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Lsi02G009360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G009360
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L33-like
Genome locationchr02:9162787..9164352
RNA-Seq ExpressionLsi02G009360
SyntenyLsi02G009360
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0009536 - plastid (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR001705 - Ribosomal protein L33
IPR011332 - Zinc-binding ribosomal protein
IPR038584 - Ribosomal protein L33 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575038.1 hypothetical protein SDJN03_25677, partial [Cucurbita argyrosperma subsp. sororia]2.6e-2395.08Show/hide
Query:  RIAEMGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        R  EMGDKKKK TMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  RIAEMGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

KAG7013613.1 rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma]7.5e-2398.28Show/hide
Query:  EMGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        EMGDKKKK TMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  EMGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

XP_004135554.1 uncharacterized protein LOC101212288 [Cucumis sativus]2.8e-2298.25Show/hide
Query:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKK TMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

XP_007223555.1 uncharacterized protein LOC18791548 [Prunus persica]3.1e-2192.98Show/hide
Query:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKK T+FIRLVSAAGTGFFYVKRKPTK+TEKLEFRK+DPRVNRHVLFTEAKMK
Subjt:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

XP_022137876.1 uncharacterized protein LOC111009198 [Momordica charantia]4.8e-2296.49Show/hide
Query:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKK TMFIRLVSAAGTGFFYVKRKPTK+TEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

TrEMBL top hitse value%identityAlignment
A0A0A0LVW9 Uncharacterized protein1.4e-2298.25Show/hide
Query:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKK TMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

A0A1S3BBV4 50S ribosomal protein L33-like1.4e-2298.25Show/hide
Query:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKK TMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

A0A6J1CA39 uncharacterized protein LOC1110095991.4e-2298.25Show/hide
Query:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKK TMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

A0A6J1H6A1 uncharacterized protein LOC1114599911.4e-2298.25Show/hide
Query:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKK TMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

A0A6J1KVU2 uncharacterized protein LOC1114991571.4e-2298.25Show/hide
Query:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKK TMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

SwissProt top hitse value%identityAlignment
A8GY80 50S ribosomal protein L331.2e-1062.96Show/hide
Query:  KKKVTMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Subjt:  KKKVTMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

B3CRY6 50S ribosomal protein L334.0e-1163.79Show/hide
Query:  MGDKKKKVTMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        M  KKKKV   ++LVS+AGTG F+VK R P   TEKL FRKYDP+V +HV FTEAK+K
Subjt:  MGDKKKKVTMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

B6IN38 50S ribosomal protein L331.1e-1166.04Show/hide
Query:  KKVTMFIRLVSAAGTGFFYVKRK-PTKITEKLEFRKYDPRVNRHVLFTEAKMK
        K+ T+ I+LVS+A TGFFYVK+K P K TEKLEF+KYDP   +HV+F EAKMK
Subjt:  KKVTMFIRLVSAAGTGFFYVKRK-PTKITEKLEFRKYDPRVNRHVLFTEAKMK

Q1RGQ4 50S ribosomal protein L331.2e-1062.96Show/hide
Query:  KKKVTMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Subjt:  KKKVTMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

Q2W1A2 50S ribosomal protein L331.4e-1166.04Show/hide
Query:  KKVTMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        K  T+ I+L+S AGTGFFYV K+ P K TEKLEFRKYDP V +HV F EAK+K
Subjt:  KKVTMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

Arabidopsis top hitse value%identityAlignment
AT3G06320.1 Ribosomal protein L33 family protein2.6e-2186.21Show/hide
Query:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Subjt:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK

AT5G18790.1 Ribosomal protein L33 family protein2.6e-2186.21Show/hide
Query:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Subjt:  MGDKKKKVTMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAATTCACGTATCGCCGAAATGGGTGACAAGAAAAAGAAAGTTACCATGTTCATTCGACTTGTATCAGCTGCTGGGACTGGATTCTTCTATGTTAAAAGAAAGCC
AACCAAAATTACAGAGAAGCTCGAGTTCCGGAAATACGATCCTCGGGTCAATCGACATGTTTTGTTTACGGAAGCGAAAATGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAATTCACGTATCGCCGAAATGGGTGACAAGAAAAAGAAAGTTACCATGTTCATTCGACTTGTATCAGCTGCTGGGACTGGATTCTTCTATGTTAAAAGAAAGCC
AACCAAAATTACAGAGAAGCTCGAGTTCCGGAAATACGATCCTCGGGTCAATCGACATGTTTTGTTTACGGAAGCGAAAATGAAGTGAAAGAAGAGAGGAAGAAAAATCA
TCCTTTTAAACTGGATTGGACCTATTCTTTTTCCAAATTTCTTTTGGTCCTTAGTTTTTGGAGCTTTGCAATTAGTCTTCTTCTTCTCCATTTTAGACTGATGTTTCACA
TTTGCTAGTCTTTTCCCTGGCTCATCTTCATCCTTTGTGAAAATGAACTGAGTCGAAAATGTATGTTTGTACATCAAATTCTATGGCCAGAGTCGAAAATGAACCAGAGG
GACTAAAATAATATTTAAATCTAATATAAATGTTCCTTAGTTCGACATCACCATGTCCATACTATTGCAATTCCTATTATAACTTATCTAAAATCCAATTAATTTCTATA
TGGAGTCTGGATATTTCTGCTGATATTATGTAATATGTTTTTTCCGGCCTAGAAAAGACATTAAAGTCAATGAAGCATTCTTTAGAAAAGTAAAAGAAATTAAGCA
Protein sequenceShow/hide protein sequence
MKNSRIAEMGDKKKKVTMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK