CuGenDBv2

Gene ID	Lsi02G007480
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA ligase 1
Genome location	chr02:6882271..6884739
RNA-Seq Expression	Lsi02G007480
Synteny	Lsi02G007480
Gene Ontology terms	GO:0007131 - reciprocal meiotic recombination (biological process) GO:0099086 - synaptonemal structure (cellular component) GO:0016874 - ligase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004146600.1 DNA ligase 1 isoform X1 [Cucumis sativus]

2.7e-101

95.83

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Query:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL
        MGN+KIPT KTR+RKRVSDTDL SSDQRK+TNDDIDLDLDLSDDLKGIVSALNQIKERAHKDD KKNEETISSVATEM  MIEEVKSKLEKDRQNFAKAL
Subjt:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFL+TGSDEDFPADD
Subjt:  GSFLETGSDEDFPADD

XP_008442500.1 PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo]

1.9e-99

94.91

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Query:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL
        M N+KIPT KTR+RKRVSDTDL SS+QR RTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDD KKNEETISSVATEM  MIEEVKSKLEKDRQNFAKAL
Subjt:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFL+TGSDEDFPADD
Subjt:  GSFLETGSDEDFPADD

XP_022927498.1 DNA ligase 1 [Cucurbita moschata]

1.5e-96

92.13

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Query:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL
        MGN+KIP  KTRTRKRVSD+DL SSD+RKRTN+DIDLDLDLSDDLKGIVSALNQIKERA KDDQKKNEETISSV+TE+  MIEEVKSK EKDRQ+FAKAL
Subjt:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDD+TFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDF ADD
Subjt:  GSFLETGSDEDFPADD

XP_023001751.1 DNA ligase 1 [Cucurbita maxima]

8.9e-97

92.13

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Query:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL
        MGN+KIP  KTRTRKRVSD DL SSD+RKRTN+DIDLDLDLSDDLKGIVSALNQIKERA KDDQKKNEETISSV+TE+  MIEEVKSK EKDRQ+FAKAL
Subjt:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDD+TFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDFP DD
Subjt:  GSFLETGSDEDFPADD

XP_038895277.1 DNA ligase 1 isoform X1 [Benincasa hispida]

2.3e-100

94.91

Show/hide

Query:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL
        MGN+K PTTK R RKRVSDTDL SSDQRKRTNDD+DLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEM  MIE+VKSKLEKDRQNFAKAL
Subjt:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKF+ALYEKFTKEKATHLQAIKDTISKFEEEKERLF KYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDFPADD
Subjt:  GSFLETGSDEDFPADD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRW7 Uncharacterized protein

1.3e-101

95.83

Show/hide

Query:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL
        MGN+KIPT KTR+RKRVSDTDL SSDQRK+TNDDIDLDLDLSDDLKGIVSALNQIKERAHKDD KKNEETISSVATEM  MIEEVKSKLEKDRQNFAKAL
Subjt:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFL+TGSDEDFPADD
Subjt:  GSFLETGSDEDFPADD

A0A1S3B5C2 DNA ligase 1 isoform X1

9.3e-100

94.91

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Query:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL
        M N+KIPT KTR+RKRVSDTDL SS+QR RTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDD KKNEETISSVATEM  MIEEVKSKLEKDRQNFAKAL
Subjt:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFL+TGSDEDFPADD
Subjt:  GSFLETGSDEDFPADD

A0A5D3DS94 DNA ligase 1 isoform X1

9.3e-100

94.91

Show/hide

Query:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL
        M N+KIPT KTR+RKRVSDTDL SS+QR RTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDD KKNEETISSVATEM  MIEEVKSKLEKDRQNFAKAL
Subjt:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFL+TGSDEDFPADD
Subjt:  GSFLETGSDEDFPADD

A0A6J1EL64 DNA ligase 1

7.4e-97

92.13

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Query:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL
        MGN+KIP  KTRTRKRVSD+DL SSD+RKRTN+DIDLDLDLSDDLKGIVSALNQIKERA KDDQKKNEETISSV+TE+  MIEEVKSK EKDRQ+FAKAL
Subjt:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDD+TFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDF ADD
Subjt:  GSFLETGSDEDFPADD

A0A6J1KJH3 DNA ligase 1

4.3e-97

92.13

Show/hide

Query:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL
        MGN+KIP  KTRTRKRVSD DL SSD+RKRTN+DIDLDLDLSDDLKGIVSALNQIKERA KDDQKKNEETISSV+TE+  MIEEVKSK EKDRQ+FAKAL
Subjt:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDD+TFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDFP DD
Subjt:  GSFLETGSDEDFPADD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G33793.1 unknown protein

5.8e-62

61.29

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Query:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL
        M + +  T +TR     S   LK    + +  D  +LD+D+S D KGI+SAL Q +E+AH+D +KK EE+ISSV+TE+ + I+E+KSKLEK+RQNF+KAL
Subjt:  MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECEN LKDE AKF+ L++KF K+KA HLQ +KDTISKFEE+KERL+ +YEQLRK+E+++I+EQEK C EK+AQLEESLK+KK+ DKTFS+LRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLET-GSDEDFPADD
        GSFLE   SDE+FP D+
Subjt:  GSFLET-GSDEDFPADD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGGAACGTGAAAATTCCTACTACTAAAACAAGAACCAGGAAGCGAGTCTCCGACACCGATCTCAAGAGCTCCGATCAAAGGAAGCGGACCAACGATGATATCGACCT
CGATCTTGACCTTTCCGACGATCTCAAAGGAATAGTCTCGGCGCTGAATCAGATCAAAGAGAGAGCTCACAAGGACGACCAGAAGAAGAATGAAGAGACGATCTCAAGTG
TAGCGACTGAGATGAGCGCAATGATTGAGGAAGTGAAATCTAAACTTGAGAAGGACAGGCAAAATTTTGCAAAAGCTCTATCGAAAAGCTCAAAAGAGTGTGAAAACTGT
TTGAAGGACGAAACTGCTAAGTTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCTACACATCTCCAGGCCATAAAAGATACCATTTCCAAATTTGAAGAGGAGAA
AGAAAGGCTATTCGCAAAATATGAACAACTAAGAAAGAGAGAAAGGAGCCTGATATCTGAACAAGAAAAAGCTTGTGCTGAAAAGATTGCTCAATTAGAGGAGTCTTTGA
AAAGGAAAAAACAGGATGATAAGACTTTCAGTCTTTTGCGGAAGACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAGCTGATGATTGA

mRNA sequence

Show/hide mRNA sequence

CAAGATTCAGCGGGGTATTTAGAAGTCTTGGCAATTCAAAATTCCTAACGCTTCGAAACAGAACGGTTCTCCATCTTCAATTCTAAAGTTTTCTTCAACCTCCATCCAGA
TGGGGAACGTGAAAATTCCTACTACTAAAACAAGAACCAGGAAGCGAGTCTCCGACACCGATCTCAAGAGCTCCGATCAAAGGAAGCGGACCAACGATGATATCGACCTC
GATCTTGACCTTTCCGACGATCTCAAAGGAATAGTCTCGGCGCTGAATCAGATCAAAGAGAGAGCTCACAAGGACGACCAGAAGAAGAATGAAGAGACGATCTCAAGTGT
AGCGACTGAGATGAGCGCAATGATTGAGGAAGTGAAATCTAAACTTGAGAAGGACAGGCAAAATTTTGCAAAAGCTCTATCGAAAAGCTCAAAAGAGTGTGAAAACTGTT
TGAAGGACGAAACTGCTAAGTTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCTACACATCTCCAGGCCATAAAAGATACCATTTCCAAATTTGAAGAGGAGAAA
GAAAGGCTATTCGCAAAATATGAACAACTAAGAAAGAGAGAAAGGAGCCTGATATCTGAACAAGAAAAAGCTTGTGCTGAAAAGATTGCTCAATTAGAGGAGTCTTTGAA
AAGGAAAAAACAGGATGATAAGACTTTCAGTCTTTTGCGGAAGACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAGCTGATGATTGA

Protein sequence

Show/hide protein sequence

MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKALSKSSKECENC
LKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD

Lsi02G007480 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome