERFLGSYSNGHAQ SYNGDDSSELREEDVWSIIDNKNSAD EDENYGNIT+RTRRRSTPRDERNVGGVSI FQDSG + TA ATSQ N
Subjt:  MAKGRKLGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQRN

Query:  NPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG
        NPRGRHVSASAP+NVPDWSKIL AES  SL E+DDGGYYNNDE EMVPPHEYLAREYARSRN AAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG
Subjt:  NPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG

A0A1S3B268 uncharacterized protein LOC1034853222.4e-9492.42Show/hide
Query:  MAKGRKLGINRNERFLGSYS-NGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQR
        MAKGRKLGINRNERFLGSYS NGHAQGSYNGDDSSELREEDVWSIIDN+NSADGEDENYGNITVRTRRRSTPRDER++GGVSI FQDSG + TAVATSQ 
Subjt:  MAKGRKLGINRNERFLGSYS-NGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQR

Query:  NNPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG
        NNPRGRHVSASAP+NVPDWSKIL AESVESL E+DDGGYYNNDE EMVPPHEYLAREYARSRN AAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG
Subjt:  NNPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG

A0A5A7UP29 Uncharacterized protein2.4e-9492.42Show/hide
Query:  MAKGRKLGINRNERFLGSYS-NGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQR
        MAKGRKLGINRNERFLGSYS NGHAQGSYNGDDSSELREEDVWSIIDN+NSADGEDENYGNITVRTRRRSTPRDER++GGVSI FQDSG + TAVATSQ 
Subjt:  MAKGRKLGINRNERFLGSYS-NGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQR

Query:  NNPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG
        NNPRGRHVSASAP+NVPDWSKIL AESVESL E+DDGGYYNNDE EMVPPHEYLAREYARSRN AAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG
Subjt:  NNPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG

A0A6J1GR42 uncharacterized protein LOC1114567394.1e-7879.19Show/hide
Query:  MAKGRKLGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQRN
        MAKGRKLGINRNERFLGSY NG+ QGS  GD+SSE REEDVW++IDN NS +GEDE   ++TVR RRRSTP DE+NVGGVSI FQDS RTA         
Subjt:  MAKGRKLGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQRN

Query:  NPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG
          RGRH++ASAPMNVPDWSKILRAESVESLPE+D GGYYNNDE +MVPPHEYLAREYARSRN AAATSV EGVGRTLKGRDMRRVRDAVWSQTGFDG
Subjt:  NPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG

A0A6J1K0K9 uncharacterized protein LOC1114900091.2e-7779.19Show/hide
Query:  MAKGRKLGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQRN
        MAKGRKLGINR+ERFLGSY NG+ QGS  GD+SSE REEDVW++IDN NS +GEDE   ++TVR RRRSTP DE NVGGVSI FQDS RTA         
Subjt:  MAKGRKLGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQRN

Query:  NPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG
          RGRH++ASAPMNVPDWSKILRAESVESLPE D GGYYNNDEA+MVPPHEYLAREYARSRN AAATSV EGVGRTLKGRDMRRVRDAVWSQTGFDG
Subjt:  NPRGRHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G11700.1 Protein of unknown function, DUF5841.6e-3444.5Show/hide
Query:  MAKGRKLGINRNERFLG-SYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQR
        MA+GRKL ++++ER+LG SYS G + G+ +  D SEL EED+WS     ++ D   E   +      R +  R+ R  GG+S+ F+D+  +   V   + 
Subjt:  MAKGRKLGINRNERFLG-SYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQR

Query:  NNPRG----------RHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAR-EYARSRNAAAATSVFEGVGRTLKGRDMRRVRDA
            G          R +++SAP+NVPDWSKI R  SVES+ E D+      D   M+PPHEYLA+ +  RSR +    SVFEGVGRTLKGR++RRVRDA
Subjt:  NNPRG----------RHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAR-EYARSRNAAAATSVFEGVGRTLKGRDMRRVRDA

Query:  VWSQTGFDG
        +WSQTGF G
Subjt:  VWSQTGFDG

AT1G61930.1 Protein of unknown function, DUF5841.0e-3344.02Show/hide
Query:  MAKGRK-LGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDS--GRTATAVATS
        MAKGRK   +NR++R+LGSY+ G + G+ +  D  EL EED+WS     +     +E+YG   +    R+T      VGG+S+ F+ S     +++    
Subjt:  MAKGRK-LGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDS--GRTATAVATS

Query:  QRNNPRG-------RHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYAR--SRNAAAATSVFEGVGRTLKGRDMRRVRDA
        Q+ +  G       R +++SAP+NVPDWSKI R +SVES+ E+DD     ++E+ M+PPHEYLA+  AR   +      SVF+GVGRTLKGR++RRVRDA
Subjt:  QRNNPRG-------RHVSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYAR--SRNAAAATSVFEGVGRTLKGRDMRRVRDA

Query:  VWSQTGFDG
        +WSQTGF G
Subjt:  VWSQTGFDG

AT3G45210.1 Protein of unknown function, DUF5841.3e-1550.56Show/hide
Query:  VSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGF
        V++S PMNV +WSKIL  E+ +S+   DDGG         +PPHEYLA      +   A+ SV EG+GRTLKGRDM RVR+A+  +TGF
Subjt:  VSASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGF

AT4G21930.1 Protein of unknown function, DUF5849.8e-3246.34Show/hide
Query:  MAKGRKLGINRNERFLGSYSNG---HAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATS
        M KGR L I+R+ERFLGS+      H  G    +   EL EEDVWS+++       E +  G    R+   S     R  G VS              T 
Subjt:  MAKGRKLGINRNERFLGSYSNG---HAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATS

Query:  QRNNPRGRHVSASAPMNVPDWSKILRAESVESL----PEIDDGGYYNND-EAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQ
          +  R RHV+ SAP+ VPDWSKIL+ ESV+S+     + D+    + D E+ MVPPHEY+A   ARSRN    +SVF GVGRTLKGRDMRRVRDAVWSQ
Subjt:  QRNNPRGRHVSASAPMNVPDWSKILRAESVESL----PEIDDGGYYNND-EAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQ

Query:  TGFDG
        TGF G
Subjt:  TGFDG

AT4G21970.1 Protein of unknown function, DUF5844.4e-1641.51Show/hide
Query:  ATSQRNNPRGRHVS-----ASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAV
        ++S R  P+G  VS     +SAPMN+PDWSK+       +   +      ++DE  MVPPHE +A+  AR++   ++ S+ EG+GRTLKGRD+ + R+AV
Subjt:  ATSQRNNPRGRHVS-----ASAPMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAV

Query:  WSQTGF
         ++TGF
Subjt:  WSQTGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAAGGACGAAAGTTGGGAATTAACAGGAACGAGCGGTTCCTTGGGAGCTATAGCAATGGACACGCTCAAGGCTCCTATAATGGAGATGACTCATCGGAGCTCCG
TGAAGAAGATGTATGGTCAATAATTGACAACAAAAACTCGGCCGACGGAGAAGATGAAAATTACGGGAACATTACAGTCAGAACTCGCCGGAGATCGACGCCGCGAGATG
AACGAAACGTCGGTGGAGTGTCAATTGATTTTCAAGATTCTGGAAGGACGGCAACGGCAGTGGCAACATCGCAGAGGAATAATCCACGTGGACGCCACGTGTCGGCATCG
GCTCCGATGAACGTGCCGGATTGGAGCAAGATTCTAAGGGCGGAATCAGTGGAATCGCTGCCGGAGATCGACGACGGAGGGTATTACAACAACGATGAGGCGGAGATGGT
ACCGCCGCATGAGTATTTAGCAAGGGAATACGCGAGGAGCCGGAACGCAGCGGCGGCGACGTCGGTTTTCGAGGGCGTCGGCCGGACTCTAAAAGGGCGAGATATGAGGA
GGGTTCGTGACGCGGTTTGGAGTCAGACCGGGTTCGATGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAAGGACGAAAGTTGGGAATTAACAGGAACGAGCGGTTCCTTGGGAGCTATAGCAATGGACACGCTCAAGGCTCCTATAATGGAGATGACTCATCGGAGCTCCG
TGAAGAAGATGTATGGTCAATAATTGACAACAAAAACTCGGCCGACGGAGAAGATGAAAATTACGGGAACATTACAGTCAGAACTCGCCGGAGATCGACGCCGCGAGATG
AACGAAACGTCGGTGGAGTGTCAATTGATTTTCAAGATTCTGGAAGGACGGCAACGGCAGTGGCAACATCGCAGAGGAATAATCCACGTGGACGCCACGTGTCGGCATCG
GCTCCGATGAACGTGCCGGATTGGAGCAAGATTCTAAGGGCGGAATCAGTGGAATCGCTGCCGGAGATCGACGACGGAGGGTATTACAACAACGATGAGGCGGAGATGGT
ACCGCCGCATGAGTATTTAGCAAGGGAATACGCGAGGAGCCGGAACGCAGCGGCGGCGACGTCGGTTTTCGAGGGCGTCGGCCGGACTCTAAAAGGGCGAGATATGAGGA
GGGTTCGTGACGCGGTTTGGAGTCAGACCGGGTTCGATGGTTAA
Protein sequenceShow/hide protein sequence
MAKGRKLGINRNERFLGSYSNGHAQGSYNGDDSSELREEDVWSIIDNKNSADGEDENYGNITVRTRRRSTPRDERNVGGVSIDFQDSGRTATAVATSQRNNPRGRHVSAS
APMNVPDWSKILRAESVESLPEIDDGGYYNNDEAEMVPPHEYLAREYARSRNAAAATSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG