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Lsi02G006360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G006360
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionexopolygalacturonase-like
Genome locationchr02:5689056..5690552
RNA-Seq ExpressionLsi02G006360
SyntenyLsi02G006360
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR011050 - Pectin lyase fold/virulence factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157826.1 exopolygalacturonase-like [Momordica charantia]1.1e-1578.95Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD
        KS PC+ VEVADIDLTYSGSQGPITSQCANV PT+ G QNP+ICAE A P+D PSTD
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD

XP_022933149.1 exopolygalacturonase-like [Cucurbita moschata]6.9e-1571.93Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD
        KS PC+ VE+ADIDLTYSG +GPI S+CANV PTV G QNP ICA+PAPP   PSTD
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD

XP_023547057.1 exopolygalacturonase-like [Cucurbita pepo subsp. pepo]6.9e-1570.18Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD
        KS PC+ VE+AD+DLTYSG +GPI S+CANV PT+ G QNP ICAEPAPP   PSTD
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD

XP_038889526.1 exopolygalacturonase-like [Benincasa hispida]1.4e-1578.95Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD
        KS PC+ VEVADI+LTY+GS+GPITSQCANV PT+   QNPRICAEPA PVDAPSTD
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD

XP_038895545.1 exopolygalacturonase-like [Benincasa hispida]2.5e-1784.21Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD
        KS PC+ VEVADIDL+YSGSQGPITSQCANVNP V G QNPRICAEPA P+DAPSTD
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD

TrEMBL top hitse value%identityAlignment
A0A6J1DCB0 exopolygalacturonase-like3.4e-1578.95Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD
        KS PC+ VEVADIDLTYSGSQGPI SQCANV PT+ G QNP ICAE A P DAPSTD
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD

A0A6J1DZB6 exopolygalacturonase-like5.2e-1678.95Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD
        KS PC+ VEVADIDLTYSGSQGPITSQCANV PT+ G QNP+ICAE A P+D PSTD
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD

A0A6J1EYY1 exopolygalacturonase-like3.4e-1571.93Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD
        KS PC+ VE+ADIDLTYSG +GPI S+CANV PTV G QNP ICA+PAPP   PSTD
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD

A0A6J1G454 exopolygalacturonase-like7.5e-1570.18Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD
        KS PC+ VE+ADIDLTYSG +GPI S+CANV PT+ G QNP ICA+PAPP   PSTD
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD

A0A6J1I9Y3 exopolygalacturonase-like4.4e-1570.18Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD
        KS PC+ VE+ADIDLTYSG +GPI S+CANV PT+ G QNP ICA+PAPP   PSTD
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)1.8e-1062.5Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPA
        KSFPC  VE+ADIDLTYSG  GP TS C N+ PT+ G Q P IC+  A
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPA

P35337 Polygalacturonase3.8e-0843.86Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD
        K  PC++VE+ DI++ Y+G  GP T +C NV P ++G QNP+ C    P V AP  +
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD

Q05967 Polygalacturonase4.5e-0950Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPA
        K  PC+ +EV DID+TYSG +GP  S C N+ P++ G QNP +C   A
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPA

Q39766 Polygalacturonase3.2e-0754.17Show/hide
Query:  SFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAP
        S PCQ+VE+ADID+ ++G++ P TSQC NV P  IG  NP  C+ P P
Subjt:  SFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAP

W8P8Q3 Probable galacturan 1,4-alpha-galacturonidase SALK65.5e-0757.45Show/hide
Query:  PCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPP
        PC  VE+ADIDLT+ G  G   SQC NV P V G QNP  C  PA P
Subjt:  PCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPP

Arabidopsis top hitse value%identityAlignment
AT1G17150.1 Pectin lyase-like superfamily protein6.9e-0540.91Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRIC
        K+FPC+ V++ DI+LT+ G  GP ++ C NV+ +  G   P  C
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRIC

AT3G07820.1 Pectin lyase-like superfamily protein1.0e-1150Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPA
        K +PCQ+VE+ DID+ Y+G+ GP T  C+NV+P ++G+Q+P+ C+ PA
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPA

AT3G07830.1 Pectin lyase-like superfamily protein1.6e-0946.81Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEP
        K +PC++V+V DI++ Y+G+ GP T  C+NV P ++GTQ P+ C  P
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEP

AT3G07840.1 Pectin lyase-like superfamily protein2.7e-0943.86Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD
        K+ PC +VE+ +I+L Y G+ GP T  C+NV+P ++GTQNP+ C+    P  A   D
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD

AT5G48140.1 Pectin lyase-like superfamily protein4.9e-1150Show/hide
Query:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPA--PP
        K +PCQ+VEV D+++ Y+G+ GP T QC+NV+P ++GTQ P+ C+ P   PP
Subjt:  KSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPA--PP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTTAAAAGTTTTCCATGTCAAAGTGTAGAAGTTGCTGATATTGACCTCACTTACAGTGGAAGCCAAGGGCCGATTACGTCTCAGTGTGCAAATGTGAATCCTAC
TGTTATTGGAACACAAAACCCTCGCATATGCGCTGAACCTGCTCCTCCTGTTGATGCTCCATCAACTGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATTTAAAAGTTTTCCATGTCAAAGTGTAGAAGTTGCTGATATTGACCTCACTTACAGTGGAAGCCAAGGGCCGATTACGTCTCAGTGTGCAAATGTGAATCCTAC
TGTTATTGGAACACAAAACCCTCGCATATGCGCTGAACCTGCTCCTCCTGTTGATGCTCCATCAACTGACTGA
Protein sequenceShow/hide protein sequence
MSFKSFPCQSVEVADIDLTYSGSQGPITSQCANVNPTVIGTQNPRICAEPAPPVDAPSTD