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Lsi02G008940 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G008940
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein TIFY 5A-like
Genome locationchr02:8512136..8512764
RNA-Seq ExpressionLsi02G008940
SyntenyLsi02G008940
Gene Ontology termsGO:0009611 - response to wounding (biological process)
GO:0031347 - regulation of defense response (biological process)
GO:2000022 - regulation of jasmonic acid mediated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR018467 - CO/COL/TOC1, conserved site
IPR040390 - TIFY/JAZ family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583895.1 Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia]1.1e-2567.86Show/hide
Query:  ILNCNLELCLSPPSSSPTTTT------------NITRTGVPVLDLTELQAKAIIVRATKQMEAERRSTT------AEQVSMKNGANPSMRRSLQRFLQKR
        ILNCNLELCLSPPSSSP+T T            +I  T VP+ D TELQA+AIIVRAT QMEAERR TT       ++VSMK+GANPSMRRSLQRFLQKR
Subjt:  ILNCNLELCLSPPSSSPTTTT------------NITRTGVPVLDLTELQAKAIIVRATKQMEAERRSTT------AEQVSMKNGANPSMRRSLQRFLQKR

Query:  KHRTQTLSPYTH
        KHR QTLSPY+H
Subjt:  KHRTQTLSPYTH

XP_022927150.1 protein TIFY 5A-like [Cucurbita moschata]2.4e-2568.18Show/hide
Query:  ILNCNLELCLSPPSSSPTTTT----------NITRTGVPVLDLTELQAKAIIVRATKQMEAERRSTT------AEQVSMKNGANPSMRRSLQRFLQKRKH
        ILNCNLELCLSPPSSSP+T T          +I  T VP+ D TELQA+AIIVRAT QMEAERR TT       ++VSMK+GA+PSMRRSLQRFLQKRKH
Subjt:  ILNCNLELCLSPPSSSPTTTT----------NITRTGVPVLDLTELQAKAIIVRATKQMEAERRSTT------AEQVSMKNGANPSMRRSLQRFLQKRKH

Query:  RTQTLSPYTH
        R QTLSPY+H
Subjt:  RTQTLSPYTH

XP_023001493.1 protein TIFY 5A-like [Cucurbita maxima]1.4e-2566.96Show/hide
Query:  ILNCNLELCLSPPSSSPTTTTNITR------------TGVPVLDLTELQAKAIIVRATKQMEAERRSTT------AEQVSMKNGANPSMRRSLQRFLQKR
        ILNCNLELCLSPPSSSP+TT  +              T VP+LDLTELQA+AIIVRA  QMEAERR TT       E +SMK+GA+PSMRRSLQRFLQKR
Subjt:  ILNCNLELCLSPPSSSPTTTTNITR------------TGVPVLDLTELQAKAIIVRATKQMEAERRSTT------AEQVSMKNGANPSMRRSLQRFLQKR

Query:  KHRTQTLSPYTH
        KHR QTLSPY+H
Subjt:  KHRTQTLSPYTH

XP_023520316.1 protein TIFY 5A-like [Cucurbita pepo subsp. pepo]1.9e-2566.96Show/hide
Query:  ILNCNLELCLSPPSSSPTTTT------------NITRTGVPVLDLTELQAKAIIVRATKQMEAERRSTTA------EQVSMKNGANPSMRRSLQRFLQKR
        ILNCNLELCLSPPSSSP+T T            +I  T VP+ DLTELQA+AIIVRAT QME ERR TT       ++VSMK+GA+PSMRRSLQRFLQKR
Subjt:  ILNCNLELCLSPPSSSPTTTT------------NITRTGVPVLDLTELQAKAIIVRATKQMEAERRSTTA------EQVSMKNGANPSMRRSLQRFLQKR

Query:  KHRTQTLSPYTH
        KHR QTLSPY+H
Subjt:  KHRTQTLSPYTH

XP_038895134.1 protein TIFY 5A-like [Benincasa hispida]1.4e-2871.68Show/hide
Query:  LNCNLELCLSPPSSSPT----TTTNITRTG---------VPVLDLTELQAKAIIVRATKQMEAERRST-------TAEQVSMKNGANPSMRRSLQRFLQK
        LNCNLELCLSPPSSSP+    T TN T T          VP+LDLTELQA+AIIVRAT+QMEAERRST       T EQ+SMK+GA+PSMRRSLQRFLQK
Subjt:  LNCNLELCLSPPSSSPT----TTTNITRTG---------VPVLDLTELQAKAIIVRATKQMEAERRST-------TAEQVSMKNGANPSMRRSLQRFLQK

Query:  RKHRTQTLSPYTH
        RKHRTQTLSPYTH
Subjt:  RKHRTQTLSPYTH

TrEMBL top hitse value%identityAlignment
A0A0A0LX13 Uncharacterized protein3.7e-1960.53Show/hide
Query:  NCNLELCLSPPSSSPTTTT--------------NITRTGVPVLDLTELQAKAIIVRATKQMEAERR-------STTAEQVSMKNG-ANPSMRRSLQRFLQ
        N NLELCLSPPSSSP+TTT              +IT  G+   DLTE+QAKAIIV+AT+QMEAER        S++AE+V M NG A+PS+RRSLQRFLQ
Subjt:  NCNLELCLSPPSSSPTTTT--------------NITRTGVPVLDLTELQAKAIIVRATKQMEAERR-------STTAEQVSMKNG-ANPSMRRSLQRFLQ

Query:  KRKHRTQTLSPYTH
        KRK R QTLSPY H
Subjt:  KRKHRTQTLSPYTH

A0A1S3BA64 protein TIFY 5A-like2.1e-2263.64Show/hide
Query:  MEHLILNCNLELCLSPPSSSPTTTT----------------NITRTGVPVLDLTELQAKAIIVRATKQMEAERRSTT------AEQVSMKNG-ANPSMRR
        MEH   N NLELCLSPPSSSP+TTT                +IT  GVP  DLTE+QAKAIIV AT+QMEAERR TT      AE+V M++G A+PSMRR
Subjt:  MEHLILNCNLELCLSPPSSSPTTTT----------------NITRTGVPVLDLTELQAKAIIVRATKQMEAERRSTT------AEQVSMKNG-ANPSMRR

Query:  SLQRFLQKRKHRTQTLSPYTH
        SLQRFLQKRK R QTLSPYTH
Subjt:  SLQRFLQKRKHRTQTLSPYTH

A0A6J1CG02 protein TIFY 5A-like4.6e-1452.78Show/hide
Query:  LNCNLELCLSPPSSSPTTTTNITRT----------------GVPVLDLTELQAKAIIVRATKQMEAERRSTTAEQVSMKNGANPSMRRSLQRFLQKRKHR
        L+CNLELCLSPP + P++ T    T                G PV DLTELQA+AII+ AT+QM  E R TT    S +  ++ SM+RSLQRFLQKRKHR
Subjt:  LNCNLELCLSPPSSSPTTTTNITRT----------------GVPVLDLTELQAKAIIVRATKQMEAERRSTTAEQVSMKNGANPSMRRSLQRFLQKRKHR

Query:  TQTLSPYT
         QTL+PYT
Subjt:  TQTLSPYT

A0A6J1EN30 protein TIFY 5A-like1.2e-2568.18Show/hide
Query:  ILNCNLELCLSPPSSSPTTTT----------NITRTGVPVLDLTELQAKAIIVRATKQMEAERRSTT------AEQVSMKNGANPSMRRSLQRFLQKRKH
        ILNCNLELCLSPPSSSP+T T          +I  T VP+ D TELQA+AIIVRAT QMEAERR TT       ++VSMK+GA+PSMRRSLQRFLQKRKH
Subjt:  ILNCNLELCLSPPSSSPTTTT----------NITRTGVPVLDLTELQAKAIIVRATKQMEAERRSTT------AEQVSMKNGANPSMRRSLQRFLQKRKH

Query:  RTQTLSPYTH
        R QTLSPY+H
Subjt:  RTQTLSPYTH

A0A6J1KQP6 protein TIFY 5A-like6.9e-2666.96Show/hide
Query:  ILNCNLELCLSPPSSSPTTTTNITR------------TGVPVLDLTELQAKAIIVRATKQMEAERRSTT------AEQVSMKNGANPSMRRSLQRFLQKR
        ILNCNLELCLSPPSSSP+TT  +              T VP+LDLTELQA+AIIVRA  QMEAERR TT       E +SMK+GA+PSMRRSLQRFLQKR
Subjt:  ILNCNLELCLSPPSSSPTTTTNITR------------TGVPVLDLTELQAKAIIVRATKQMEAERRSTT------AEQVSMKNGANPSMRRSLQRFLQKR

Query:  KHRTQTLSPYTH
        KHR QTLSPY+H
Subjt:  KHRTQTLSPYTH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACACTTGATCCTCAACTGCAACTTGGAACTTTGTCTTTCTCCACCTTCTTCCTCTCCCACCACCACGACCAATATCACTCGTACCGGAGTCCCTGTACTCGATCT
TACCGAGCTCCAGGCGAAGGCAATAATAGTACGAGCCACGAAACAAATGGAGGCGGAGAGAAGATCGACGACGGCAGAACAAGTATCGATGAAGAATGGAGCTAACCCTT
CCATGAGGAGATCATTGCAGAGGTTTTTACAAAAGAGAAAGCATCGAACTCAAACACTTTCACCTTACACTCACTAA
mRNA sequenceShow/hide mRNA sequence
ATTCAATTCAATTTCTTCTTCTTCTTCTTCATCATCATCACCAATGGAACACTTGATCCTCAACTGCAACTTGGAACTTTGTCTTTCTCCACCTTCTTCCTCTCCCACCA
CCACGACCAATATCACTCGTACCGGAGTCCCTGTACTCGATCTTACCGAGCTCCAGGCGAAGGCAATAATAGTACGAGCCACGAAACAAATGGAGGCGGAGAGAAGATCG
ACGACGGCAGAACAAGTATCGATGAAGAATGGAGCTAACCCTTCCATGAGGAGATCATTGCAGAGGTTTTTACAAAAGAGAAAGCATCGAACTCAAACACTTTCACCTTA
CACTCACTAACTTTATTTAGTTAGGAGCTGCGTTTGTAATTAAAATAGCTTAGCTTAGCTACATTAATTCACTCAATAATCCCACTTATGGATTAAATTTTACCTCAAAT
GATGGGGGCCCAATAATGTAGCTAGCTCTTGTATTTGAATGGTTTAAATTCATAGATTTTAGATATAAAAACTCCAATTTTCAATTTCC
Protein sequenceShow/hide protein sequence
MEHLILNCNLELCLSPPSSSPTTTTNITRTGVPVLDLTELQAKAIIVRATKQMEAERRSTTAEQVSMKNGANPSMRRSLQRFLQKRKHRTQTLSPYTH