; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G007690 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G007690
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSquamosa promoter-binding-like protein
Genome locationchr02:7082863..7083733
RNA-Seq ExpressionLsi02G007690
SyntenyLsi02G007690
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009908 - flower development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004333 - SBP domain
IPR036893 - SBP domain superfamily
IPR044817 - Squamosa promoter-binding-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057003.1 squamosa promoter-binding-like protein 3 [Cucumis melo var. makuwa]6.6e-4685.61Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR
        MATGKADGKRRLNYYEM   EEEDEE+EEEEEEE+EDE+QEID   LGF GDFNKKKK+LTSGGSSNKKSGSG+G    AAAPP CQADNCNADLSGSKR
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR

Query:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        Y+RRHKVCEFHAKAPAVAVAGI QRFCQQCSR
Subjt:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR

XP_008442764.1 PREDICTED: squamosa promoter-binding-like protein 3 [Cucumis melo]6.6e-4685.61Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR
        MATGKADGKRRLNYYEM   EEEDEE+EEEEEEE+EDE+QEID   LGF GDFNKKKK+LTSGGSSNKKSGSG+G    AAAPP CQADNCNADLSGSKR
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR

Query:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        Y+RRHKVCEFHAKAPAVAVAGI QRFCQQCSR
Subjt:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR

XP_011653273.1 squamosa promoter-binding-like protein 3 [Cucumis sativus]2.4e-4379.39Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGG--AAAAPPSCQADNCNADLSGSKRY
        MATGKADGKRRL+YYEMEE++EED       EEE+EDE+QEIDAELGF GDFNKKKKI TSGGSSNKKS S +GG  AAA PP CQADNCNADLS SKRY
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGG--AAAAPPSCQADNCNADLSGSKRY

Query:  YRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        +RRHKVCEFHAKAP V V GI QRFCQQCSR
Subjt:  YRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR

XP_038894994.1 squamosa promoter-binding-like protein 3 isoform X1 [Benincasa hispida]3.5e-4789.15Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR
        MATGKADGKRRLNYYEMEE+EEEDEEEEEEEE+ EE   Q+I  ELGF GDFNKKKKILTSG SSNKKSGSGYGGAAAA PSCQADNCNADLSGSKRY+R
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR

Query:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        RHKVCEFHAKAPAVAVAGI QRFCQQCSR
Subjt:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSR

XP_038894995.1 squamosa promoter-binding protein 2-like isoform X2 [Benincasa hispida]3.5e-4789.15Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR
        MATGKADGKRRLNYYEMEE+EEEDEEEEEEEE+ EE   Q+I  ELGF GDFNKKKKILTSG SSNKKSGSGYGGAAAA PSCQADNCNADLSGSKRY+R
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR

Query:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        RHKVCEFHAKAPAVAVAGI QRFCQQCSR
Subjt:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSR

TrEMBL top hitse value%identityAlignment
A0A0A0LSD9 Squamosa promoter-binding-like protein1.1e-4379.39Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGG--AAAAPPSCQADNCNADLSGSKRY
        MATGKADGKRRL+YYEMEE++EED       EEE+EDE+QEIDAELGF GDFNKKKKI TSGGSSNKKS S +GG  AAA PP CQADNCNADLS SKRY
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGG--AAAAPPSCQADNCNADLSGSKRY

Query:  YRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        +RRHKVCEFHAKAP V V GI QRFCQQCSR
Subjt:  YRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR

A0A1S3B6H6 squamosa promoter-binding-like protein 33.2e-4685.61Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR
        MATGKADGKRRLNYYEM   EEEDEE+EEEEEEE+EDE+QEID   LGF GDFNKKKK+LTSGGSSNKKSGSG+G    AAAPP CQADNCNADLSGSKR
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR

Query:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        Y+RRHKVCEFHAKAPAVAVAGI QRFCQQCSR
Subjt:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR

A0A5D3DT58 Squamosa promoter-binding-like protein 33.2e-4685.61Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR
        MATGKADGKRRLNYYEM   EEEDEE+EEEEEEE+EDE+QEID   LGF GDFNKKKK+LTSGGSSNKKSGSG+G    AAAPP CQADNCNADLSGSKR
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR

Query:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        Y+RRHKVCEFHAKAPAVAVAGI QRFCQQCSR
Subjt:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR

A0A6J1EH14 Squamosa promoter-binding-like protein9.1e-4176.74Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR
        MATGKADGKRRLNYY+M           EEEEEEEE+E + +D ELGF GDFNKKKK L SGG SNKKSGSGYGGAA A PSCQADNCNADLS SKRY+ 
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR

Query:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        RHKVCEFHAKA AV VAGI QRFCQQCSR
Subjt:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSR

A0A6J1KHJ1 Squamosa promoter-binding-like protein1.2e-4075.97Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR
        MATGKADGKRRLNYY+M            EEEEEEE+E + +D ELGF GDFNKKKK L+SGG SNKKSGSGYGGAA A PSCQADNCNADLS SKRY+ 
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR

Query:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        RHKVCEFHAKA AV VAGI QRFCQQCSR
Subjt:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSR

SwissProt top hitse value%identityAlignment
A2YFT9 Squamosa promoter-binding-like protein 108.0e-1868.33Show/hide
Query:  GSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        G G+GGA   PP CQA+ C ADLSG+K Y+RRHKVCE+HAKA  VA +G  QRFCQQCSR
Subjt:  GSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR

Q0DAE8 Squamosa promoter-binding-like protein 108.0e-1868.33Show/hide
Query:  GSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        G G+GGA   PP CQA+ C ADLSG+K Y+RRHKVCE+HAKA  VA +G  QRFCQQCSR
Subjt:  GSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR

Q0E3F8 Squamosa promoter-binding-like protein 59.7e-1667.74Show/hide
Query:  GYGGAAAA----PPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        G G AAAA    PP CQA+ C ADLS +K Y+RRHKVC+FHAKA AV  AG  QRFCQQCSR
Subjt:  GYGGAAAA----PPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR

Q38740 Squamosa promoter-binding protein 23.7e-1551.79Show/hide
Query:  EEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGY---GGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVA
        +E  + EEEEE E+EE+E+QE   ++ F     KKKK L  G  S  KSG  +   GG   A P C  +NC ADL   K+YY+RH+VCE HAKAP V+V 
Subjt:  EEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGY---GGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVA

Query:  GIPQRFCQQCSR
        G+ QRFCQQCSR
Subjt:  GIPQRFCQQCSR

Q7EXZ2 Squamosa promoter-binding-like protein 142.2e-1556.79Show/hide
Query:  SSNKKSGSGYGG---------AAAA------PPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        SS+K +G G GG         AAAA      PP CQ + C ADLSG K YY RHKVC  H+KAP V VAG+ QRFCQQCSR
Subjt:  SSNKKSGSGYGG---------AAAA------PPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR

Arabidopsis top hitse value%identityAlignment
AT1G02065.1 squamosa promoter binding protein-like 87.6e-1660Show/hide
Query:  KKSGSGYGGAA--AAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        ++S  G  G A   + P CQA+ CNADLS +K Y+RRHKVCEFH+KA  V  AG+ QRFCQQCSR
Subjt:  KKSGSGYGGAA--AAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR

AT1G02065.2 squamosa promoter binding protein-like 89.0e-1758.82Show/hide
Query:  KKSGSGYGGAA--AAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRLTP
        ++S  G  G A   + P CQA+ CNADLS +K Y+RRHKVCEFH+KA  V  AG+ QRFCQQCSR  P
Subjt:  KKSGSGYGGAA--AAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRLTP

AT2G33810.1 squamosa promoter binding protein-like 34.6e-1341.86Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR
        M   KA+GKR L   E+ E+EEE+EE E+E+  EEE+                KK+K                G A ++   CQ ++C AD+S +K+Y++
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR

Query:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        RHKVC+FHAKAP V ++G+ QRFCQQCSR
Subjt:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSR

AT2G42200.1 squamosa promoter binding protein-like 92.2e-1552.86Show/hide
Query:  TSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        +SGG SN++   G  G +   P CQ + C  DL+ +K YY RH+VC  H+K P V VAGI QRFCQQCSR
Subjt:  TSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR

AT3G15270.1 squamosa promoter binding protein-like 51.3e-1243.3Show/hide
Query:  EEDEQQEIDAELGFEGDFNKKKKIL--TSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        EE+ +  +D E    GD +K+KK++    G S+++               CQ D C  +L+ +K+YYRRH+VCE HAKA A  VAG+ QRFCQQCSR
Subjt:  EEDEQQEIDAELGFEGDFNKKKKIL--TSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTGGAAAAGCTGATGGAAAAAGGAGGCTAAATTATTACGAAATGGAGGAACAGGAGGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAAGA
TGAGCAACAAGAAATTGATGCAGAATTAGGGTTTGAAGGGGATTTCAATAAGAAGAAGAAAATTCTGACTTCTGGGGGTTCTTCTAATAAAAAATCAGGATCTGGGTACG
GCGGAGCTGCGGCGGCGCCGCCCTCCTGTCAGGCGGATAATTGCAATGCTGATCTGTCCGGTTCAAAGCGGTACTATCGCCGTCATAAGGTCTGTGAGTTTCATGCTAAG
GCTCCGGCGGTTGCGGTGGCCGGAATCCCCCAGCGGTTCTGTCAACAATGCAGCAGATTAACTCCAGCTCTTAATTGGTGCAAATTTCCTCATCTCTTTGATGGGGATAA
TCTTTGGAGTTTGGTTGGTTGA
mRNA sequenceShow/hide mRNA sequence
CAAACCCATTTGCCCTTTTCTTTTTTGGTTTTACCCTCTTCCACTGAGAGGACAAAAAATGGAGTTTGTGGTCCTGAGTCTTCACCTCTAGTACTACTAATACTACTACT
AAATGTCCTTCTCTTTTTTTTTTCTTTCCTCTGAAGCAACCAAATTTCTTGCTTCTTCCCTTTTTCTTTTCTTCCTCTTAATTACTCTCTGAGTATCTCTCTGTATCTTG
GAGCAGCCTTTTTTTTTTTTTTTGTAATGGCCACTGGAAAAGCTGATGGAAAAAGGAGGCTAAATTATTACGAAATGGAGGAACAGGAGGAAGAAGATGAAGAAGAAGAA
GAAGAAGAAGAGGAGGAGGAGGAAGATGAGCAACAAGAAATTGATGCAGAATTAGGGTTTGAAGGGGATTTCAATAAGAAGAAGAAAATTCTGACTTCTGGGGGTTCTTC
TAATAAAAAATCAGGATCTGGGTACGGCGGAGCTGCGGCGGCGCCGCCCTCCTGTCAGGCGGATAATTGCAATGCTGATCTGTCCGGTTCAAAGCGGTACTATCGCCGTC
ATAAGGTCTGTGAGTTTCATGCTAAGGCTCCGGCGGTTGCGGTGGCCGGAATCCCCCAGCGGTTCTGTCAACAATGCAGCAGATTAACTCCAGCTCTTAATTGGTGCAAA
TTTCCTCATCTCTTTGATGGGGATAATCTTTGGAGTTTGGTTGGTTGA
Protein sequenceShow/hide protein sequence
MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAK
APAVAVAGIPQRFCQQCSRLTPALNWCKFPHLFDGDNLWSLVG