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Lsi02G006220 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G006220
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTryptophan synthase
Genome locationchr02:5514687..5515092
RNA-Seq ExpressionLsi02G006220
SyntenyLsi02G006220
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573203.1 Tryptophan synthase beta chain 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.1e-0743.08Show/hide
Query:  MACNLVKNV-GITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQ-----LHNNEKP----------NGEFDTNSLFPVRT---PDLEFVLN
        MA N+V N+  +T QL AT  IAR H VK G GIG S +F  TKK   A+KMQ      H N K            G+F   SL         +   VLN
Subjt:  MACNLVKNV-GITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQ-----LHNNEKP----------NGEFDTNSLFPVRT---PDLEFVLN

Query:  DPKFQEELHVAMREF-----SLYYVEKLTK
        D KFQEEL VA+R+F      LY+ E+LTK
Subjt:  DPKFQEELHVAMREF-----SLYYVEKLTK

XP_022954968.1 tryptophan synthase beta chain 1-like [Cucurbita moschata]1.1e-0742.75Show/hide
Query:  MACNLVKNV--GITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQ-----LHNNEKP----------NGEFDTNSLFPVRT---PDLEFVL
        MA N+V N+   +T QL AT  IAR H VK G GIG S +F  TKK   A+KMQ      H N K            G+F   SL         +   VL
Subjt:  MACNLVKNV--GITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQ-----LHNNEKP----------NGEFDTNSLFPVRT---PDLEFVL

Query:  NDPKFQEELHVAMREF-----SLYYVEKLTK
        ND KFQEEL VA+R+F      LYY E+LT+
Subjt:  NDPKFQEELHVAMREF-----SLYYVEKLTK

XP_022954970.1 tryptophan synthase beta chain 1-like [Cucurbita moschata]1.1e-0743.08Show/hide
Query:  MACNLVKNV-GITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQ-----LHNNEKP----------NGEFDTNSLFPVRT---PDLEFVLN
        MA N+V N+  +T QL AT  IAR H VK G GIG S +F  TKK   A+KMQ      H N K            G+F   SL         +   VLN
Subjt:  MACNLVKNV-GITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQ-----LHNNEKP----------NGEFDTNSLFPVRT---PDLEFVLN

Query:  DPKFQEELHVAMREF-----SLYYVEKLTK
        D KFQEEL VA+R+F      LY+ E+LTK
Subjt:  DPKFQEELHVAMREF-----SLYYVEKLTK

XP_038893791.1 tryptophan synthase beta chain 1-like [Benincasa hispida]6.9e-1044.7Show/hide
Query:  MACNLVKNVGITMQLVATTAIARPHDVKHGK-GIGSSASFWRTKKKMGAIKMQLHNNEKPN-----------------GEFDTNSLFPV---RTPDLEFV
        MACNLVKN  +T Q+ A   IAR H VK GK GIG SA    TKK M  IKMQL  ++  N                 G+F   SL         +   V
Subjt:  MACNLVKNVGITMQLVATTAIARPHDVKHGK-GIGSSASFWRTKKKMGAIKMQLHNNEKPN-----------------GEFDTNSLFPV---RTPDLEFV

Query:  LNDPKFQEELHVAMREF-----SLYYVEKLTK
        LND KFQEEL VA+R+F      LYY E+LTK
Subjt:  LNDPKFQEELHVAMREF-----SLYYVEKLTK

XP_038895944.1 LOW QUALITY PROTEIN: tryptophan synthase beta chain 1-like [Benincasa hispida]1.1e-2364.55Show/hide
Query:  MAC--NLVKNVGITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKK-MGAIKMQLH-NNEKPNGEFDTNSLFPVRTPDLEFVLNDPKFQEELHVAMREF
        MAC   +V N  +T QLVA TAIAR  +VK GK I  SA+FW TKK  M AIKMQLH NNEKPNGEFD  SLF  +  +L+ VLNDPKFQEEL VA+R+F
Subjt:  MAC--NLVKNVGITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKK-MGAIKMQLH-NNEKPNGEFDTNSLFPVRTPDLEFVLNDPKFQEELHVAMREF

Query:  SLYYVEKLTK
        SLYYV++LT+
Subjt:  SLYYVEKLTK

TrEMBL top hitse value%identityAlignment
A0A1S3B3A1 Tryptophan synthase2.7e-0741.67Show/hide
Query:  MACNLVKNVGITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKK--MGAIKMQLHNNE----------------KPNGEFDTNSLFPV---RTPDLEFV
        MACN+VKN  IT QLV     A+PH V  GK +G  A+   T K+  MG IKMQL  +                 K  G+F   SL         +   V
Subjt:  MACNLVKNVGITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKK--MGAIKMQLHNNE----------------KPNGEFDTNSLFPV---RTPDLEFV

Query:  LNDPKFQEELHVAMREF-----SLYYVEKLTK
        LND KFQEEL VA+R+F      LYY E+LTK
Subjt:  LNDPKFQEELHVAMREF-----SLYYVEKLTK

A0A5D3BJR8 Tryptophan synthase beta chain 15.0e-0639.5Show/hide
Query:  MAC---NLVKNVGITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQ-LHNNEKPNGEFDTNS-----LFPVRTPDLEFVLNDPKFQEELHV
        MAC    +V N  +T  +VA T I R + V+ GKGIG   +FWRTK+ M  IKMQ L N+   +G+   +S     L  V   + +F+  D KFQEE+  
Subjt:  MAC---NLVKNVGITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQ-LHNNEKPNGEFDTNS-----LFPVRTPDLEFVLNDPKFQEELHV

Query:  AM-----REFSLYYVEKLT
         M     RE  + Y E+LT
Subjt:  AM-----REFSLYYVEKLT

A0A6J1GSL9 Tryptophan synthase5.4e-0842.75Show/hide
Query:  MACNLVKNV--GITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQ-----LHNNEKP----------NGEFDTNSLFPVRT---PDLEFVL
        MA N+V N+   +T QL AT  IAR H VK G GIG S +F  TKK   A+KMQ      H N K            G+F   SL         +   VL
Subjt:  MACNLVKNV--GITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQ-----LHNNEKP----------NGEFDTNSLFPVRT---PDLEFVL

Query:  NDPKFQEELHVAMREF-----SLYYVEKLTK
        ND KFQEEL VA+R+F      LYY E+LT+
Subjt:  NDPKFQEELHVAMREF-----SLYYVEKLTK

A0A6J1GTV6 Tryptophan synthase5.4e-0843.08Show/hide
Query:  MACNLVKNV-GITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQ-----LHNNEKP----------NGEFDTNSLFPVRT---PDLEFVLN
        MA N+V N+  +T QL AT  IAR H VK G GIG S +F  TKK   A+KMQ      H N K            G+F   SL         +   VLN
Subjt:  MACNLVKNV-GITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQ-----LHNNEKP----------NGEFDTNSLFPVRT---PDLEFVLN

Query:  DPKFQEELHVAMREF-----SLYYVEKLTK
        D KFQEEL VA+R+F      LY+ E+LTK
Subjt:  DPKFQEELHVAMREF-----SLYYVEKLTK

A0A6J1K0T4 Tryptophan synthase5.9e-0741.54Show/hide
Query:  MACNLVKNV-GITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQ-----LHNNEKP----------NGEFDTNSLFPVRT---PDLEFVLN
        MA N+V N+  +T QL AT  IAR H VK G GIG S +F   KK   A+KMQ      H N K            G+F   SL         +   VLN
Subjt:  MACNLVKNV-GITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQ-----LHNNEKP----------NGEFDTNSLFPVRT---PDLEFVLN

Query:  DPKFQEELHVAMREF-----SLYYVEKLTK
        D KFQEEL VA+R+F      LY+ E+LT+
Subjt:  DPKFQEELHVAMREF-----SLYYVEKLTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATGCAATTTGGTGAAAAATGTTGGAATCACCATGCAATTAGTTGCAACCACAGCCATAGCGAGACCACATGATGTAAAGCATGGGAAAGGAATTGGATCATCAGC
CAGTTTTTGGAGAACAAAGAAGAAAATGGGAGCAATAAAGATGCAGCTTCATAATAATGAGAAACCAAATGGCGAATTTGATACCAACTCTCTATTCCCCGTTCGAACTC
CCGACTTGGAATTCGTTTTAAACGATCCCAAATTCCAGGAGGAGCTGCATGTGGCGATGAGGGAGTTTTCGCTGTATTACGTGGAGAAGCTGACAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATGCAATTTGGTGAAAAATGTTGGAATCACCATGCAATTAGTTGCAACCACAGCCATAGCGAGACCACATGATGTAAAGCATGGGAAAGGAATTGGATCATCAGC
CAGTTTTTGGAGAACAAAGAAGAAAATGGGAGCAATAAAGATGCAGCTTCATAATAATGAGAAACCAAATGGCGAATTTGATACCAACTCTCTATTCCCCGTTCGAACTC
CCGACTTGGAATTCGTTTTAAACGATCCCAAATTCCAGGAGGAGCTGCATGTGGCGATGAGGGAGTTTTCGCTGTATTACGTGGAGAAGCTGACAAAGTAA
Protein sequenceShow/hide protein sequence
MACNLVKNVGITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQLHNNEKPNGEFDTNSLFPVRTPDLEFVLNDPKFQEELHVAMREFSLYYVEKLTK