; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G007900 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G007900
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionnuclear envelope pore membrane protein POM 121-like
Genome locationchr02:7294995..7297459
RNA-Seq ExpressionLsi02G007900
SyntenyLsi02G007900
Gene Ontology termsGO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR040356 - SPEAR family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057023.1 CREB-regulated transcription coactivator 1-like [Cucumis melo var. makuwa]5.6e-5570.2Show/hide
Query:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHDSFITQFQDISP--PPSLNPPRPPPPPPPPPLVPIIT-----PPRDYASWSNNLPLFPTF
        M+KTQAKR RIPRRGPGVAELEKILKEQE G  G +   H S  T     +   P SLNPP PPPPPPPPPLV I+T     PPRDY SW+NNLPLFPT 
Subjt:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHDSFITQFQDISP--PPSLNPPRPPPPPPPPPLVPIIT-----PPRDYASWSNNLPLFPTF

Query:  EFIPPP-LPTAAAASAKKPLFPTTRISD-SQLNFPPHFFPSFQYSASSLNL-EYYNSMVNINPGSASSCPSATSSTA-RYFRQIEHPSSQISTDFNNI
        EFIPPP LPT A   A+KPLFPTTRIS+ SQLN  P+F P+FQ+SASS N  +YYN MVNIN GS SSCPSATSS+A RY R+IEHPSSQISTDFNNI
Subjt:  EFIPPP-LPTAAAASAKKPLFPTTRISD-SQLNFPPHFFPSFQYSASSLNL-EYYNSMVNINPGSASSCPSATSSTA-RYFRQIEHPSSQISTDFNNI

XP_008443003.1 PREDICTED: uncharacterized protein DDB_G0271670-like [Cucumis melo]5.6e-5570.2Show/hide
Query:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHDSFITQFQDISP--PPSLNPPRPPPPPPPPPLVPIIT-----PPRDYASWSNNLPLFPTF
        M+KTQAKR RIPRRGPGVAELEKILKEQE G  G +   H S  T     +   P SLNPP PPPPPPPPPLV I+T     PPRDY SW+NNLPLFPT 
Subjt:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHDSFITQFQDISP--PPSLNPPRPPPPPPPPPLVPIIT-----PPRDYASWSNNLPLFPTF

Query:  EFIPPP-LPTAAAASAKKPLFPTTRISD-SQLNFPPHFFPSFQYSASSLNL-EYYNSMVNINPGSASSCPSATSSTA-RYFRQIEHPSSQISTDFNNI
        EFIPPP LPT A   A+KPLFPTTRIS+ SQLN  P+F P+FQ+SASS N  +YYN MVNIN GS SSCPSATSS+A RY R+IEHPSSQISTDFNNI
Subjt:  EFIPPP-LPTAAAASAKKPLFPTTRISD-SQLNFPPHFFPSFQYSASSLNL-EYYNSMVNINPGSASSCPSATSSTA-RYFRQIEHPSSQISTDFNNI

XP_022927210.1 nuclear envelope pore membrane protein POM 121-like [Cucurbita moschata]1.5e-5266.5Show/hide
Query:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHD----------SFITQFQDISP---PPSLNPPRPPPPPPPPPLVPIITPP--RDYASWSN
        MKKTQ KRHRIPRRGPGVAELEKILKEQEGG  GG G G            SF    +  SP   P SLNPPRPPPPPPPPPL+P   PP  RDYASWS 
Subjt:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHD----------SFITQFQDISP---PPSLNPPRPPPPPPPPPLVPIITPP--RDYASWSN

Query:  NLPLFPTFEFIPP--PLPTAAAASAKKPLFPTTRISDSQLNFPPHFFPSFQYSASSLNLEYYNSMVNINPGSASSCPSATSSTARYFRQIEHPSSQISTD
        NLPLFPT +FIPP  P PT AAA+ +KPLFPTTR SD+Q+N PPHFFP+FQYSASS     +N M+NI PG      SATS  ARY+RQIEHPSSQIST 
Subjt:  NLPLFPTFEFIPP--PLPTAAAASAKKPLFPTTRISDSQLNFPPHFFPSFQYSASSLNLEYYNSMVNINPGSASSCPSATSSTARYFRQIEHPSSQISTD

Query:  FNN
        FNN
Subjt:  FNN

XP_031738182.1 uncharacterized protein LOC105434463 [Cucumis sativus]3.0e-5668.34Show/hide
Query:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGG----DGGAGQGHDSFITQFQDISPPPSLNPPRPPPPPPPPPLVPIITP-----PRDYASWSNNLPLFP
        M+KTQAKR RIPRRGPGVAELEKILKEQE G        +    +S  T     + P SLNPPRPPPPPPPPPLV I+TP     PRDY +WSNNLPLFP
Subjt:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGG----DGGAGQGHDSFITQFQDISPPPSLNPPRPPPPPPPPPLVPIITP-----PRDYASWSNNLPLFP

Query:  TFEFIPPP-LPTAAAASAKKPLFPTTRISDSQLNFPPHFFPSFQYSASSLNL-EYYNSMVNINPGSASSCPSATSSTA-RYFRQIEHPSSQISTDFNNI
        T EFIPPP LPT      +KPLFPTTR+S+SQLN  P+F PSFQYSASS N  +YYN MVN+N GS SSCPSATSS+A R+FR+IEHPSSQISTDFNNI
Subjt:  TFEFIPPP-LPTAAAASAKKPLFPTTRISDSQLNFPPHFFPSFQYSASSLNL-EYYNSMVNINPGSASSCPSATSSTA-RYFRQIEHPSSQISTDFNNI

XP_038895159.1 uncharacterized protein DDB_G0271670-like [Benincasa hispida]1.5e-6374.5Show/hide
Query:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHDSFITQFQDISPPP---------SLNPPRPPPPPPPPPLVPIITPPRDY-ASWSNNLPLF
        MKK QAKR RIPRRGPGVAELEKILKEQEG                 QDI  PP         SLNPPRPPPPPPPPPLV    P  DY ASWSNNLPLF
Subjt:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHDSFITQFQDISPPP---------SLNPPRPPPPPPPPPLVPIITPPRDY-ASWSNNLPLF

Query:  PTFEFIPPPLPTAAA---ASAKKPLFPTTRISDSQLNFPPHFFPSFQYSASSLNLEYYNSMVNINPGSASSCPSATSSTARYFRQIEHPSSQISTDFNNI
        PT EFIPPPLP +AA   ASAKKPLFPTTRISDSQL F PHFFPSFQYSASSLN+E YNSMVNINPGSASSCPSATSS  RYFR+IEHPSSQIS+DFNNI
Subjt:  PTFEFIPPPLPTAAA---ASAKKPLFPTTRISDSQLNFPPHFFPSFQYSASSLNLEYYNSMVNINPGSASSCPSATSSTARYFRQIEHPSSQISTDFNNI

TrEMBL top hitse value%identityAlignment
A0A0A0LSF6 Uncharacterized protein1.4e-5668.34Show/hide
Query:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGG----DGGAGQGHDSFITQFQDISPPPSLNPPRPPPPPPPPPLVPIITP-----PRDYASWSNNLPLFP
        M+KTQAKR RIPRRGPGVAELEKILKEQE G        +    +S  T     + P SLNPPRPPPPPPPPPLV I+TP     PRDY +WSNNLPLFP
Subjt:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGG----DGGAGQGHDSFITQFQDISPPPSLNPPRPPPPPPPPPLVPIITP-----PRDYASWSNNLPLFP

Query:  TFEFIPPP-LPTAAAASAKKPLFPTTRISDSQLNFPPHFFPSFQYSASSLNL-EYYNSMVNINPGSASSCPSATSSTA-RYFRQIEHPSSQISTDFNNI
        T EFIPPP LPT      +KPLFPTTR+S+SQLN  P+F PSFQYSASS N  +YYN MVN+N GS SSCPSATSS+A R+FR+IEHPSSQISTDFNNI
Subjt:  TFEFIPPP-LPTAAAASAKKPLFPTTRISDSQLNFPPHFFPSFQYSASSLNL-EYYNSMVNINPGSASSCPSATSSTA-RYFRQIEHPSSQISTDFNNI

