CuGenDBv2

Gene ID	Lsi02G008660
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	40S ribosomal protein S14
Genome location	chr02:8122687..8124127
RNA-Seq Expression	Lsi02G008660
Synteny	Lsi02G008660
Gene Ontology terms	GO:0000028 - ribosomal small subunit assembly (biological process) GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005975 - carbohydrate metabolic process (biological process) GO:0006412 - translation (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function) GO:0048027 - mRNA 5'-UTR binding (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR001971 - Ribosomal protein S11 IPR036967 - Ribosomal protein S11 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6573353.1 hypothetical protein SDJN03_27240, partial [Cucurbita argyrosperma subsp. sororia]

3.8e-23

98.31

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Query:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        MSGSRRKTREPKEETVTLGP+VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
Subjt:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

KAG6583920.1 hypothetical protein SDJN03_19852, partial [Cucurbita argyrosperma subsp. sororia]

3.8e-23

98.31

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Query:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        MSGSRRKTREPKEETVTLGP+VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
Subjt:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

KAG7012516.1 40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.8e-23

98.31

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Query:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        MSGSRRKTREPKEETVTLGP+VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
Subjt:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

XP_004147409.1 40S ribosomal protein S14-2 [Cucumis sativus]

3.8e-23

98.31

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Query:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        MSGSRRKTREPKEETVTLGP+VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
Subjt:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

XP_038893713.1 40S ribosomal protein S14-2-like [Benincasa hispida]

1.7e-23

100

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Query:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
Subjt:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B9H6 40S ribosomal protein S14-2-like

1.8e-23

98.31

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Query:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        MSGSRRKTREPKEETVTLGP+VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
Subjt:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

A0A3B6PIY7 Uncharacterized protein

5.9e-22

91.53

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Query:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        M GS+RKTREPKEE VTLGP+VREGEHVFGVAH+FASFNDTFIHVTDLSGRETLVRITG
Subjt:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

A0A5A7UR49 40S ribosomal protein S14-2-like

5.4e-23

96.61

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Query:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        +SGSRRKTREPKEETVTLGP+VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
Subjt:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

A0A6J1GTR2 40S ribosomal protein S14-2-like

1.8e-23

98.31

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Query:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        MSGSRRKTREPKEETVTLGP+VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
Subjt:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

A0A6J1KQN4 40S ribosomal protein S14-2-like

1.8e-23

98.31

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Query:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        MSGSRRKTREPKEETVTLGP+VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
Subjt:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

SwissProt top hits

e value

%identity

Alignment

P19950 40S ribosomal protein S14

1.1e-20

92.86

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Query:  SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        SRRKTREPKEE V LGP+VREGE VFGVAHIFASFNDTFIHVTDLSGRETLVRITG
Subjt:  SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

P19951 40S ribosomal protein S14

2.8e-21

91.53

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Query:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        MSG R+KTREPKEE V LGP+VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
Subjt:  MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

P42036 40S ribosomal protein S14-3

1.1e-20

85.71

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Query:  SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        S+RKT+EPK E VTLGP+VREGE VFGV H+FASFNDTFIHVTDLSGRETLVRITG
Subjt:  SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

Q9CAX6 40S ribosomal protein S14-2

9.8e-22

91.07

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Query:  SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        S+RKT+EPK ETVTLGPSVREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITG
Subjt:  SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

Q9SIH0 40S ribosomal protein S14-1

8.3e-21

87.5

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Query:  SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        S+RKT+EPK + VTLGPSVREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITG
Subjt:  SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

Arabidopsis top hits

e value

%identity

Alignment

AT2G36160.1 Ribosomal protein S11 family protein

5.9e-22

87.5

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Query:  SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        S+RKT+EPK + VTLGPSVREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITG
Subjt:  SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

AT3G11510.1 Ribosomal protein S11 family protein

6.9e-23

91.07

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Query:  SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        S+RKT+EPK ETVTLGPSVREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITG
Subjt:  SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

AT3G52580.1 Ribosomal protein S11 family protein

7.7e-22

85.71

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Query:  SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
        S+RKT+EPK E VTLGP+VREGE VFGV H+FASFNDTFIHVTDLSGRETLVRITG
Subjt:  SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG

Sequences

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CDS sequence

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ATGTCTGGCTCAAGGAGGAAGACCAGGGAACCCAAGGAAGAAACTGTGACTCTTGGTCCTTCAGTGAGGGAAGGCGAGCATGTGTTTGGCGTGGCTCACATTTTTGCCTC
ATTTAACGATACATTTATTCATGTGACTGATCTTTCTGGGAGGGAAACCCTTGTCCGCATTACAGGTGAAACAATTGAATATGTTTCTGCCTTTTTTATTATACTCAAAA
TTGTAATGCTTGTAAATATAAATCCGGGATGGCTTCTTCTCCATTTCTTAGTTTTTGATCCTACCACTATATTGTTTATAATTGCCTGTGAATTCACTATGCTCACTTCA
GAGCTCTCTAATGGAGTGGAAGTTGTAGATTGGAGAAGTGGCCCTTTATAG

mRNA sequence

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ATAAACGGCAGGGTATTTCGGTAAATCAGCTCACAGCTAAAGGCCCATCAGGAAAAACCCTAATTCTCCCTCCATATAAAATTTGGCCGACAGCCATTTACCCTTCTCCT
CGCACGAAGGATTTCTGCAGGCGGCAAAATCTCGCTAGAGCTCCACAAAGCGGAAGCTACTTCGCCCATCTTTTCGTAAACATGTCTGGCTCAAGGAGGAAGACCAGGGA
ACCCAAGGAAGAAACTGTGACTCTTGGTCCTTCAGTGAGGGAAGGCGAGCATGTGTTTGGCGTGGCTCACATTTTTGCCTCATTTAACGATACATTTATTCATGTGACTG
ATCTTTCTGGGAGGGAAACCCTTGTCCGCATTACAGGTGAAACAATTGAATATGTTTCTGCCTTTTTTATTATACTCAAAATTGTAATGCTTGTAAATATAAATCCGGGA
TGGCTTCTTCTCCATTTCTTAGTTTTTGATCCTACCACTATATTGTTTATAATTGCCTGTGAATTCACTATGCTCACTTCAGAGCTCTCTAATGGAGTGGAAGTTGTAGA
TTGGAGAAGTGGCCCTTTATAG

Protein sequence

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MSGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGETIEYVSAFFIILKIVMLVNINPGWLLLHFLVFDPTTILFIIACEFTMLTS
ELSNGVEVVDWRSGPL

Lsi02G008660 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome