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Lsi02G006950 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G006950
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionB-box type zinc finger protein
Genome locationchr02:6204465..6204887
RNA-Seq ExpressionLsi02G006950
SyntenyLsi02G006950
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000315 - B-box-type zinc finger


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652697.1 hypothetical protein Csa_014317 [Cucumis sativus]1.6e-5478.72Show/hide
Query:  SQESESNPEDLELKIMKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVASLQI
        ++ESESNP DLELK MK IKC+LC+CRANAYCESDE+SLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQ CV+PQNVASL+ 
Subjt:  SQESESNPEDLELKIMKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVASLQI

Query:  HHHHHHHHYSVSPSTRDLP----DDDQENQVVPLSPPPVSS
         H    H  S S +TRD      +DD+ENQVVPLSPPPVSS
Subjt:  HHHHHHHHYSVSPSTRDLP----DDDQENQVVPLSPPPVSS

KAG6573228.1 putative zinc finger protein CONSTANS-LIKE 11, partial [Cucurbita argyrosperma subsp. sororia]6.3e-3567.21Show/hide
Query:  MKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVASLQIHHHHHHHHYSVSPST
        MKK KC+LC  RAN YCESD+A+LCWSCDANVHSANFIVEKHSR LLC ICQSPTPWTATG KL PT+S+CQ C+  QN  ++  +H    H Y      
Subjt:  MKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVASLQIHHHHHHHHYSVSPST

Query:  RDLPDDDQENQVVPLSPPPVSS
        R   +DD ENQVVPLSPPPVSS
Subjt:  RDLPDDDQENQVVPLSPPPVSS

XP_008441923.1 PREDICTED: B-box zinc finger protein 32-like [Cucumis melo]3.7e-5982.52Show/hide
Query:  MPSSQESESNPEDLELKIMKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVAS
        MPSSQESESNP DLELKIMK IKC+LC+CRANAYCESDEASLCWSCD+NVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCV+PQNVAS
Subjt:  MPSSQESESNPEDLELKIMKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVAS

Query:  LQIHHHHHHHHYSVSPSTRDL------PDDDQENQVVPLSPPP
        LQ HH  H H  S S +TRD         DD+ENQVVPLSPPP
Subjt:  LQIHHHHHHHHYSVSPSTRDL------PDDDQENQVVPLSPPP

XP_023542180.1 zinc finger protein CONSTANS-LIKE 9-like [Cucurbita pepo subsp. pepo]5.7e-3666.67Show/hide
Query:  KIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVASLQIHHHHHHHHYSVSPSTRD
        K KC+LC  RAN YCESD+A+LCWSCDANVHSANFIVEKHSR LLC ICQSPTPWTATG KL PT+S+CQ C+  QN  +        +H  S     RD
Subjt:  KIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVASLQIHHHHHHHHYSVSPSTRD

Query:  LPDDDQENQVVPLSPPPVSS
          +DD ENQVVPLSPPPVSS
Subjt:  LPDDDQENQVVPLSPPPVSS

XP_038895968.1 zinc finger protein CONSTANS-LIKE 9-like [Benincasa hispida]4.3e-6080.69Show/hide
Query:  MPSSQESESNPEDLELKIMKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVAS
        MPSSQES+SNP DLE KIMKKIKC+LC+CRANAYCESD+ASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPT+SLCQFCVIPQNV S
Subjt:  MPSSQESESNPEDLELKIMKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVAS

Query:  LQIHHHHHHHHYSVSPSTRDL-----PDDDQENQVVPLSPPPVSS
        LQIHH +H H  S S S+RD        DD++NQVVP+SPPP SS
Subjt:  LQIHHHHHHHHYSVSPSTRDL-----PDDDQENQVVPLSPPPVSS

TrEMBL top hitse value%identityAlignment
A0A0A0LS80 B box-type domain-containing protein8.3e-4979.37Show/hide
Query:  MKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVASLQIHHHHHHHHYSVSPST
        MK IKC+LC+CRANAYCESDE+SLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQ CV+PQNVASL+  H    H  S S +T
Subjt:  MKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVASLQIHHHHHHHHYSVSPST

Query:  RDLP----DDDQENQVVPLSPPPVSS
        RD      +DD+ENQVVPLSPPPVSS
Subjt:  RDLP----DDDQENQVVPLSPPPVSS

A0A1S3B4I3 B-box zinc finger protein 32-like1.8e-5982.52Show/hide
Query:  MPSSQESESNPEDLELKIMKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVAS
        MPSSQESESNP DLELKIMK IKC+LC+CRANAYCESDEASLCWSCD+NVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCV+PQNVAS
Subjt:  MPSSQESESNPEDLELKIMKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVAS

Query:  LQIHHHHHHHHYSVSPSTRDL------PDDDQENQVVPLSPPP
        LQ HH  H H  S S +TRD         DD+ENQVVPLSPPP
Subjt:  LQIHHHHHHHHYSVSPSTRDL------PDDDQENQVVPLSPPP

A0A5A7UTR2 B-box zinc finger protein 32-like1.8e-5982.52Show/hide
Query:  MPSSQESESNPEDLELKIMKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVAS
        MPSSQESESNP DLELKIMK IKC+LC+CRANAYCESDEASLCWSCD+NVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCV+PQNVAS
Subjt:  MPSSQESESNPEDLELKIMKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVAS

Query:  LQIHHHHHHHHYSVSPSTRDL------PDDDQENQVVPLSPPP
        LQ HH  H H  S S +TRD         DD+ENQVVPLSPPP
Subjt:  LQIHHHHHHHHYSVSPSTRDL------PDDDQENQVVPLSPPP

A0A6J1GR34 zinc finger protein CONSTANS-LIKE 9-like8.9e-3564.75Show/hide
Query:  MKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVASLQIHHHHHHHHYSVSPST
        MKK KC+LC  RAN YCESD+A+LCWSCDANVHSANFIVEKHSR LLC ICQSPTPWTATG KL PT+S+CQ C+  QN               +V+ + 
Subjt:  MKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVASLQIHHHHHHHHYSVSPST

Query:  RDLPDDDQENQVVPLSPPPVSS
        +D  DDD+E QVVPLSP PVSS
Subjt:  RDLPDDDQENQVVPLSPPPVSS

A0A6J1JY69 zinc finger protein CONSTANS-LIKE 9-like3.7e-3364.75Show/hide
Query:  MKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVASLQIHHHHHHHHYSVSPST
        MKK KC+LC  RAN YCESD+A+LCWSCDANVHSANFIVEKHSR LLC ICQS TPWTATG KL PT+S+CQ C+  QN  +       +H   S     
Subjt:  MKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVASLQIHHHHHHHHYSVSPST

Query:  RDLPDDDQENQVVPLSPPPVSS
         D  ++D ENQVVPLSPPPVSS
Subjt:  RDLPDDDQENQVVPLSPPPVSS

SwissProt top hitse value%identityAlignment
O23379 Putative zinc finger protein CONSTANS-LIKE 111.2e-0737Show/hide
Query:  KCKLCNC-RANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQ-SPTPWTATGPKLGPTLSLCQFCVIPQNVASLQIHHHHHHHHYSVSPSTRD
        +C  C   +A  YC+SD A LC +CD NVHSAN + ++H+R LLC+ C   PT        +   +SLCQ C    +  +   H     + YS  PS  D
Subjt:  KCKLCNC-RANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQ-SPTPWTATGPKLGPTLSLCQFCVIPQNVASLQIHHHHHHHHYSVSPSTRD

Q9LJB7 B-box zinc finger protein 323.1e-0842.37Show/hide
Query:  CKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKL
        C+LC   A+ +C +D A LC SCDA  H++NF+  +H R ++C  C+S T    +GP L
Subjt:  CKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKL

Q9LRM4 B-box domain protein 311.2e-0746.15Show/hide
Query:  IKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPT
        ++C+LC+  A+ +CE+D A LC  CD  VH ANF+  +H R +LC  CQ  T
Subjt:  IKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPT

Q9LUA9 Zinc finger protein CONSTANS-LIKE 101.5e-0735.92Show/hide
Query:  CKLC-NCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIP----QNVASLQIHHHHHHHHYSVSPST
        C  C   R+  YC SD A LC SCD NVHSAN + ++HSR L+C+ C +         +    +SLCQ C       +N  +   H     + YS  PS+
Subjt:  CKLC-NCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIP----QNVASLQIHHHHHHHHYSVSPST

Query:  RDL
         +L
Subjt:  RDL

Q9SSE5 Zinc finger protein CONSTANS-LIKE 95.2e-0844.29Show/hide
Query:  CKLC-NCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFC
        C  C   R+  YC SD A LC SCD +VHSAN + ++HSR L+C+ C +     AT   +   +SLCQ C
Subjt:  CKLC-NCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFC

Arabidopsis top hitse value%identityAlignment
AT3G07650.1 CONSTANS-like 93.7e-0944.29Show/hide
Query:  CKLC-NCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFC
        C  C   R+  YC SD A LC SCD +VHSAN + ++HSR L+C+ C +     AT   +   +SLCQ C
Subjt:  CKLC-NCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFC

AT3G07650.2 CONSTANS-like 93.7e-0944.29Show/hide
Query:  CKLC-NCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFC
        C  C   R+  YC SD A LC SCD +VHSAN + ++HSR L+C+ C +     AT   +   +SLCQ C
Subjt:  CKLC-NCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFC

AT3G21150.1 B-box 322.2e-0942.37Show/hide
Query:  CKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKL
        C+LC   A+ +C +D A LC SCDA  H++NF+  +H R ++C  C+S T    +GP L
Subjt:  CKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKL

AT4G27310.1 B-box type zinc finger family protein3.7e-2564Show/hide
Query:  KCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQN
        KC LCN  A  YCESD+ASLCW CD  VH ANF+V KH+R LLC  CQS TPW ATG +LGPT S+C+ CV  +N
Subjt:  KCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQN

AT5G54470.1 B-box type zinc finger family protein4.5e-2344.88Show/hide
Query:  MKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVI--PQNVASLQIHHHHHHHHYSV--
        M K KC+LC   A  YCESD+ASLCW CD  VH ANF+V KH R LLC  CQS TPW A+G  LGPT+S+C+ C+     N +SL     + +    +  
Subjt:  MKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVI--PQNVASLQIHHHHHHHHYSV--

Query:  ---------SPSTRDLPDDDQENQVVP
                   S  D  +++ ENQVVP
Subjt:  ---------SPSTRDLPDDDQENQVVP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTCATCACAAGAATCCGAATCCAATCCAGAAGATTTGGAGTTAAAAATTATGAAGAAGATCAAGTGCAAGCTTTGCAATTGTAGAGCCAATGCATATTGTGAATC
AGACGAAGCCAGTTTGTGTTGGAGCTGCGACGCCAATGTTCATTCAGCCAATTTCATTGTGGAAAAGCATTCAAGAATTTTGCTATGCCAAATTTGCCAATCTCCCACTC
CTTGGACTGCCACTGGCCCCAAGCTTGGCCCTACCCTTTCCCTTTGTCAGTTTTGTGTTATTCCTCAAAATGTTGCCTCTCTACAAATTCATCATCATCACCACCATCAC
CATTATTCTGTTTCCCCCAGCACCAGAGACCTTCCTGACGATGATCAAGAGAATCAAGTGGTTCCGTTGTCCCCGCCGCCCGTTTCCAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCTCATCACAAGAATCCGAATCCAATCCAGAAGATTTGGAGTTAAAAATTATGAAGAAGATCAAGTGCAAGCTTTGCAATTGTAGAGCCAATGCATATTGTGAATC
AGACGAAGCCAGTTTGTGTTGGAGCTGCGACGCCAATGTTCATTCAGCCAATTTCATTGTGGAAAAGCATTCAAGAATTTTGCTATGCCAAATTTGCCAATCTCCCACTC
CTTGGACTGCCACTGGCCCCAAGCTTGGCCCTACCCTTTCCCTTTGTCAGTTTTGTGTTATTCCTCAAAATGTTGCCTCTCTACAAATTCATCATCATCACCACCATCAC
CATTATTCTGTTTCCCCCAGCACCAGAGACCTTCCTGACGATGATCAAGAGAATCAAGTGGTTCCGTTGTCCCCGCCGCCCGTTTCCAGCTAG
Protein sequenceShow/hide protein sequence
MPSSQESESNPEDLELKIMKKIKCKLCNCRANAYCESDEASLCWSCDANVHSANFIVEKHSRILLCQICQSPTPWTATGPKLGPTLSLCQFCVIPQNVASLQIHHHHHHH
HYSVSPSTRDLPDDDQENQVVPLSPPPVSS