A0A1S3B6J8 uncharacterized protein DDB_G0271670-like2.7e-5570.2Show/hide
Query:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHDSFITQFQDISP--PPSLNPPRPPPPPPPPPLVPIIT-----PPRDYASWSNNLPLFPTF
        M+KTQAKR RIPRRGPGVAELEKILKEQE G  G +   H S  T     +   P SLNPP PPPPPPPPPLV I+T     PPRDY SW+NNLPLFPT 
Subjt:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHDSFITQFQDISP--PPSLNPPRPPPPPPPPPLVPIIT-----PPRDYASWSNNLPLFPTF

Query:  EFIPPP-LPTAAAASAKKPLFPTTRISD-SQLNFPPHFFPSFQYSASSLNL-EYYNSMVNINPGSASSCPSATSSTA-RYFRQIEHPSSQISTDFNNI
        EFIPPP LPT A   A+KPLFPTTRIS+ SQLN  P+F P+FQ+SASS N  +YYN MVNIN GS SSCPSATSS+A RY R+IEHPSSQISTDFNNI
Subjt:  EFIPPP-LPTAAAASAKKPLFPTTRISD-SQLNFPPHFFPSFQYSASSLNL-EYYNSMVNINPGSASSCPSATSSTA-RYFRQIEHPSSQISTDFNNI

A0A5A7UM91 CREB-regulated transcription coactivator 1-like2.7e-5570.2Show/hide
Query:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHDSFITQFQDISP--PPSLNPPRPPPPPPPPPLVPIIT-----PPRDYASWSNNLPLFPTF
        M+KTQAKR RIPRRGPGVAELEKILKEQE G  G +   H S  T     +   P SLNPP PPPPPPPPPLV I+T     PPRDY SW+NNLPLFPT 
Subjt:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHDSFITQFQDISP--PPSLNPPRPPPPPPPPPLVPIIT-----PPRDYASWSNNLPLFPTF

Query:  EFIPPP-LPTAAAASAKKPLFPTTRISD-SQLNFPPHFFPSFQYSASSLNL-EYYNSMVNINPGSASSCPSATSSTA-RYFRQIEHPSSQISTDFNNI
        EFIPPP LPT A   A+KPLFPTTRIS+ SQLN  P+F P+FQ+SASS N  +YYN MVNIN GS SSCPSATSS+A RY R+IEHPSSQISTDFNNI
Subjt:  EFIPPP-LPTAAAASAKKPLFPTTRISD-SQLNFPPHFFPSFQYSASSLNL-EYYNSMVNINPGSASSCPSATSSTA-RYFRQIEHPSSQISTDFNNI

A0A6J1EGJ1 nuclear envelope pore membrane protein POM 121-like7.4e-5366.5Show/hide
Query:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHD----------SFITQFQDISP---PPSLNPPRPPPPPPPPPLVPIITPP--RDYASWSN
        MKKTQ KRHRIPRRGPGVAELEKILKEQEGG  GG G G            SF    +  SP   P SLNPPRPPPPPPPPPL+P   PP  RDYASWS 
Subjt:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHD----------SFITQFQDISP---PPSLNPPRPPPPPPPPPLVPIITPP--RDYASWSN

Query:  NLPLFPTFEFIPP--PLPTAAAASAKKPLFPTTRISDSQLNFPPHFFPSFQYSASSLNLEYYNSMVNINPGSASSCPSATSSTARYFRQIEHPSSQISTD
        NLPLFPT +FIPP  P PT AAA+ +KPLFPTTR SD+Q+N PPHFFP+FQYSASS     +N M+NI PG      SATS  ARY+RQIEHPSSQIST 
Subjt:  NLPLFPTFEFIPP--PLPTAAAASAKKPLFPTTRISDSQLNFPPHFFPSFQYSASSLNLEYYNSMVNINPGSASSCPSATSSTARYFRQIEHPSSQISTD

Query:  FNN
        FNN
Subjt:  FNN

A0A6J1KHF7 trinucleotide repeat-containing gene 18 protein-like1.1e-5166.67Show/hide
Query:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHD---------SFITQFQDISP---PPSLNPPRPPPPPPPPPLVPIITPP--RDYASWSNN
        MKKT  KRHRIPRRGPGVAELEKILKEQEGG  GG G G D         SF    +  SP   P SLNPPRPPPPPPPPPL+P   PP  RDYASWS N
Subjt:  MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHD---------SFITQFQDISP---PPSLNPPRPPPPPPPPPLVPIITPP--RDYASWSNN

