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Lsi02G007490 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G007490
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein LOL2
Genome locationchr02:6885596..6889191
RNA-Seq ExpressionLsi02G007490
SyntenyLsi02G007490
Gene Ontology termsGO:0009617 - response to bacterium (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146601.1 protein LOL2 isoform X2 [Cucumis sativus]7.1e-5685.5Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS
        MD HEIEKDEDDGPPPGWEPITP LPLPPPP LSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE             VLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CTSVTEIGVHNRRPPWSV QGQAAPP NFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

XP_008442544.1 PREDICTED: protein LOL2 isoform X4 [Cucumis melo]1.1e-5383.97Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS
        MD HEIEKDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLE             VLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CTSVTEIGVHNRRPPWSVQQGQAAPP NFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

XP_011653178.1 protein LOL2 isoform X1 [Cucumis sativus]1.8e-5484.85Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSS-DMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCS
        MD HEIEKDEDDGPPPGWEPITP LPLPPPP LSS DMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE             VLLMYPYGA+SVRCS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSS-DMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        SCTSVTEIGVHNRRPPWSV QGQAAPP NFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

XP_022927005.1 protein LOL2 [Cucurbita moschata]2.3e-5483.21Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS
        M+ HEIEKDEDDGPPPGWEPITPPLP PPP PLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVN+VLE             VLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CT VTEIGVHNRRPPWSVQQGQAAPP N VQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

XP_023001758.1 protein LOL2 [Cucurbita maxima]1.9e-5382.44Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS
        M+ HEIEKDEDDGPPPGWEPITPPLP  PP PLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVN+VLE             VLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CT VTEIGVHNRRPPWSVQQGQAAPP N VQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

TrEMBL top hitse value%identityAlignment
A0A0A0LXE3 Uncharacterized protein3.5e-5685.5Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS
        MD HEIEKDEDDGPPPGWEPITP LPLPPPP LSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE             VLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CTSVTEIGVHNRRPPWSV QGQAAPP NFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

A0A1S3B6Q2 protein LOL2 isoform X45.5e-5483.97Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS
        MD HEIEKDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLE             VLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CTSVTEIGVHNRRPPWSVQQGQAAPP NFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

A0A5A7UQS3 Protein LOL2 isoform X45.5e-5483.97Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS
        MD HEIEKDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLE             VLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CTSVTEIGVHNRRPPWSVQQGQAAPP NFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

A0A6J1EMN3 protein LOL21.1e-5483.21Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS
        M+ HEIEKDEDDGPPPGWEPITPPLP PPP PLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVN+VLE             VLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CT VTEIGVHNRRPPWSVQQGQAAPP N VQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

A0A6J1KRG9 protein LOL29.4e-5482.44Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS
        M+ HEIEKDEDDGPPPGWEPITPPLP  PP PLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVN+VLE             VLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CT VTEIGVHNRRPPWSVQQGQAAPP N VQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

SwissProt top hitse value%identityAlignment
O65426 Protein LOL24.2e-2751.59Show/hide
Query:  EIEKDEDDGPPPGWEPITPPLPL--------PPPPPLS-SDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATS
        E E++E++GPPPGWE    P P+        P P  +   + AQMVCG+CRRLL YL+G+++V+CS C TVN VLE             +LLMYPYGA +
Subjt:  EIEKDEDDGPPPGWEPITPPLPL--------PPPPPLS-SDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATS

Query:  VRCSSCTSVTEIGVHNRRPPWSVQQG
        VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  VRCSSCTSVTEIGVHNRRPPWSVQQG

P94077 Protein LSD11.1e-1439.09Show/hide
Query:  PPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV----------------------LEVLLMYPYGATSVRCSSCTSVTEIGVHNRRPPWSVQ
        PPPP   DMA ++CG CR +L Y +GA  V+CSCC T N V                          LMYPYGA+SV+C+ C  VT + + N R P    
Subjt:  PPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV----------------------LEVLLMYPYGATSVRCSSCTSVTEIGVHNRRPPWSVQ

Query:  Q--GQAAPPA
        +  G A PP+
Subjt:  Q--GQAAPPA

Q0J7V9 Protein LSD12.0e-1347.44Show/hide
Query:  PPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSSCTSVTEIG
        P   ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  +E             +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSSCTSVTEIG

Q704V3 Protein LOL52.1e-1846.67Show/hide
Query:  PGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSSCTSVTEIGVHNRRPP
        P  +   P +P PP P L+ ++ QMVCG+CR LL Y +GA YV C+CC T+N+VLE              LLMYP+GA +V+CS C  VTEIG  N R  
Subjt:  PGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSSCTSVTEIGVHNRRPP

Query:  WSVQQ
         S++Q
Subjt:  WSVQQ

Q93ZB1 Protein LOL11.4e-1450Show/hide
Query:  PPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSSCTSVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LE             +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATSVRCSSCTSVTEIG

Arabidopsis top hitse value%identityAlignment
AT4G20380.1 LSD1 zinc finger family protein7.7e-1639.09Show/hide
Query:  PPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV----------------------LEVLLMYPYGATSVRCSSCTSVTEIGVHNRRPPWSVQ
        PPPP   DMA ++CG CR +L Y +GA  V+CSCC T N V                          LMYPYGA+SV+C+ C  VT + + N R P    
Subjt:  PPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV----------------------LEVLLMYPYGATSVRCSSCTSVTEIGVHNRRPPWSVQ

Query:  Q--GQAAPPA
        +  G A PP+
Subjt:  Q--GQAAPPA

AT4G20380.2 LSD1 zinc finger family protein7.7e-1639.09Show/hide
Query:  PPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV----------------------LEVLLMYPYGATSVRCSSCTSVTEIGVHNRRPPWSVQ
        PPPP   DMA ++CG CR +L Y +GA  V+CSCC T N V                          LMYPYGA+SV+C+ C  VT + + N R P    
Subjt:  PPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV----------------------LEVLLMYPYGATSVRCSSCTSVTEIGVHNRRPPWSVQ

Query:  Q--GQAAPPA
        +  G A PP+
Subjt:  Q--GQAAPPA

AT4G20380.3 LSD1 zinc finger family protein7.7e-1639.09Show/hide
Query:  PPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV----------------------LEVLLMYPYGATSVRCSSCTSVTEIGVHNRRPPWSVQ
        PPPP   DMA ++CG CR +L Y +GA  V+CSCC T N V                          LMYPYGA+SV+C+ C  VT + + N R P    
Subjt:  PPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV----------------------LEVLLMYPYGATSVRCSSCTSVTEIGVHNRRPPWSVQ

Query:  Q--GQAAPPA
        +  G A PP+
Subjt:  Q--GQAAPPA

AT4G20380.4 LSD1 zinc finger family protein7.7e-1639.09Show/hide
Query:  PPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV----------------------LEVLLMYPYGATSVRCSSCTSVTEIGVHNRRPPWSVQ
        PPPP   DMA ++CG CR +L Y +GA  V+CSCC T N V                          LMYPYGA+SV+C+ C  VT + + N R P    
Subjt:  PPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV----------------------LEVLLMYPYGATSVRCSSCTSVTEIGVHNRRPPWSVQ

Query:  Q--GQAAPPA
        +  G A PP+
Subjt:  Q--GQAAPPA

AT4G21610.1 lsd one like 23.0e-2851.59Show/hide
Query:  EIEKDEDDGPPPGWEPITPPLPL--------PPPPPLS-SDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATS
        E E++E++GPPPGWE    P P+        P P  +   + AQMVCG+CRRLL YL+G+++V+CS C TVN VLE             +LLMYPYGA +
Subjt:  EIEKDEDDGPPPGWEPITPPLPL--------PPPPPLS-SDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------VLLMYPYGATS

Query:  VRCSSCTSVTEIGVHNRRPPWSVQQG
        VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  VRCSSCTSVTEIGVHNRRPPWSVQQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCCCATGAAATCGAGAAAGACGAAGACGACGGGCCTCCGCCTGGATGGGAACCCATCACTCCGCCGCTGCCGCTACCACCGCCGCCGCCACTTTCTTCTGATAT
GGCACAAATGGTCTGTGGTACCTGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCTAGATATGTTCAGTGCTCTTGCTGTTCAACAGTTAACTTTGTGTTAGAAGTGTTGC
TTATGTACCCATATGGAGCAACATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACAGAAATTGGGGTGCATAATAGACGCCCACCGTGGTCTGTCCAGCAAGGACAAGCA
GCCCCTCCTGCCAACTTTGTCCAGTAG
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAAAAAAATTCAACCTAAAATGGCATAAGAAAACAATTGAGAACTGAAGTCAGTGCGCCAACCAATTGCTCTCCGCATTAGCGCGGGACGGCGTTGTGGTTCA
CAGTCAGTTCTCTCATACATAGAAAACATGATCGATTCTTAGACGACAGATCGAGAAAATGGATTCCCATGAAATCGAGAAAGACGAAGACGACGGGCCTCCGCCTGGAT
GGGAACCCATCACTCCGCCGCTGCCGCTACCACCGCCGCCGCCACTTTCTTCTGATATGGCACAAATGGTCTGTGGTACCTGCCGTCGCCTGCTTAAGTATTTAAAGGGA
GCTAGATATGTTCAGTGCTCTTGCTGTTCAACAGTTAACTTTGTGTTAGAAGTGTTGCTTATGTACCCATATGGAGCAACATCAGTTAGGTGTTCCTCGTGTACCAGTGT
GACAGAAATTGGGGTGCATAATAGACGCCCACCGTGGTCTGTCCAGCAAGGACAAGCAGCCCCTCCTGCCAACTTTGTCCAGTAGAGTCTGTTCATCTATGAGATACTTC
CGCTTAAGAAAAGATGTGGCATTTTCTGAAATTTTCTTTTCCGTTTTGAGCCTTAATCAGCACGCACAGAAGGAAAACAACATTATCAATAATTACTGGCACTTTTATTT
CTTTATTATTAGTTATTGAGTTTATGTAAAGAAACTTAGGCACTGACCTTCCCAACTTCTAACATGTTTTTATCTCAAGTTGTTGACTTGGCTTTGCTTTGTGACTTGAC
TTCCTTCTTATGCTCATTTTTTATGTGCTGATTGGAGCCTTAGTTGGTGCTGCCAATCTCTCAGGCGTTCTTCATTGTAATTTGTAAATGATAGGAGCCTTTCGTATTGT
CAAATTGTTGTGGCTTAATTTAATGAGATGAACCGTCCACATTTTATCTTC
Protein sequenceShow/hide protein sequence
MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEVLLMYPYGATSVRCSSCTSVTEIGVHNRRPPWSVQQGQA
APPANFVQ