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Lsi02G008630 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G008630
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCoatomer subunit zeta
Genome locationchr02:8094935..8105799
RNA-Seq ExpressionLsi02G008630
SyntenyLsi02G008630
Gene Ontology termsGO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process)
GO:0015031 - protein transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0030126 - COPI vesicle coat (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR62868.1 hypothetical protein CICLE_v10016911mg [Citrus clementina]1.7e-0589.66Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGGY
        +RGNV+KKEALENLDLILLCLDEI+DGGY
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGGY
GAY35063.1 hypothetical protein CUMW_014070 [Citrus unshiu]9.9e-0679.41Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGGYLSYAL
        +RGNV+KKEALENLDLILLCLDEI+DGGY +  L
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGGYLSYAL
XP_020246127.1 coatomer subunit zeta-1-like isoform X2 [Asparagus officinalis]5.8e-0655.36Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGGYLSYALSGLGFRHYSRDGCKCHCREGRK
        +R NV+K+ ALENLDLILLC+DEI+DGG        LG +  S +  KCHC EG K
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGGYLSYALSGLGFRHYSRDGCKCHCREGRK
XP_023542943.1 coatomer subunit zeta-1-like isoform X2 [Cucurbita pepo subsp. pepo]2.9e-0590Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGGYL
        +RGNVEKKEALENLDLILLCLDEIIDGG +
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGGYL
XP_038895636.1 coatomer subunit zeta-1-like isoform X2 [Benincasa hispida]2.9e-0590Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGGYL
        +RGNVEKKEALENLDLILLCLDEIIDGG +
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGGYL
TrEMBL top hitse value%identityAlignment
A0A067GRM8 Coatomer subunit zeta8.1e-0689.66Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGGY
        +RGNV+KKEALENLDLILLCLDEI+DGGY
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGGY
A0A2H5N486 Coatomer subunit zeta4.8e-0679.41Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGGYLSYAL
        +RGNV+KKEALENLDLILLCLDEI+DGGY +  L
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGGYLSYAL
I1L0A4 Coatomer subunit zeta1.4e-0586.21Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGGY
        +RGNV+KKEALENLDLILLC+DEI+DGGY
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGGY
I1MFY8 Coatomer subunit zeta1.4e-0586.21Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGGY
        +RGNV+KKEALENLDLILLC+DEI+DGGY
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGGY
V4TQQ9 Coatomer subunit zeta8.1e-0689.66Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGGY
        +RGNV+KKEALENLDLILLCLDEI+DGGY
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGGY
SwissProt top hitse value%identityAlignment
Q6Z844 Coatomer subunit zeta-23.5e-0673.33Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGGYL
        +RG+VEK+ ALENLDLILLC+DEI+DGG +
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGGYL
Q84LG4 Coatomer subunit zeta-28.7e-0575Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGG
        +R NVEK EALENLDLI LCLDE++D G
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGG
Q8H1F4 Coatomer subunit zeta-38.7e-0575Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGG
        +R NVEK EALENLDLI LCLDE++D G
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGG
Q940S5 Coatomer subunit zeta-13.3e-0471.43Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGG
        +R NV+K+EAL+NLDLI L  DEIIDGG
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGG
Q9MAX5 Coatomer subunit zeta-17.8e-0678.57Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGG
        +R NV+K+ ALENLDLILLCLDEI+DGG
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGG
Arabidopsis top hitse value%identityAlignment
AT1G60970.1 SNARE-like superfamily protein2.3e-0571.43Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGG
        +R NV+K+EAL+NLDLI L  DEIIDGG
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGG
AT3G09800.1 SNARE-like superfamily protein6.2e-0675Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGG
        +R NVEK EALENLDLI LCLDE++D G
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGG
AT4G08520.1 SNARE-like superfamily protein6.2e-0675Show/hide
Query:  MRGNVEKKEALENLDLILLCLDEIIDGG
        +R NVEK EALENLDLI LCLDE++D G
Subjt:  MRGNVEKKEALENLDLILLCLDEIIDGG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGTAATGTAGAAAAGAAGGAGGCACTTGAGAACTTGGACCTCATTTTACTGTGTCTTGATGAAATTATCGACGGAGGGTATCTCTCATATGCTCTTTCTGGTTT
AGGGTTTAGGCATTATTCTCGAGACGGATGCAAATGTCATTGCAGGGAAGGTCGCAAGTCACAATATTGA
mRNA sequenceShow/hide mRNA sequence
CCGATCCCAATCTCGTTCGCCAAATACACAATCCGACGGTGGAACAACATTCTATCAAAATTAATATCGTAGAACGCGCCGCAGGAGATCATAGATCTCTCTGTAGTGGC
ATTGCGAGATTTTCATTTGTCTGTGAAGCCATGGCAGTGAGAAGCTCCATAGAGTGGAAGATCAGTGTGTGAAAAAAGCAGAGAGAAACGAAAAATTCTGTGTTATGGGT
TTCACAATGGGCTTGAATTTGCTTCTTCTTGTTGCCATGGTGGCCACCAATATTCTCTCTCTTTACCATCTCTCCTCTACGCTTCAATCCACAAAATCCCCTGTTTCACA
GCCGGTTCCAGATCACTTAATCCGGCAACTTCAGACCATACGCGCCACCATAAACCACCTCACGCGCCTCCACCCGACGGCGGCGGCTTCTACATCGAAAACTAAACTCT
CTATCCCTTCAGATCTCGTTCTGTATTCTCAATTTTCGCCAATTGCTTCATCTTGTCACAGTAACCCTGAGCTTCTTCATAGGTTTATGAATTACACTCCGTTTTCGAGT
TGCCCTTCTGATTCTGATGTCGCTGAGGCTTTAATTCTTCGTGGGTGTCATCCACTTCCTCGTCGGCGGTGCTTTGCCAAAACCCCACAAAAACCTTCTTCTTCTTTGCC
TCAAAATCCCTTTGCTTCTTCACTTCCGGAGTCTAATATTATTTGGGGGAAATATTCTTGTAAGGGTTTTGGCTGTTTGAATCGATTGAATCCGAATCTGGGGTTCGATC
CTTCTCATGAAATCACCAAGTTTATGACCTTCAAGACGGAATTAGACCTTCCAATCCCTCAATTACTGCAGATTGCGAAAGCGGCTAACTCTGTTCTTCGTCTTGGACTT
GACATTGGCGGTGGAACCGCCACTTTTGCTGCTAGAATGAAGCTCTACAATGTTACTATGGTCACTACGACTATGAACCTTGGCGCGCCGTACAATGAAGTCGCGGCGCT
AAGGGGATTGGTGCCTTTGCACGTACCACTGCAGCAACGATTGCCCATTTTTGATGGAGTGATGGATCTGGTTCGGTGTGGCCATGCTGTGAACCGGTGGATTCCTGTGA
AATCGATGGAGTTTTTATTTTATGATGTGGATAGAGTGTTGAGAGTTGGGGGTTACCTTTGGTTTGATCATTTCTTCAGCAAAGGGATGGATCTTGATAAAGTTTACTCT
CCTTTGATCACCAAATTGGGTTACCGGAAGGTCAAGTGGGCAACGGCGAATAAGACCGACTTGGGCGGGTTGAAGAATGGAGAGGTTTACTTGACGGCATTGCTGCAAAA
GCCAGTGCCAACATGAGGGGTAATGTAGAAAAGAAGGAGGCACTTGAGAACTTGGACCTCATTTTACTGTGTCTTGATGAAATTATCGACGGAGGGTATCTCTCATATGC
TCTTTCTGGTTTAGGGTTTAGGCATTATTCTCGAGACGGATGCAAATGTCATTGCAGGGAAGGTCGCAAGTCACAATATTGACAGTGGTGCTCCTTTGTCTGAGCAGACA
ATAAGTCAAGCATTGGCCACAGCTCGCGAACATCTAGCAAGATCTCTTCTCAAGTAATATGTTTTCCTGATAAAAGTGAGTGGCAAGGACAATCCCCCACACCAAAAAAG
GAAAAAAAAAGGTTCAGGTTGAGTTGGCCTGTTGTTTTGGTAAAAAATGATTAATGGTTGAGTTATCAATGGCCTCATGTTTGTATATTTAGCTCATACTCTGCTGCTTG
CCTTTTGGTAAACCTGATTTTGGATTTGAGCAGATGTGGTACATTGCGGGACTGGCGTTAAATGTTATTATATGTGGTGTTACCAGTTTTTTTTGAAACAATGTTTTCCT
TTTTTGGCCTTTTAATTTTGTGGTCATTAGCCCAATGAGGGCGACCCAAGCAGGTTTTCAAATGTGGCGTTGCCTGATTTGTTGCCTGATTTCTTGAATAGAACTCGGGA
TTTTTGCTAGAATGGCTTTTGGATCAACATAGCTTGAGTTAGGATGCAATTAACACTACATCAGTTGTAACATTGGTATAATAGTAAACCTCATTCCTTA
Protein sequenceShow/hide protein sequence
MRGNVEKKEALENLDLILLCLDEIIDGGYLSYALSGLGFRHYSRDGCKCHCREGRKSQY