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Lsi02G006130 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G006130
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPatatin
Genome locationchr02:5437398..5437739
RNA-Seq ExpressionLsi02G006130
SyntenyLsi02G006130
Gene Ontology termsGO:0000162 - tryptophan biosynthetic process (biological process)
GO:0005737 - cytoplasm (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584077.1 hypothetical protein SDJN03_20009, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3574.34Show/hide
Query:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCS--SSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCST-FDVARSKRLNKISGLS
        AATA VAIGTRGT+GSL+KKEIDYFAKIELE CS  SSQR Q P+MA+SGCSSS  TFW SVMSWRRKKK++ + FVPK+CS+ FDV+ S ++NKISG +
Subjt:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCS--SSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCST-FDVARSKRLNKISGLS

Query:  YTILQNDFHSLHM
        YTILQN+FHSLHM
Subjt:  YTILQNDFHSLHM

KAG7019678.1 hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyrosperma]6.6e-3573.45Show/hide
Query:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCS--SSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCST-FDVARSKRLNKISGLS
        AATA VAIGTRGT+GSL+KKEIDYFAKIELE CS  SSQR Q P+MA+SGCSS   TFW SVMSWRRKKK++ + FVPK+CS+ FDV+ S ++NKISG +
Subjt:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCS--SSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCST-FDVARSKRLNKISGLS

Query:  YTILQNDFHSLHM
        YTILQN+FHSLHM
Subjt:  YTILQNDFHSLHM

KGN64543.2 hypothetical protein Csa_013063 [Cucumis sativus]6.2e-4183.64Show/hide
Query:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTI
        AA APVAIGTRGT+GSLVKKEIDYFAKIELE+  SSQRSQGP MASSGC SS  TFWQS+MSWRRK K TSN FV KMCSTFD +RS R+NKISGLSYTI
Subjt:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTI

Query:  LQNDFHSLHM
        LQNDFHSLHM
Subjt:  LQNDFHSLHM

XP_011648422.1 uncharacterized protein LOC105434455 [Cucumis sativus]6.2e-4183.64Show/hide
Query:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTI
        AA APVAIGTRGT+GSLVKKEIDYFAKIELE+  SSQRSQGP MASSGC SS  TFWQS+MSWRRK K TSN FV KMCSTFD +RS R+NKISGLSYTI
Subjt:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTI

Query:  LQNDFHSLHM
        LQNDFHSLHM
Subjt:  LQNDFHSLHM

XP_016898893.1 PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo]7.3e-4282.73Show/hide
Query:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTI
        AATAPVAIGTRGT+GSL+KKEIDYFAKIELE+  SSQRSQGP MASSGC SS  TFWQS+MSWRRKKK TSN F+ KMCSTFD +RS R+NKISGLSYTI
Subjt:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTI

Query:  LQNDFHSLHM
        LQNDFHSLH+
Subjt:  LQNDFHSLHM

TrEMBL top hitse value%identityAlignment
A0A0A0LX43 Uncharacterized protein3.0e-4183.64Show/hide
Query:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTI
        AA APVAIGTRGT+GSLVKKEIDYFAKIELE+  SSQRSQGP MASSGC SS  TFWQS+MSWRRK K TSN FV KMCSTFD +RS R+NKISGLSYTI
Subjt:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTI

Query:  LQNDFHSLHM
        LQNDFHSLHM
Subjt:  LQNDFHSLHM

A0A1S4DSE9 uncharacterized protein LOC1034854093.6e-4282.73Show/hide
Query:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTI
        AATAPVAIGTRGT+GSL+KKEIDYFAKIELE+  SSQRSQGP MASSGC SS  TFWQS+MSWRRKKK TSN F+ KMCSTFD +RS R+NKISGLSYTI
Subjt:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTI

Query:  LQNDFHSLHM
        LQNDFHSLH+
Subjt:  LQNDFHSLHM

A0A5A7UTL1 Uncharacterized protein1.0e-3380.21Show/hide
Query:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGL
        AATAPVAIGTRGT+GSL+KKEIDYFAKIELE+  SSQRSQGP MASSGC SS  TFWQS+MSWRRKKK TSN F+ KMCSTFD +RS R+NKISG+
Subjt:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGL

A0A5N6QB68 Uncharacterized protein1.6e-2153.7Show/hide
Query:  ATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNM---ASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSY
        A APVAIGTRGTVGSLV+KEI+YF KIE++ C SS++ QG  +   ++SG S+S  +FW  +M+W+RKK+++S+  +P +CS  +VA S RLN+I G +Y
Subjt:  ATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNM---ASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSY

Query:  TILQNDFH
         IL+ND H
Subjt:  TILQNDFH

A0A6J1CHB1 uncharacterized protein LOC1110108623.7e-3172.07Show/hide
Query:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSG-CSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYT
        AATAPVAIGTRGTVGSLVKKEIDYFAKIE E CS      G +MASS   SSS  TFW +VMSWRRKKK+  N F+ K+CS FDV+ S RLNKISG +YT
Subjt:  AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSG-CSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYT

Query:  ILQNDFHSLHM
        ILQNDF+SLHM
Subjt:  ILQNDFHSLHM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G21780.1 unknown protein4.2e-1138.53Show/hide
Query:  APVAIGTRGTVGSLVKKEIDYFAKI-----ELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQT---SNCFVPKMCSTFDVARSKRLNKISG
        AP+AIGTRGT+GSLV+KEIDYF        + +    +             SSS    W S   WR+KK+QT      F P MCS  +V+     N++ G
Subjt:  APVAIGTRGTVGSLVKKEIDYFAKI-----ELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQT---SNCFVPKMCSTFDVARSKRLNKISG

Query:  LSYTILQND
         +Y IL++D
Subjt:  LSYTILQND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCAGCTGCAACTGCTCCTGTTGCCATTGGAACTCGAGGAACCGTTGGTTCACTCGTCAAGAAGGAAATTGATTATTTTGCCAAGATTGAGCTTGAAAGCTGCAG
CAGCTCACAGAGGTCTCAAGGGCCTAACATGGCTTCTTCTGGCTGCAGCAGTTCATCATCCACCTTCTGGCAGTCTGTAATGTCGTGGCGAAGGAAGAAGAAGCAAACCA
GCAATTGCTTTGTCCCAAAAATGTGCTCGACTTTCGATGTTGCGAGAAGCAAGCGCTTGAATAAGATTTCTGGGTTAAGTTATACGATCCTTCAGAATGATTTCCACAGC
TTGCACATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCAGCTGCAACTGCTCCTGTTGCCATTGGAACTCGAGGAACCGTTGGTTCACTCGTCAAGAAGGAAATTGATTATTTTGCCAAGATTGAGCTTGAAAGCTGCAG
CAGCTCACAGAGGTCTCAAGGGCCTAACATGGCTTCTTCTGGCTGCAGCAGTTCATCATCCACCTTCTGGCAGTCTGTAATGTCGTGGCGAAGGAAGAAGAAGCAAACCA
GCAATTGCTTTGTCCCAAAAATGTGCTCGACTTTCGATGTTGCGAGAAGCAAGCGCTTGAATAAGATTTCTGGGTTAAGTTATACGATCCTTCAGAATGATTTCCACAGC
TTGCACATGTAG
Protein sequenceShow/hide protein sequence
MAAAATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTILQNDFHS
LHM