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Lsi02G008380 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G008380
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING/FYVE/PHD-type zinc finger family protein isoform 1
Genome locationchr02:7848905..7849213
RNA-Seq ExpressionLsi02G008380
SyntenyLsi02G008380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044701.1 hypothetical protein E6C27_scaffold46G004570 [Cucumis melo var. makuwa]7.1e-2886.49Show/hide
Query:  LSPDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD
        LSPDRKFNSPSS R+L +LQRRRDQQISNC +KVSA  CSQ  KCRWCRSDVIDDTCFTRAEALRLPQQVFSCD
Subjt:  LSPDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD

KAG6573331.1 hypothetical protein SDJN03_27218, partial [Cucurbita argyrosperma subsp. sororia]7.1e-3675.96Show/hide
Query:  MERSSHLPSPLSIFLLSFLF--FLCLSCNALSPDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQV
        M RS HL +PLSIFL+SFLF  F+C+S NALS  RKFN PSSDR LLSLQRRRD++I NC +KVSAL CS+ P CRWCRSD IDDTCF+RAEALRLPQQV
Subjt:  MERSSHLPSPLSIFLLSFLF--FLCLSCNALSPDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQV

Query:  FSCD
        FSCD
Subjt:  FSCD

KAG7963716.1 hypothetical protein I3843_09G132300 [Carya illinoinensis]1.0e-1356.18Show/hide
Query:  LLSFLFFLCLSCNALS-PDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD
        LL F+FFL  + +  S P    +S S  RSLL   R    QI +C+  VS   CSQ PKCRWCRS+ IDDTCFTR EALRLP+QVFSC+
Subjt:  LLSFLFFLCLSCNALS-PDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD

KDP21149.1 hypothetical protein JCGZ_21620 [Jatropha curcas]2.6e-1450.55Show/hide
Query:  SIFLLSFLFFLCLSCNALSPDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD
        SIFL+     L  S +  S  +  +  +S RSLL+ QR   QQI NCS  V+   CSQ PKCRWC+S+ +DD CF++ EA RLPQQVF CD
Subjt:  SIFLLSFLFFLCLSCNALSPDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD

XP_038723734.1 uncharacterized protein LOC120015395 [Tripterygium wilfordii]4.5e-1446.23Show/hide
Query:  MERSSHLPSPLSIFLLSFLF-FLCLSCNALSPDRKFNSPSSDRSLLSLQRR---RDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQ
        M+ S  L   L + LL F F +   S + ++     +S +S RS+L+ QRR     +QI +C   VS  HCSQ P+CRWCRSD +DD CF++ EA RLPQ
Subjt:  MERSSHLPSPLSIFLLSFLF-FLCLSCNALSPDRKFNSPSSDRSLLSLQRR---RDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQ

Query:  QVFSCD
        QVF+CD
Subjt:  QVFSCD

TrEMBL top hitse value%identityAlignment
A0A067JNS3 Uncharacterized protein1.3e-1450.55Show/hide
Query:  SIFLLSFLFFLCLSCNALSPDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD
        SIFL+     L  S +  S  +  +  +S RSLL+ QR   QQI NCS  V+   CSQ PKCRWC+S+ +DD CF++ EA RLPQQVF CD
Subjt:  SIFLLSFLFFLCLSCNALSPDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD

A0A0A0LX55 Uncharacterized protein2.5e-4287Show/hide
Query:  RSSHLPSPLSIFLLSFLFFLCLSCNALSPDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD
        RSSHL SPLSIFL+SFLFF  +SCNALSPDRKFNSPSS R+L SLQRRRDQQISNC +KVSAL CSQ PKCRWCRSD+IDDTCFTRAEALRLPQQVFSCD
Subjt:  RSSHLPSPLSIFLLSFLFFLCLSCNALSPDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD

A0A1R3H5C1 Uncharacterized protein3.1e-1350.56Show/hide
Query:  LLSFLFFLCLSCNALS-PDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD
        L   LF L  + + LS  D +    S  RSLL+LQR    QI NC + +S   C Q PKCRWCRS+ +DD CF ++EA RLPQQVF CD
Subjt:  LLSFLFFLCLSCNALS-PDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD

A0A218WT29 Uncharacterized protein4.1e-1350Show/hide
Query:  LSIFLLSFLFFLCLSCNALSPDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD
        L++ LL    F  L+  A  P    +S SS RSL + QRR   QI NCS+  S+  C+Q P+CRWCRS+ +DDTCF+ AEA RLP QVF+C+
Subjt:  LSIFLLSFLFFLCLSCNALSPDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD

A0A5A7TT10 Uncharacterized protein3.4e-2886.49Show/hide
Query:  LSPDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD
        LSPDRKFNSPSS R+L +LQRRRDQQISNC +KVSA  CSQ  KCRWCRSDVIDDTCFTRAEALRLPQQVFSCD
Subjt:  LSPDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGGAGCTCCCATCTTCCATCGCCGCTCTCCATTTTCCTCCTCTCTTTCCTCTTCTTCCTCTGCTTATCATGTAATGCCTTGTCCCCAGATCGCAAATTCAACTC
TCCCAGTTCGGATCGTTCTTTATTGAGCTTACAGAGAAGGAGAGATCAACAGATCTCTAATTGCAGCGACAAGGTTTCGGCTTTACACTGTTCCCAGATCCCCAAATGCC
GGTGGTGCCGGAGCGATGTCATTGACGATACCTGCTTCACCAGAGCCGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCCTGTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGGAGCTCCCATCTTCCATCGCCGCTCTCCATTTTCCTCCTCTCTTTCCTCTTCTTCCTCTGCTTATCATGTAATGCCTTGTCCCCAGATCGCAAATTCAACTC
TCCCAGTTCGGATCGTTCTTTATTGAGCTTACAGAGAAGGAGAGATCAACAGATCTCTAATTGCAGCGACAAGGTTTCGGCTTTACACTGTTCCCAGATCCCCAAATGCC
GGTGGTGCCGGAGCGATGTCATTGACGATACCTGCTTCACCAGAGCCGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCCTGTGATTGA
Protein sequenceShow/hide protein sequence
MERSSHLPSPLSIFLLSFLFFLCLSCNALSPDRKFNSPSSDRSLLSLQRRRDQQISNCSDKVSALHCSQIPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD