; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G006270 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G006270
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionnuclear transport factor 2
Genome locationchr02:5581012..5582805
RNA-Seq ExpressionLsi02G006270
SyntenyLsi02G006270
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0044613 - nuclear pore central transport channel (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR002075 - Nuclear transport factor 2
IPR018222 - Nuclear transport factor 2, eukaryote
IPR032710 - NTF2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004153658.1 nuclear transport factor 2B [Cucumis sativus]1.8e-5790.4Show/hide
Query:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS
        MEEE +IIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGV DISSKLQQLPFERCRH+VST+DTQPSS  GSILIFVSGS+E+PEEEH LR+S
Subjt:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS

Query:  QMFHLVPSPLGNLFVQNDIFRLNYG
        QMFHLVPSP GNLFVQNDIFRLNYG
Subjt:  QMFHLVPSPLGNLFVQNDIFRLNYG

XP_008441397.1 PREDICTED: nuclear transport factor 2 [Cucumis melo]2.0e-5688.71Show/hide
Query:  EEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQ
        EE+ +IIGKAFVEHYY LFDNERASLSSLYQPDSMLTFEGQQILGV+DIS+KLQQLPFERCRH+VST+DTQPSS  GSILIFVSGS+E+PEEEH LRYSQ
Subjt:  EEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQ

Query:  MFHLVPSPLGNLFVQNDIFRLNYG
        MFHLVPSP GNLFVQNDIFRLNYG
Subjt:  MFHLVPSPLGNLFVQNDIFRLNYG

XP_022933198.1 nuclear transport factor 2B [Cucurbita moschata]2.9e-5587.2Show/hide
Query:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS
        MEEEA+I+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGVDDISS+LQQLPFERCRH+VSTVDTQPS+  GSILIFVSGSLELP+EEH LR+S
Subjt:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS

Query:  QMFHLVPSPLGNLFVQNDIFRLNYG
        QMFHLVP+  GNL VQNDIFRLNYG
Subjt:  QMFHLVPSPLGNLFVQNDIFRLNYG

XP_023519037.1 nuclear transport factor 2B [Cucurbita pepo subsp. pepo]3.8e-5587.2Show/hide
Query:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS
        MEEE +I+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGVDDISS+LQQLPFERCRH+VSTVDTQPS+  GSILIFVSGSLELPEEEH LR+S
Subjt:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS

Query:  QMFHLVPSPLGNLFVQNDIFRLNYG
        QMFHLVP+  GNL VQNDIFRLNYG
Subjt:  QMFHLVPSPLGNLFVQNDIFRLNYG

XP_038895004.1 nuclear transport factor 2B [Benincasa hispida]7.3e-5993.6Show/hide
Query:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS
        MEEEA+IIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFER RHIVST+DTQPSS LGS LIFVSGSLELPEEEHQLR+S
Subjt:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS

Query:  QMFHLVPSPLGNLFVQNDIFRLNYG
        QMFHLVPSP GNLFVQN+IFRLNYG
Subjt:  QMFHLVPSPLGNLFVQNDIFRLNYG

TrEMBL top hitse value%identityAlignment
A0A0A0LUU9 NTF2 domain-containing protein8.7e-5890.4Show/hide
Query:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS
        MEEE +IIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGV DISSKLQQLPFERCRH+VST+DTQPSS  GSILIFVSGS+E+PEEEH LR+S
Subjt:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS

Query:  QMFHLVPSPLGNLFVQNDIFRLNYG
        QMFHLVPSP GNLFVQNDIFRLNYG
Subjt:  QMFHLVPSPLGNLFVQNDIFRLNYG

A0A1S3B3B7 nuclear transport factor 29.6e-5788.71Show/hide
Query:  EEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQ
        EE+ +IIGKAFVEHYY LFDNERASLSSLYQPDSMLTFEGQQILGV+DIS+KLQQLPFERCRH+VST+DTQPSS  GSILIFVSGS+E+PEEEH LRYSQ
Subjt:  EEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQ

Query:  MFHLVPSPLGNLFVQNDIFRLNYG
        MFHLVPSP GNLFVQNDIFRLNYG
Subjt:  MFHLVPSPLGNLFVQNDIFRLNYG

A0A6J1CEC9 nuclear transport factor 24.0e-5584.8Show/hide
Query:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS
        MEEE+E++G+AFVEHYYQLFDNERAS+SSLYQP+SMLTFEGQ+ILGVDDISS+LQQLPFERCRH+VST+DTQPS+A GS+LIFVSGSLELP EEHQLR+S
Subjt:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS

Query:  QMFHLVPSPLGNLFVQNDIFRLNYG
        QMFHLVP+  G+LFVQNDIFRLNYG
Subjt:  QMFHLVPSPLGNLFVQNDIFRLNYG

A0A6J1F427 nuclear transport factor 2B1.4e-5587.2Show/hide
Query:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS
        MEEEA+I+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGVDDISS+LQQLPFERCRH+VSTVDTQPS+  GSILIFVSGSLELP+EEH LR+S
Subjt:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS

Query:  QMFHLVPSPLGNLFVQNDIFRLNYG
        QMFHLVP+  GNL VQNDIFRLNYG
Subjt:  QMFHLVPSPLGNLFVQNDIFRLNYG

A0A6J1KQ62 nuclear transport factor 2B5.3e-5586.4Show/hide
Query:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS
        MEEEA+I+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGV DISS+LQQLPFERCRH+VSTVDTQPS+  GSILIFVSGSLELPEEEH LR+S
Subjt:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS

Query:  QMFHLVPSPLGNLFVQNDIFRLNYG
        QMFHLVP+  GNL +QNDIFRLNYG
Subjt:  QMFHLVPSPLGNLFVQNDIFRLNYG

SwissProt top hitse value%identityAlignment
Q10100 Nuclear transport factor 25.3e-2852.63Show/hide
Query:  FVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLG
        F + YYQ FD++R+ LSSLY+ +SML+FEG Q+ G   I  KL  LPF+R +H +ST+D QP+   GS+++ V+G L L EE+   RYSQ+FHLV +  G
Subjt:  FVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLG

Query:  NLFVQNDIFRLNYG
        N +V ND+FRLNYG
Subjt:  NLFVQNDIFRLNYG

Q9C7F5 Nuclear transport factor 2B2.4e-3657.85Show/hide
Query:  EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMF
        + + + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF++C+H +STVD QPS     +L+FVSG+L+L  EEH L++SQMF
Subjt:  EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMF

Query:  HLVPSPLGNLFVQNDIFRLNY
        HL+P+P G+ +V NDIFRLNY
Subjt:  HLVPSPLGNLFVQNDIFRLNY

Q9FZK4 Nuclear transport factor 2A3.2e-3357.02Show/hide
Query:  EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMF
        + + + KAFVEHYY  FD  R  L SLYQ  SMLTFEGQ+I G  +I +KL  LPF++C+H ++TVD QPS   G +L+FVSG+L+L  E+H L++SQMF
Subjt:  EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMF

Query:  HLVPSPLGNLFVQNDIFRLNY
        HL+ S  GN +V NDIFRLNY
Subjt:  HLVPSPLGNLFVQNDIFRLNY

Q9P926 Nuclear transport factor 21.3e-2647.58Show/hide
Query:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS
        M  +   +   F   YY  FD++R+ L +LY+ +SMLTFE  Q+ G  DI  KL  LPF++  H +ST+D QP+SA G IL+ V+G L + EE++  RYS
Subjt:  MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYS

Query:  QMFHLVPSPLGNLFVQNDIFRLNY
        Q+FHL+P   G+ +V NDIFRLNY
Subjt:  QMFHLVPSPLGNLFVQNDIFRLNY

Q9XJ54 Nuclear transport factor 21.0e-3458.2Show/hide
Query:  EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMF
        +A+ + KAFVEHYY+ FD  R +L SLYQ  SMLTFEGQQ LG   I+ KL  LPF +C H ++TVD QPS   G +L+FVSGSL    +EH L++SQMF
Subjt:  EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMF

Query:  HLVPSPLGNLFVQNDIFRLNYG
         L+P+  GN +VQND+FRLNYG
Subjt:  HLVPSPLGNLFVQNDIFRLNYG

Arabidopsis top hitse value%identityAlignment
AT1G11570.1 NTF2-like8.1e-3262.14Show/hide
Query:  EIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSS---ALGSILIFVSGSLELPEEEHQLRYSQM
        E +  AFV HYY LFDN+R+SLSSLY P S+LTFEGQ I GVD+IS+KL+QLPF++C H++STVD+QPSS     G IL+FVSGS++L  E+H LR+SQ+
Subjt:  EIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSS---ALGSILIFVSGSLELPEEEHQLRYSQM

Query:  FHL
        + L
Subjt:  FHL

AT1G11570.2 NTF2-like1.9e-4163.41Show/hide
Query:  EIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSS---ALGSILIFVSGSLELPEEEHQLRYSQM
        E +  AFV HYY LFDN+R+SLSSLY P S+LTFEGQ I GVD+IS+KL+QLPF++C H++STVD+QPSS     G IL+FVSGS++L  E+H LR+SQ 
Subjt:  EIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSS---ALGSILIFVSGSLELPEEEHQLRYSQM

Query:  FHLVPSPLGNLFVQNDIFRLNYG
        FHL+P   G+ FVQN++FRLNYG
Subjt:  FHLVPSPLGNLFVQNDIFRLNYG

AT1G27310.1 nuclear transport factor 2A2.3e-3457.02Show/hide
Query:  EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMF
        + + + KAFVEHYY  FD  R  L SLYQ  SMLTFEGQ+I G  +I +KL  LPF++C+H ++TVD QPS   G +L+FVSG+L+L  E+H L++SQMF
Subjt:  EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMF

Query:  HLVPSPLGNLFVQNDIFRLNY
        HL+ S  GN +V NDIFRLNY
Subjt:  HLVPSPLGNLFVQNDIFRLNY

AT1G27970.1 nuclear transport factor 2B1.7e-3757.85Show/hide
Query:  EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMF
        + + + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF++C+H +STVD QPS     +L+FVSG+L+L  EEH L++SQMF
Subjt:  EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMF

Query:  HLVPSPLGNLFVQNDIFRLNY
        HL+P+P G+ +V NDIFRLNY
Subjt:  HLVPSPLGNLFVQNDIFRLNY

AT1G27970.2 nuclear transport factor 2B7.8e-3556.41Show/hide
Query:  EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMF
        + + + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF++C+H +STVD QPS     +L+FVSG+L+L  EEH L++SQMF
Subjt:  EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMF

Query:  HLVPSPLGNLFVQNDIF
        HL+P+P G+ +V NDIF
Subjt:  HLVPSPLGNLFVQNDIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGAGGCTGAGATAATTGGGAAGGCTTTTGTGGAACATTATTACCAATTGTTTGATAATGAAAGAGCTTCTCTTTCCTCTTTGTACCAACCCGACTCCATGCT
CACTTTTGAGGGCCAACAAATTTTAGGTGTTGATGATATCTCCTCAAAGCTTCAACAATTGCCATTTGAACGTTGTCGACATATCGTTAGCACCGTCGACACGCAGCCTT
CCTCCGCCCTCGGCTCCATCCTCATCTTCGTCAGCGGTAGCCTTGAGCTGCCCGAAGAAGAACACCAACTCAGATACAGCCAGATGTTTCACTTAGTACCTTCGCCACTG
GGCAACCTTTTCGTTCAGAACGATATTTTTCGCCTCAATTACGGTTAG
mRNA sequenceShow/hide mRNA sequence
ACCATCTCCTTTATTCCTCTCTCTTTGCGTACATATACAGCGATTTCAATTATTCCCTATTTTCAATCACTCCCCCAAATGACTCTTCTACCCATCTTCCCCTTCATTTG
TCAAGCAGATATCTCAAGGGCATGCCAGTAATTTCGTCCCCTCCTACATGCACTTGAAAATAAAAGGGTTTGAAGAAACTTAGTAAGTGTACATTATAGTTTGTTGTTGT
AGAGAAAAAGAAATGGAAGAAGAGGCTGAGATAATTGGGAAGGCTTTTGTGGAACATTATTACCAATTGTTTGATAATGAAAGAGCTTCTCTTTCCTCTTTGTACCAACC
CGACTCCATGCTCACTTTTGAGGGCCAACAAATTTTAGGTGTTGATGATATCTCCTCAAAGCTTCAACAATTGCCATTTGAACGTTGTCGACATATCGTTAGCACCGTCG
ACACGCAGCCTTCCTCCGCCCTCGGCTCCATCCTCATCTTCGTCAGCGGTAGCCTTGAGCTGCCCGAAGAAGAACACCAACTCAGATACAGCCAGATGTTTCACTTAGTA
CCTTCGCCACTGGGCAACCTTTTCGTTCAGAACGATATTTTTCGCCTCAATTACGGTTAGTTCGTTCAGGGCTTCTTCGTGTCTACATTTCAACACACAAACGCTGTCGT
TTCAAGGGATGTGATTTGTATTCTGCTTCTTATCTAAATATACGAAATTTCTGATTTGTTTTTTCTTTATAATCTCTTATGTGCTCTGTTTCGTCTCCCTTTTCATTTTT
GGGCTTGGTATTTCGGCCCAATAATCTAGCTATGACTTGCCCGGCCCAATATCTCGACTTAAACAGGCCCCTGGTCGTAACTGTGCTAGCTTTTTGAGACGTGATGATCA
AAGTTTATTTTCGATCAAATTTAATAATATTTTTGTGACTGCTGAGTGAA
Protein sequenceShow/hide protein sequence
MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPL
GNLFVQNDIFRLNYG