; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G008090 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G008090
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDUF4228 domain-containing protein
Genome locationchr02:7524234..7524788
RNA-Seq ExpressionLsi02G008090
SyntenyLsi02G008090
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR025322 - Protein of unknown function DUF4228, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583958.1 hypothetical protein SDJN03_19890, partial [Cucurbita argyrosperma subsp. sororia]1.7e-7276Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS------AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNP
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS        D AS+LPKIVIVPPEADLQRGKIYFLMPL   PPNP
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS------AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNP

Query:  DKPR----RRKKREFSNNNNQNHSHRSTTVATAAAAVPD------NNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        DKPR     R+K+  +NNNN+N+ H   T   AA+A  D      NNNNN+ISM+NLLVSD YLSEILS+KASTHRERRRGRVGVWRPHL+SICESPSD+
Subjt:  DKPR----RRKKREFSNNNNQNHSHRSTTVATAAAAVPD------NNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

KGN65978.2 hypothetical protein Csa_019723 [Cucumis sativus]5.5e-7985.19Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS-----AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPD
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSS     AHDAAS+LPKIVIVPPEADLQRGKIYFLMPL   PP+PD
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS-----AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPD

Query:  KPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        KPRRRKKRE+SNN+     HR+TT A+ A+AVPD    N+ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
Subjt:  KPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

XP_004150211.1 uncharacterized protein LOC101205379 [Cucumis sativus]5.5e-7985.19Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS-----AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPD
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSS     AHDAAS+LPKIVIVPPEADLQRGKIYFLMPL   PP+PD
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS-----AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPD

Query:  KPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        KPRRRKKRE+SNN+     HR+TT A+ A+AVPD    N+ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
Subjt:  KPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

XP_008443296.1 PREDICTED: uncharacterized protein LOC103486913 [Cucumis melo]6.5e-8085.86Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS------AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNP
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSS      AHDAASSLPKIVIVPPEADLQRGKIYFLMPL   PP+P
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS------AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNP

Query:  DKPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPD-NNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        DKPRRRKKRE SNN+     HR+ T A+ A+AVPD   NNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
Subjt:  DKPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPD-NNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

XP_038894960.1 uncharacterized protein LOC120083324 [Benincasa hispida]2.0e-8188.83Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS----AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDK
        MKNSIRCCISCILPCG LDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS    AHDAA++ PKIVIVPPEADLQRGKIYFLMPLPPTPPNPDK
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS----AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDK

Query:  PRRRKKREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        PRRRKKR+ SNNN  +HSHR+T  A  +AAVP  NNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
Subjt:  PRRRKKREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

TrEMBL top hitse value%identityAlignment
A0A0A0M094 Uncharacterized protein2.7e-7985.19Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS-----AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPD
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSS     AHDAAS+LPKIVIVPPEADLQRGKIYFLMPL   PP+PD
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS-----AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPD

Query:  KPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        KPRRRKKRE+SNN+     HR+TT A+ A+AVPD    N+ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
Subjt:  KPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

A0A1S3B8G2 uncharacterized protein LOC1034869133.1e-8085.86Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS------AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNP
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSS      AHDAASSLPKIVIVPPEADLQRGKIYFLMPL   PP+P
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS------AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNP

Query:  DKPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPD-NNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        DKPRRRKKRE SNN+     HR+ T A+ A+AVPD   NNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
Subjt:  DKPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPD-NNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

A0A5A7UMG1 DUF4228 domain-containing protein3.1e-8085.86Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS------AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNP
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSS      AHDAASSLPKIVIVPPEADLQRGKIYFLMPL   PP+P
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS------AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNP

Query:  DKPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPD-NNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        DKPRRRKKRE SNN+     HR+ T A+ A+AVPD   NNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
Subjt:  DKPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPD-NNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

A0A6J1KLR7 rhoGEF domain-containing protein gxcI-like5.0e-7074.75Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS------AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNP
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS        D AS+LPKIVIVPPEADLQRGKIYFLMPL   PPNP
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS------AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNP

Query:  DKPR-----RRKKREFSNNNNQNHSHRSTTVATAAAAVPD-------NNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPS
        DKPR     RRKKR  +NNN  NH    T  A  A+A  D       NNNN++ISM+NL VSD YLSEILS+KASTHRERRRGRVGVWRPHL+SICESPS
Subjt:  DKPR-----RRKKREFSNNNNQNHSHRSTTVATAAAAVPD-------NNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPS

Query:  DI
         +
Subjt:  DI

A0A6P5WYR0 ELMO domain-containing protein F-like6.8e-5967.37Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTP-------PN
        MKN+IRCCISCILPCGALDVIRI+HSNG VEEISGSIKAS++MKAHPKHVLKKPSS  D    +PKIVIVPP+A+LQRGKIYFLMP+P TP        +
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTP-------PN

Query:  PDKPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSD
          K +RR   + SNNNN N   +S + A        N NNN ISMTNLL+SD YLSEILS+K ST R+RRRGRVGVWRPHL+SI E+P+D
Subjt:  PDKPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G06980.1 unknown protein8.0e-2843.24Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRR
        M NS+RCC++C+LPCGALD+IRIVH NGYVEEI+ SI A ++++A+P HVL KP S       + KI+I+ PE++L+RG IYFL+   P    P+K RRR
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRR

Query:  KKREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKAS--THRERRR----GRVGVWRPHLQSICE
        K       N QN S        A AA  +   +       + + + YL E++S  ++   HR RRR      V  WRP L SI E
Subjt:  KKREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKAS--THRERRR----GRVGVWRPHLQSICE

AT1G29195.1 unknown protein3.6e-4453.97Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSA---HDAAS--SLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPD
        MK +IRCCI+CILPCGALDVIRIVHSNG+VEEISG+I AS++MKAHPKHVLKKPSS    HD     S  KIVIVPPEA+LQRGKIYFLMP   +     
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSA---HDAAS--SLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPD

Query:  KPRRRKKREFSN-----NNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICE
          + R+++  +N      +     HR            ++  + N     L+ SD YL+EILS+K +T ++RR+GRVGVWRPHL+SI E
Subjt:  KPRRRKKREFSN-----NNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICE

AT2G30230.1 unknown protein8.9e-2738.83Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRR
        M NS+RCC++C+LPCGALD+IRIVH NG+V+EI+  + A ++++A+P HVL KP S       + KI+I+ PE++L+RG IYFL+P   + P   K ++R
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRR

Query:  K-----KREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRR----GRVGVWRPHLQSICE
        K     K+   + N+ N  H ST           + + + +++    + D  LSE +S     +R RR+      V  WRPHL SI E
Subjt:  K-----KREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRR----GRVGVWRPHLQSICE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAATAGCATAAGATGCTGCATATCTTGCATTCTTCCCTGTGGAGCTTTGGATGTGATTCGCATAGTACACTCCAATGGCTACGTCGAAGAAATCAGCGGTTCCAT
CAAAGCTTCCGACGTCATGAAAGCCCATCCCAAACACGTCCTCAAAAAGCCTTCCTCCGCCCACGACGCCGCCTCCTCCCTCCCCAAGATCGTCATCGTCCCACCGGAAG
CCGACCTCCAACGCGGTAAGATTTATTTCCTCATGCCACTCCCTCCTACTCCTCCCAATCCCGACAAACCCCGCCGTAGAAAGAAGAGAGAATTTTCCAATAACAATAAT
CAAAATCATTCCCACCGATCAACCACCGTCGCTACCGCCGCCGCCGCCGTACCCGACAACAACAACAACAACAACATTTCCATGACTAATCTCCTCGTTTCCGACCACTA
CCTCTCCGAAATACTCTCCGACAAAGCCTCCACACACCGCGAACGGCGGCGCGGCCGTGTCGGCGTTTGGAGACCCCACTTACAAAGCATTTGTGAATCCCCCAGTGATA
TCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAATAGCATAAGATGCTGCATATCTTGCATTCTTCCCTGTGGAGCTTTGGATGTGATTCGCATAGTACACTCCAATGGCTACGTCGAAGAAATCAGCGGTTCCAT
CAAAGCTTCCGACGTCATGAAAGCCCATCCCAAACACGTCCTCAAAAAGCCTTCCTCCGCCCACGACGCCGCCTCCTCCCTCCCCAAGATCGTCATCGTCCCACCGGAAG
CCGACCTCCAACGCGGTAAGATTTATTTCCTCATGCCACTCCCTCCTACTCCTCCCAATCCCGACAAACCCCGCCGTAGAAAGAAGAGAGAATTTTCCAATAACAATAAT
CAAAATCATTCCCACCGATCAACCACCGTCGCTACCGCCGCCGCCGCCGTACCCGACAACAACAACAACAACAACATTTCCATGACTAATCTCCTCGTTTCCGACCACTA
CCTCTCCGAAATACTCTCCGACAAAGCCTCCACACACCGCGAACGGCGGCGCGGCCGTGTCGGCGTTTGGAGACCCCACTTACAAAGCATTTGTGAATCCCCCAGTGATA
TCTAA
Protein sequenceShow/hide protein sequence
MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRRKKREFSNNNN
QNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI