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Lsi02G009030 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G009030
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSm domain-containing protein
Genome locationchr02:8640557..8640895
RNA-Seq ExpressionLsi02G009030
SyntenyLsi02G009030
Gene Ontology termsGO:0031417 - NatC complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034110 - LSM domain containing 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008444477.1 PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo]1.7e-5193.75Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSN ESN ESLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQD VEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_011649337.1 uncharacterized protein LOC101206200 [Cucumis sativus]2.4e-5395.54Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSNVESNPESLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQD VEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_022927243.1 uncharacterized protein LOC111434149 [Cucurbita moschata]2.0e-5295.54Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ G NVESNP+SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYC+DKQGNIILQD VEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_023520042.1 uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]5.4e-5396.43Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ GSNVESNP+SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYC+DKQGNIILQD VEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_038893823.1 uncharacterized protein LOC120082644 [Benincasa hispida]5.9e-5293.75Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES GSMVQDGSNVESNPESLDRVGKVR+LLFRRMLIGIKDGRFFLGSFYC+DKQGNIILQD VEYRSTR SSPSPMEQRCLGLILIPNSCRVSCH+D
Subjt:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDE+LALLSV
Subjt:  STIDEQLALLSV

TrEMBL top hitse value%identityAlignment
A0A0A0LSZ5 Sm domain-containing protein1.2e-5395.54Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSNVESNPESLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQD VEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A1S3BAH4 uncharacterized protein LOC1034877848.4e-5293.75Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSN ESN ESLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQD VEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A5D3DAS2 Small nuclear ribonucleoprotein family protein isoform 28.4e-5293.75Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSN ESN ESLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQD VEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1EKG3 uncharacterized protein LOC1114341499.9e-5395.54Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ G NVESNP+SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYC+DKQGNIILQD VEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1KMW6 uncharacterized protein LOC1114956148.4e-5293.75Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        M+QESGGSMVQ GSNVESNP+SLDRVGKVRKLLFRRML+GIKDGRFFLGSFYC+DKQGNIILQD VEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

SwissProt top hitse value%identityAlignment
P63162 Small nuclear ribonucleoprotein-associated protein N4.3e-0538.27Show/hide
Query:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

P63163 Small nuclear ribonucleoprotein-associated protein N4.3e-0538.27Show/hide
Query:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Q17QN3 Small nuclear ribonucleoprotein-associated protein N4.3e-0538.27Show/hide
Query:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Q5R6I0 Small nuclear ribonucleoprotein-associated protein N4.3e-0538.27Show/hide
Query:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Q60HD3 Small nuclear ribonucleoprotein-associated protein N4.3e-0538.27Show/hide
Query:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Arabidopsis top hitse value%identityAlignment
AT4G18372.1 Small nuclear ribonucleoprotein family protein4.4e-3766.07Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQ +  S     S  E +    D + ++RKLLFR+ML+GIKDGRFFLG+F+C+DKQGNIILQDTVEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
         +IDEQL+L+ +
Subjt:  STIDEQLALLSV

AT4G20440.2 small nuclear ribonucleoprotein associated protein B2.2e-0427.38Show/hide
Query:  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD
        S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       ++ +    ++R LGL+L+     +S  V+
Subjt:  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD

AT4G20440.3 small nuclear ribonucleoprotein associated protein B2.2e-0427.38Show/hide
Query:  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD
        S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       ++ +    ++R LGL+L+     +S  V+
Subjt:  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCGCGTAGGAAAGGTGAGAAAGCTGCTGTTCCGTCGAAT
GCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCAGCTTTTACTGCCTTGACAAGCAAGGAAATATCATTCTTCAAGACACAGTAGAGTATCGTAGCACTCGGCGTA
GCTCACCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATTCCCAACTCTTGCCGTGTATCTTGCCATGTAGATAGTACCATTGATGAACAATTGGCACTGCTA
TCAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCGCGTAGGAAAGGTGAGAAAGCTGCTGTTCCGTCGAAT
GCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCAGCTTTTACTGCCTTGACAAGCAAGGAAATATCATTCTTCAAGACACAGTAGAGTATCGTAGCACTCGGCGTA
GCTCACCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATTCCCAACTCTTGCCGTGTATCTTGCCATGTAGATAGTACCATTGATGAACAATTGGCACTGCTA
TCAGTTTAG
Protein sequenceShow/hide protein sequence
MEQESGGSMVQDGSNVESNPESLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCLDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL
SV