Query:  LPLFPTFEFIPPPLPT----AAAASAKKPLFPTTRISDSQLNFPPHFFPSFQYSASSLNLEYYNSMVNINPGSASSCPSATSSTARYFRQIEHPSSQIST
        LPLFPT +FIPP LPT    AAAA+A+KPLFPTTR SD+Q+N PPHFFP+FQYSASS NL     M+NI PG      SATS   RY+RQIEHPSSQIST
Subjt:  LPLFPTFEFIPPPLPT----AAAASAKKPLFPTTRISDSQLNFPPHFFPSFQYSASSLNLEYYNSMVNINPGSASSCPSATSSTARYFRQIEHPSSQIST

Query:  DFNN
         FN+
Subjt:  DFNN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAAACTCAAGCCAAACGACATCGTATTCCCAGGAGAGGACCTGGCGTTGCAGAGCTTGAGAAGATTTTGAAGGAACAAGAAGGCGGCGGTGACGGCGGTGCCGG
CCAAGGTCATGACTCCTTCATTACCCAATTTCAAGACATTTCTCCACCGCCGTCGTTAAACCCTCCCCGGCCACCGCCGCCGCCGCCTCCTCCGCCACTTGTGCCAATAA
TCACGCCGCCGCGTGACTATGCTTCTTGGTCAAATAATCTTCCGTTGTTCCCAACTTTTGAATTCATTCCGCCCCCTCTACCAACCGCCGCCGCTGCCTCCGCCAAAAAA
CCCTTGTTTCCAACAACCCGAATATCCGATTCCCAATTGAATTTTCCTCCGCATTTTTTCCCCAGTTTTCAATATTCGGCTTCTTCTCTCAATCTTGAATATTATAATTC
AATGGTGAATATTAATCCAGGATCTGCCTCATCGTGTCCGTCAGCCACGTCATCAACGGCGAGATATTTTCGTCAAATAGAGCACCCTTCAAGCCAAATATCTACTGATT
TCAACAACATATGA
mRNA sequenceShow/hide mRNA sequence
GATAAACCCGAGAAAGCCAAAGAGAAAGAAGAGGACGAGAAGATTCAGATAAACGCCTGAAATTCCGTGCTTTAAAAAAAACTCTTTTTTTTTCTTTGAACAGGGGAAAA
ATGTAAGAGTAATGTGAATATATATTGTGCCAAAAAAAAAAAGTGAGATGAAGAAAACTCAAGCCAAACGACATCGTATTCCCAGGAGAGGACCTGGCGTTGCAGAGCTT
GAGAAGATTTTGAAGGAACAAGAAGGCGGCGGTGACGGCGGTGCCGGCCAAGGTCATGACTCCTTCATTACCCAATTTCAAGACATTTCTCCACCGCCGTCGTTAAACCC
TCCCCGGCCACCGCCGCCGCCGCCTCCTCCGCCACTTGTGCCAATAATCACGCCGCCGCGTGACTATGCTTCTTGGTCAAATAATCTTCCGTTGTTCCCAACTTTTGAAT
TCATTCCGCCCCCTCTACCAACCGCCGCCGCTGCCTCCGCCAAAAAACCCTTGTTTCCAACAACCCGAATATCCGATTCCCAATTGAATTTTCCTCCGCATTTTTTCCCC
AGTTTTCAATATTCGGCTTCTTCTCTCAATCTTGAATATTATAATTCAATGGTGAATATTAATCCAGGATCTGCCTCATCGTGTCCGTCAGCCACGTCATCAACGGCGAG
ATATTTTCGTCAAATAGAGCACCCTTCAAGCCAAATATCTACTGATTTCAACAACATATGA
Protein sequenceShow/hide protein sequence
MKKTQAKRHRIPRRGPGVAELEKILKEQEGGGDGGAGQGHDSFITQFQDISPPPSLNPPRPPPPPPPPPLVPIITPPRDYASWSNNLPLFPTFEFIPPPLPTAAAASAKK
PLFPTTRISDSQLNFPPHFFPSFQYSASSLNLEYYNSMVNINPGSASSCPSATSSTARYFRQIEHPSSQISTDFNNI