; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G007920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G007920
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription factor TCP10-like
Genome locationchr02:7310750..7311355
RNA-Seq ExpressionLsi02G007920
SyntenyLsi02G007920
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:2000032 - regulation of secondary shoot formation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR005333 - Transcription factor, TCP
IPR017887 - Transcription factor TCP subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583970.1 Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia]8.5e-2680Show/hide
Query:  DRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSF
        +RRLRSSAG+GKVYTSKG RAR+LRLSAPTAI+FYD+QDRLG +R TEAIDWLLQNAKSAID LSRPLETEDG+ +   F
Subjt:  DRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSF

XP_008443015.1 PREDICTED: transcription factor TCP10-like [Cucumis melo]1.5e-5977.38Show/hide
Query:  SLNDEDKKTAKLGRRDRRLRSS--AGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFP
        SL+D DKK AK+GRR+RRL SS  AGAGKVYTSKGLRARRLRLSAPTAI+FYD+QDRLGC R TEAIDWLLQNAK AIDALSRPL+TED + RKQ FS P
Subjt:  SLNDEDKKTAKLGRRDRRLRSS--AGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFP

Query:  SMAASVP-SSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE
             VP SSSSSQ QSYPL+NFSQKGNLSVF PMILN T   FSG QP CPSQSNVG GF  FP+WE
Subjt:  SMAASVP-SSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE

XP_011653401.1 transcription factor PCF8 [Cucumis sativus]1.2e-5974.42Show/hide
Query:  SLNDEDKKTAKLGRRDRRLRSS----AGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFS
        SL+D DK T K+ RR+RRL S+    AG GKVYTSKGLRARRLRLSAPTAI+FYD+QDRLGC R TEAIDWLL NAKSAIDALSRPL+TED + RKQSFS
Subjt:  SLNDEDKKTAKLGRRDRRLRSS----AGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFS

Query:  FP---SMAASVPSSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE
         P   S ++S  SSSSSQ QSYPL+NFSQKGNLSVF PMILNAT  EFSG QP CPSQSN+G GF  FP+WE
Subjt:  FP---SMAASVPSSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE

XP_023001760.1 transcription factor PCF8-like [Cucurbita maxima]6.3e-5376.16Show/hide
Query:  DRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASVP-SSSSSQLQS
        +RRLRSSAG+GKVYTSKGLRARRLRLSAPTAI+FYD+QDRLG +R TEAIDWLLQNAKSAIDALSRPLETEDG+      SFPSMA+SVP SSSSSQ  +
Subjt:  DRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASVP-SSSSSQLQS

Query:  YPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE
        YPLENF + GNLSV  PMI+N TP EFSG+QP C SQSN  +G  SFP+WE
Subjt:  YPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE

XP_038893685.1 transcription factor TCP10-like [Benincasa hispida]3.1e-6883.24Show/hide
Query:  MGSQRFSLNDEDKKTAKLGRRDRRLRSSAGA--GKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRK
        MGSQR SLNDED+KTAKLGRRDRRLRSSAGA  GKVYTS+GLRARR RLSAPTAIEFYDVQDRLG DR TE +DWLL+NAKSAIDALSRPLET D E RK
Subjt:  MGSQRFSLNDEDKKTAKLGRRDRRLRSSAGA--GKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRK

Query:  QSFSFPSMAASVPSSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE
        Q F  P     VPSSSSSQ QSYPLENFSQKGNL+VF PMILNATPEEFSG+QP  PSQSNV TGFLSFPIWE
Subjt:  QSFSFPSMAASVPSSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE

TrEMBL top hitse value%identityAlignment
A0A0A0LUP1 TCP domain-containing protein5.7e-6074.42Show/hide
Query:  SLNDEDKKTAKLGRRDRRLRSS----AGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFS
        SL+D DK T K+ RR+RRL S+    AG GKVYTSKGLRARRLRLSAPTAI+FYD+QDRLGC R TEAIDWLL NAKSAIDALSRPL+TED + RKQSFS
Subjt:  SLNDEDKKTAKLGRRDRRLRSS----AGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFS

Query:  FP---SMAASVPSSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE
         P   S ++S  SSSSSQ QSYPL+NFSQKGNLSVF PMILNAT  EFSG QP CPSQSN+G GF  FP+WE
Subjt:  FP---SMAASVPSSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE

A0A1S3B7T4 transcription factor TCP10-like7.5e-6077.38Show/hide
Query:  SLNDEDKKTAKLGRRDRRLRSS--AGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFP
        SL+D DKK AK+GRR+RRL SS  AGAGKVYTSKGLRARRLRLSAPTAI+FYD+QDRLGC R TEAIDWLLQNAK AIDALSRPL+TED + RKQ FS P
Subjt:  SLNDEDKKTAKLGRRDRRLRSS--AGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFP

Query:  SMAASVP-SSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE
             VP SSSSSQ QSYPL+NFSQKGNLSVF PMILN T   FSG QP CPSQSNVG GF  FP+WE
Subjt:  SMAASVP-SSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE

A0A5A7UTZ9 Transcription factor TCP10-like7.5e-6077.38Show/hide
Query:  SLNDEDKKTAKLGRRDRRLRSS--AGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFP
        SL+D DKK AK+GRR+RRL SS  AGAGKVYTSKGLRARRLRLSAPTAI+FYD+QDRLGC R TEAIDWLLQNAK AIDALSRPL+TED + RKQ FS P
Subjt:  SLNDEDKKTAKLGRRDRRLRSS--AGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFP

Query:  SMAASVP-SSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE
             VP SSSSSQ QSYPL+NFSQKGNLSVF PMILN T   FSG QP CPSQSNVG GF  FP+WE
Subjt:  SMAASVP-SSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE

A0A6J1KM30 transcription factor PCF8-like3.0e-5376.16Show/hide
Query:  DRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASVP-SSSSSQLQS
        +RRLRSSAG+GKVYTSKGLRARRLRLSAPTAI+FYD+QDRLG +R TEAIDWLLQNAKSAIDALSRPLETEDG+      SFPSMA+SVP SSSSSQ  +
Subjt:  DRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASVP-SSSSSQLQS

Query:  YPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE
        YPLENF + GNLSV  PMI+N TP EFSG+QP C SQSN  +G  SFP+WE
Subjt:  YPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE

D6MK40 Transcription factor (Fragment)5.6e-1543.48Show/hide
Query:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALS-----RPLETEDGESRKQSFSFP--SMAASVP
        GR+DR         KV T+KGLR RR+RLSA TAI+FYDVQDRLGCDR ++A+DWL++NAK+AID L       P  + D + ++ S   P  +  A+ P
Subjt:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALS-----RPLETEDGESRKQSFSFP--SMAASVP

Query:  SSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSG
         +SSS          S   +L +     L+ TP+ FSG
Subjt:  SSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSG

SwissProt top hitse value%identityAlignment
A2WM14 Transcription factor PCF53.9e-1359.7Show/hide
Query:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDAL
        GR+DR         KV T++G R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++NAK AID L
Subjt:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDAL

A2ZMR9 Transcription factor PCF81.7e-1344.25Show/hide
Query:  EDKKTAKLGRRDRRLRSSAGA----GKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSM
        E   TA   R  R  R++AG      KV TS+GLR RR+RLS PTAI FYD+QDRLG D+ ++AI+WL++ A +AIDAL          S   SF+ P+ 
Subjt:  EDKKTAKLGRRDRRLRSSAGA----GKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSM

Query:  AASVPSSSSSQLQ
        A+S P  ++   +
Subjt:  AASVPSSSSSQLQ

O82277 Transcription factor TCP107.8e-1461.19Show/hide
Query:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDAL
        GR+DR         KV+TSKG R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++ AK+AID L
Subjt:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDAL

Q2QM59 Transcription factor PCF82.3e-1344.95Show/hide
Query:  TAKLGRRDRRLRSSAGA----GKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASV
        TA   R  R  R++AG      KV TS+GLR RR+RLS PTAI FYD+QDRLG D+ ++AI+WL++ A +AIDAL          S   SF+ P+ A+S 
Subjt:  TAKLGRRDRRLRSSAGA----GKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASV

Query:  PSSSSSQLQ
        P  ++   +
Subjt:  PSSSSSQLQ

Q9MAH8 Transcription factor TCP33.5e-1460.87Show/hide
Query:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSR
        GR+DR         KV T+KG R RR+RLSAPTAI+FYDVQDRLG DR ++A+DWL+  AKSAID L++
Subjt:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSR

Arabidopsis top hitse value%identityAlignment
AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 32.5e-1560.87Show/hide
Query:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSR
        GR+DR         KV T+KG R RR+RLSAPTAI+FYDVQDRLG DR ++A+DWL+  AKSAID L++
Subjt:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSR

AT2G31070.1 TCP domain protein 105.5e-1561.19Show/hide
Query:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDAL
        GR+DR         KV+TSKG R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++ AK+AID L
Subjt:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDAL

AT3G15030.1 TCP family transcription factor 48.0e-1457.35Show/hide
Query:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALS
        GR+DR         KV T+KG R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++ AK++ID L+
Subjt:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALS

AT3G15030.2 TCP family transcription factor 48.0e-1457.35Show/hide
Query:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALS
        GR+DR         KV T+KG R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++ AK++ID L+
Subjt:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALS

AT3G15030.3 TCP family transcription factor 48.0e-1457.35Show/hide
Query:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALS
        GR+DR         KV T+KG R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++ AK++ID L+
Subjt:  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTCAAAGGTTTTCTCTTAATGATGAAGATAAGAAGACAGCGAAGCTCGGCCGGAGAGACCGTCGCCTCCGTTCGAGCGCCGGCGCTGGCAAGGTTTACACCTC
AAAAGGCCTCCGAGCAAGGAGGCTTCGGCTGTCGGCTCCGACCGCCATTGAATTCTACGACGTTCAGGATCGCCTTGGTTGTGACAGATCAACTGAAGCCATCGATTGGC
TTCTTCAGAATGCGAAATCCGCCATTGATGCTCTTTCTCGACCATTAGAAACAGAGGACGGCGAGAGTAGAAAACAGAGTTTCAGCTTCCCTTCTATGGCTGCTTCTGTT
CCTTCGTCTTCTTCCTCCCAGCTTCAGTCTTACCCACTTGAAAATTTCTCCCAAAAAGGCAACCTCTCTGTTTTCGGTCCAATGATTTTGAATGCCACGCCGGAGGAATT
TTCCGGCGTCCAGCCAACGTGTCCAAGTCAGAGCAATGTCGGAACTGGTTTTCTTTCCTTTCCGATCTGGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTCAAAGGTTTTCTCTTAATGATGAAGATAAGAAGACAGCGAAGCTCGGCCGGAGAGACCGTCGCCTCCGTTCGAGCGCCGGCGCTGGCAAGGTTTACACCTC
AAAAGGCCTCCGAGCAAGGAGGCTTCGGCTGTCGGCTCCGACCGCCATTGAATTCTACGACGTTCAGGATCGCCTTGGTTGTGACAGATCAACTGAAGCCATCGATTGGC
TTCTTCAGAATGCGAAATCCGCCATTGATGCTCTTTCTCGACCATTAGAAACAGAGGACGGCGAGAGTAGAAAACAGAGTTTCAGCTTCCCTTCTATGGCTGCTTCTGTT
CCTTCGTCTTCTTCCTCCCAGCTTCAGTCTTACCCACTTGAAAATTTCTCCCAAAAAGGCAACCTCTCTGTTTTCGGTCCAATGATTTTGAATGCCACGCCGGAGGAATT
TTCCGGCGTCCAGCCAACGTGTCCAAGTCAGAGCAATGTCGGAACTGGTTTTCTTTCCTTTCCGATCTGGGAATAG
Protein sequenceShow/hide protein sequence
MGSQRFSLNDEDKKTAKLGRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASV
PSSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE