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Lsi02G006940 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G006940
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCalcium-binding EF-hand family protein
Genome locationchr02:6200704..6201057
RNA-Seq ExpressionLsi02G006940
SyntenyLsi02G006940
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site
IPR044205 - Calcium-binding protein KIC/PBP1/KRP1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056934.1 calcium-binding protein PBP1 [Cucumis melo var. makuwa]1.7e-4682.46Show/hide
Query:  SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSS
        SGN VV FKDFFP+M+EKLG+KGF+KELR GF LLMDKEKGVIT ESLRK M F GL+LED+E+MWMVREGDLDGDGALSEAEF ILMIKLSPGFMHLSS
Subjt:  SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSS

Query:  TLFHQSHLDKKFRK
        + FHQSHLD+KF K
Subjt:  TLFHQSHLDKKFRK

KAE8652697.1 hypothetical protein Csa_014317 [Cucumis sativus]1.1e-4379.82Show/hide
Query:  SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSS
        SG DVV FKDFFPEM+EKLG KGF+KELR GF LLMDKEKGVIT ESLRK M F GL+LED+E+MWMV+EGDLDGDGALSEAEF ILMIKLSPGFMHLSS
Subjt:  SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSS

Query:  TLFHQSHLDKKFRK
        + FHQSH D+   K
Subjt:  TLFHQSHLDKKFRK

KAG6573227.1 Calcium-binding protein KIC, partial [Cucurbita argyrosperma subsp. sororia]1.6e-3674.14Show/hide
Query:  MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHL
        MGS N VV F+DFFP MVEKLG+KGFM+ELR GF LLMDKEKGVIT ESLR KMGFLG  L+++E M MVREGDLDGDGALSEAEFC+LM KLSPG M L
Subjt:  MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHL

Query:  SSTLFHQSHLDKKFRK
        S+ LF Q     KFRK
Subjt:  SSTLFHQSHLDKKFRK

KAG7012400.1 Calcium-binding protein KIC, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-3573.28Show/hide
Query:  MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHL
        MGS N VV F+DFFP MVEKLG+KGFM+ELR GF LLMDKEKGVIT ESLR KM FLG  L+++E M MVREGDLDGDGALSEAEFC+LM KLSPG M L
Subjt:  MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHL

Query:  SSTLFHQSHLDKKFRK
        S+ LF Q     KFRK
Subjt:  SSTLFHQSHLDKKFRK

XP_038895967.1 calcium-binding protein PBP1-like [Benincasa hispida]8.7e-4682.91Show/hide
Query:  MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHL
        MGSGN VVFFKDFFPEMVEKLGIKGFMKELRSGF L+MDKEKG+ITPESLRK MGFLGLILED+E+M MVREGDLDGDGAL+EAEFCILMI+LSP     
Subjt:  MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHL

Query:  SSTLFHQSHLDKKFRKK
          TLFHQSHLDK F +K
Subjt:  SSTLFHQSHLDKKFRKK

TrEMBL top hitse value%identityAlignment
A0A067GJU9 EF-hand domain-containing protein1.1e-2763.21Show/hide
Query:  MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGL-ILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMH
        M S N  V F+DFFP MVEKLG +GFM+EL +GF LLMD++KG+IT ESL+K    LGL  + D+ELM M+REGDLDGDGAL+E EFC LM +LSPG M 
Subjt:  MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGL-ILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMH

Query:  LSSTLF
         S+ LF
Subjt:  LSSTLF

A0A0A0LV00 EF-hand domain-containing protein1.2e-4581.58Show/hide
Query:  SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSS
        SG DVV FKDFFPEM+EKLG KGF+KELR GF LLMDKEKGVIT ESLRK M F GL+LED+E+MWMV+EGDLDGDGALSEAEF ILMIKLSPGFMHLSS
Subjt:  SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSS

Query:  TLFHQSHLDKKFRK
        + FHQSH D+KF K
Subjt:  TLFHQSHLDKKFRK

A0A5A7UNY8 Calcium-binding protein PBP18.5e-4782.46Show/hide
Query:  SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSS
        SGN VV FKDFFP+M+EKLG+KGF+KELR GF LLMDKEKGVIT ESLRK M F GL+LED+E+MWMVREGDLDGDGALSEAEF ILMIKLSPGFMHLSS
Subjt:  SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSS

Query:  TLFHQSHLDKKFRK
        + FHQSHLD+KF K
Subjt:  TLFHQSHLDKKFRK

A0A6J1JUT4 calcium-binding protein KIC-like8.8e-2878.41Show/hide
Query:  MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCI
        MGS N VV F+DFFP MVEKLG+KGFM+ELR GF LLMDKEKGVIT ESLR KMGFLG  LE++E M MV EGDLDGDGALSEAEF I
Subjt:  MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCI

A0A7N2LV84 EF-hand domain-containing protein5.2e-2864.22Show/hide
Query:  MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI-LEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMH
        MGS N VV F+DFFP MVEKLG +GFMKEL +GF LLMD+EKGVIT +SL++    LGL  + D+ELM M+REGDLDGDGAL+E EFC LM +LSPG M 
Subjt:  MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI-LEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMH

Query:  LSSTLFHQS
         SS L  ++
Subjt:  LSSTLFHQS

SwissProt top hitse value%identityAlignment
O81831 Calcium-binding protein KRP12.1e-1852.58Show/hide
Query:  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKK-MGFLGL-ILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTL
        F DF P M   LG +G + EL +GF LLMD+EKGVIT ESLR+     LGL  L D+++  M++EGD D DGAL++ EFC+LM +LSP  M  S  L
Subjt:  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKK-MGFLGL-ILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTL

P43645 Caltractin (Fragment)1.5e-0835.16Show/hide
Query:  GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLS
        G+  + F++F   M  K+G +   +E+   F L  D + G IT ++L++    LG  L D+E+  M+ E D DGDG ++E EF  +M K S
Subjt:  GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLS

Q12798 Centrin-16.7e-0937.36Show/hide
Query:  GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLS
        G   + F DF   M +K+  K   +E+   F L  D E G I+ ++L++    LG  L D+EL  M+ E D DGDG ++E EF  +M K S
Subjt:  GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLS

Q9LSQ6 Calcium-binding protein PBP12.2e-2055.32Show/hide
Query:  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMG-FLGL-ILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLS
        F+DFFP M  KLG +G ++E+  GF LLMDK+KGVIT ESLR+     LGL  L DD++ +M+ EGD D DGAL++ EFC+LM +LSP  M  S
Subjt:  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMG-FLGL-ILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLS

Q9ZPX9 Calcium-binding protein KIC1.4e-1948.42Show/hide
Query:  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI-LEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSST
        ++D  P M EK+ ++ F+ EL  GF LL D E+ +IT ESLR+  G LG+  +  ++   MVREGDLDGDGAL++ EFC+LM++LSP  M  + T
Subjt:  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI-LEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSST

Arabidopsis top hitse value%identityAlignment
AT1G66410.1 calmodulin 43.4e-0834.09Show/hide
Query:  GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMI
        GN  + F +F   M +K+      +EL+  F +    + G I+   LR  M  LG  L D+E+  M+RE D+DGDG ++  EF  +M+
Subjt:  GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMI

AT1G66410.2 calmodulin 43.4e-0834.09Show/hide
Query:  GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMI
        GN  + F +F   M +K+      +EL+  F +    + G I+   LR  M  LG  L D+E+  M+RE D+DGDG ++  EF  +M+
Subjt:  GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMI

AT2G46600.1 Calcium-binding EF-hand family protein1.0e-2048.42Show/hide
Query:  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI-LEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSST
        ++D  P M EK+ ++ F+ EL  GF LL D E+ +IT ESLR+  G LG+  +  ++   MVREGDLDGDGAL++ EFC+LM++LSP  M  + T
Subjt:  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI-LEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSST

AT4G27280.1 Calcium-binding EF-hand family protein1.5e-1952.58Show/hide
Query:  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKK-MGFLGL-ILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTL
        F DF P M   LG +G + EL +GF LLMD+EKGVIT ESLR+     LGL  L D+++  M++EGD D DGAL++ EFC+LM +LSP  M  S  L
Subjt:  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKK-MGFLGL-ILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTL

AT5G54490.1 pinoid-binding protein 11.6e-2155.32Show/hide
Query:  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMG-FLGL-ILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLS
        F+DFFP M  KLG +G ++E+  GF LLMDK+KGVIT ESLR+     LGL  L DD++ +M+ EGD D DGAL++ EFC+LM +LSP  M  S
Subjt:  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMG-FLGL-ILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCAGGAAACGATGTCGTTTTCTTCAAAGATTTCTTCCCTGAAATGGTGGAGAAACTGGGAATTAAAGGGTTTATGAAGGAATTGAGATCTGGGTTTTGTTTGCT
GATGGATAAAGAAAAAGGTGTCATAACTCCAGAGAGCTTGAGAAAGAAGATGGGATTTTTGGGATTAATATTGGAAGATGATGAATTGATGTGGATGGTGAGAGAAGGAG
ATTTGGATGGAGATGGAGCTTTAAGTGAAGCTGAATTTTGTATTTTAATGATCAAACTTAGCCCTGGATTTATGCATTTATCTTCAACTTTGTTTCACCAATCTCATTTG
GATAAAAAGTTTAGGAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGATCAGGAAACGATGTCGTTTTCTTCAAAGATTTCTTCCCTGAAATGGTGGAGAAACTGGGAATTAAAGGGTTTATGAAGGAATTGAGATCTGGGTTTTGTTTGCT
GATGGATAAAGAAAAAGGTGTCATAACTCCAGAGAGCTTGAGAAAGAAGATGGGATTTTTGGGATTAATATTGGAAGATGATGAATTGATGTGGATGGTGAGAGAAGGAG
ATTTGGATGGAGATGGAGCTTTAAGTGAAGCTGAATTTTGTATTTTAATGATCAAACTTAGCCCTGGATTTATGCATTTATCTTCAACTTTGTTTCACCAATCTCATTTG
GATAAAAAGTTTAGGAAGAAATAG
Protein sequenceShow/hide protein sequence
MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLFHQSHL
DKKFRKK