CuGenDBv2

Gene ID	Lsi02G009400
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	30-kDa cleavage and polyadenylation specificity factor 30
Genome location	chr02:9232421..9233919
RNA-Seq Expression	Lsi02G009400
Synteny	Lsi02G009400
Gene Ontology terms	GO:0048024 - regulation of mRNA splicing, via spliceosome (biological process) GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004141524.1 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis sativus]

2.0e-75

54.68

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Query:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM
        QELEP +GE LASLLYLEPD                               DIVPFEDNEEEEEEESEEEEEESFGQS GLP QGRGR RG+MWPP+MPM
Subjt:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM

Query:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPY--DPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMG
        GR ARPFHGMQGFP GMMGPDGLSYG VTPDGF MPDIFGMTP GFGPY   PRFSGDFMGPP+ +MF GRPSQP AMF P+GFGMMMGQG GPFMGGMG
Subjt:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPY--DPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMG

Query:  V---------------------TVPSSQNINRAVKRDQ-------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK
        V                      VPSSQN+NRA+KRDQ        ++ M     V+ ++  R  +E+          D++    +    E      +A 
Subjt:  V---------------------TVPSSQNINRAVKRDQ-------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK

Query:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ
         R++H +       ++KRRGSEGD+TAIS+Q
Subjt:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ

XP_008445183.1 PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo]

2.8e-77

56.19

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Query:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM
        QELEP IGE LASLLYLEPD                               DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGR RGIMWPP+MPM
Subjt:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM

Query:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVT
        GR ARPFHGMQ FP GMMGPDGLSYG VTPDGF MPDIFGM P GFGPY PRFSGDFMGPPS +MF GRPSQPGAMF+P GFGMMMGQG GPFMGGMGVT
Subjt:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVT

Query:  ---------------------VPSSQNINRAVKRDQ---------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK
                             VPS+QNINRA+KRDQ           I   D    Q    +   + +          D++  + +    E      +A 
Subjt:  ---------------------VPSSQNINRAVKRDQ---------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK

Query:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ
         R++H +       ++KRRGSEGD+TAISDQ
Subjt:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ

XP_022140120.1 30-kDa cleavage and polyadenylation specificity factor 30 [Momordica charantia]

6.3e-77

55.89

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Query:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM
        QELEP IGE LASLLYLEPD                               DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGR RGIMWPP+MPM
Subjt:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM

Query:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVT
        GR ARPFHGMQGFP GMMGPDGLSYG VTPDGF MPDIFGM P GFGPY PRFSGDFMGPPS +MF GRPSQPGAMF P GFGMMMGQG GPFMGGMGVT
Subjt:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVT

Query:  ---------------------VPSSQNINRAVKRDQ---------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK
                             VP SQN+NR VKRDQ           I   D    Q    +    E+          D++  + +    E      +A 
Subjt:  ---------------------VPSSQNINRAVKRDQ---------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK

Query:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ
         R++H +       ++KRRGSEGD+T +SDQ
Subjt:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ

XP_038889902.1 30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispida]

7.7e-75

54.68

Show/hide

Query:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM
        QELEP IGE LASLLYLEPD                               DIVPFEDNEEEEEEESEEEEEESFGQSVGLP QGRGR RGI+WPP+MPM
Subjt:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM

Query:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGV-
        GR ARPF GMQGFP GMMGPDGLSYG VTPDGF MPDIFGM P GFGPY PRFSGDFMGPP+ +MF GRPSQPGAMF P GFGMMMGQG GPFMGGMG+ 
Subjt:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGV-

Query:  --------------------TVPSSQNINRAVKRDQ---------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK
                             VPSSQN+NRA+KRDQ           I  +D         + R  E+          D++  + +    E      +A 
Subjt:  --------------------TVPSSQNINRAVKRDQ---------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK

Query:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ
         R++H +       ++KRRGSEGD+TAIS+Q
Subjt:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ

XP_038894441.1 30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispida]

1.7e-77

58.01

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Query:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM
        QELEP IGE LASLLYLEPD                               DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGR RGIMWPP+MPM
Subjt:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM

Query:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVT
        GR ARPFHGMQGFP GM+GPDGLSYG VTP+GF MPDIFGM P GFGPY PRFSGDFMGPPS +MF GRPSQPGAMFSP+GFGMMMGQG GPFMGGMGVT
Subjt:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVT

Query:  ---------------------VPSSQNINRAVKRDQL--LIEMIDILWV---QTKTRARRCQEVDMMMECNIS----MDQKLILMSNMEWELPLGMKKAK
                             VPS QNINRAVKRDQ     +  D   V   Q K +       D  M+         D++  + +    E      +A 
Subjt:  ---------------------VPSSQNINRAVKRDQL--LIEMIDILWV---QTKTRARRCQEVDMMMECNIS----MDQKLILMSNMEWELPLGMKKAK

Query:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ
         R++H   +G E    KRRGSEGD+TAISDQ
Subjt:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KSR6 Uncharacterized protein

9.8e-76

54.68

Show/hide

Query:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM
        QELEP +GE LASLLYLEPD                               DIVPFEDNEEEEEEESEEEEEESFGQS GLP QGRGR RG+MWPP+MPM
Subjt:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM

Query:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPY--DPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMG
        GR ARPFHGMQGFP GMMGPDGLSYG VTPDGF MPDIFGMTP GFGPY   PRFSGDFMGPP+ +MF GRPSQP AMF P+GFGMMMGQG GPFMGGMG
Subjt:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPY--DPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMG

Query:  V---------------------TVPSSQNINRAVKRDQ-------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK
        V                      VPSSQN+NRA+KRDQ        ++ M     V+ ++  R  +E+          D++    +    E      +A 
Subjt:  V---------------------TVPSSQNINRAVKRDQ-------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK

Query:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ
         R++H +       ++KRRGSEGD+TAIS+Q
Subjt:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ

A0A1S3BC28 30-kDa cleavage and polyadenylation specificity factor 30

1.4e-77

56.19

Show/hide

Query:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM
        QELEP IGE LASLLYLEPD                               DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGR RGIMWPP+MPM
Subjt:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM

Query:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVT
        GR ARPFHGMQ FP GMMGPDGLSYG VTPDGF MPDIFGM P GFGPY PRFSGDFMGPPS +MF GRPSQPGAMF+P GFGMMMGQG GPFMGGMGVT
Subjt:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVT

Query:  ---------------------VPSSQNINRAVKRDQ---------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK
                             VPS+QNINRA+KRDQ           I   D    Q    +   + +          D++  + +    E      +A 
Subjt:  ---------------------VPSSQNINRAVKRDQ---------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK

Query:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ
         R++H +       ++KRRGSEGD+TAISDQ
Subjt:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ

A0A5D3C2W1 30-kDa cleavage and polyadenylation specificity factor 30

1.4e-77

56.19

Show/hide

Query:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM
        QELEP IGE LASLLYLEPD                               DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGR RGIMWPP+MPM
Subjt:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM

Query:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVT
        GR ARPFHGMQ FP GMMGPDGLSYG VTPDGF MPDIFGM P GFGPY PRFSGDFMGPPS +MF GRPSQPGAMF+P GFGMMMGQG GPFMGGMGVT
Subjt:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVT

Query:  ---------------------VPSSQNINRAVKRDQ---------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK
                             VPS+QNINRA+KRDQ           I   D    Q    +   + +          D++  + +    E      +A 
Subjt:  ---------------------VPSSQNINRAVKRDQ---------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK

Query:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ
         R++H +       ++KRRGSEGD+TAISDQ
Subjt:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ

A0A6J1CE78 30-kDa cleavage and polyadenylation specificity factor 30

3.1e-77

55.89

Show/hide

Query:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM
        QELEP IGE LASLLYLEPD                               DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGR RGIMWPP+MPM
Subjt:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM

Query:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVT
        GR ARPFHGMQGFP GMMGPDGLSYG VTPDGF MPDIFGM P GFGPY PRFSGDFMGPPS +MF GRPSQPGAMF P GFGMMMGQG GPFMGGMGVT
Subjt:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVT

Query:  ---------------------VPSSQNINRAVKRDQ---------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK
                             VP SQN+NR VKRDQ           I   D    Q    +    E+          D++  + +    E      +A 
Subjt:  ---------------------VPSSQNINRAVKRDQ---------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK

Query:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ
         R++H +       ++KRRGSEGD+T +SDQ
Subjt:  VRTKHLDDQGMERRRRKRRGSEGDSTAISDQ

A0A6J1JWQ9 30-kDa cleavage and polyadenylation specificity factor 30-like

1.6e-73

54.85

Show/hide

Query:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM
        QELEP IGE LASLLYLEPD                               DIVPFEDNEEEEEEESEEEEEESFGQSVG PAQGRGR RGIMWPP+MPM
Subjt:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM

Query:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVT
        GR ARPFHGMQGFP GMMGPDG+SYG VTPDGF MPDIFGM P GF PY  RFSG+FM P S +MF GRPSQPGAMF P GFGMMMGQG GPFMGGMGVT
Subjt:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVT

Query:  --------------------VPSSQNINRAVKRDQ---------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAKV
                            VPSSQN+NRA+KRDQ           I   D    Q    +    E+          D++  + + +  E      +A  
Subjt:  --------------------VPSSQNINRAVKRDQ---------LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAKV

Query:  RTKHLDDQGMERRRRKRRGSEGDSTAISDQ
        R++H +       ++KRRGSEGD+TAISDQ
Subjt:  RTKHLDDQGMERRRRKRRGSEGDSTAISDQ

SwissProt top hits

e value

%identity

Alignment

A9LNK9 30-kDa cleavage and polyadenylation specificity factor 30

5.4e-39

Show/hide

Query:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM
        QELEP +GE LASLLYLEPD                               DIVPFEDNEEEEEEE E EEEE   +S+    QGRGR RGIMWPP MP+
Subjt:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM

Query:  GRCARPFHGMQGFPLGMMGP-DGLSYGSVTPDGFS-MPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMG
        GR  RP  GM GFPLG+MGP D   YG   P G++ MPD FGM P  FGPY PRF GDF GP   +MF GRP Q    F   G+G MMG G GP MGGMG
Subjt:  GRCARPFHGMQGFPLGMMGP-DGLSYGSVTPDGFS-MPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMG

Q0DA50 Zinc finger CCCH domain-containing protein 45

1.9e-36

51.44

Show/hide

Query:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM
        QELEPFIGE LASLLYLEPD                               DIV F+DNEEEEEEESEEEEE +     G  +QGRGR RG+MWPP MPM
Subjt:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM

Query:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFM--GPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMG
         R   P  G +GFP  M+G DG  +G     GF MPD FG+ P GF P+ PRF GDF   GP   ++F GRP QPG MF P G  MMMG G GP MGG+G
Subjt:  GRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFM--GPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMG

Query:  VTVPSSQN
        +  P   N
Subjt:  VTVPSSQN

Arabidopsis top hits

e value

%identity

Alignment

AT1G30460.1 cleavage and polyadenylation specificity factor 30

3.9e-40

Show/hide

Query:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM
        QELEP +GE LASLLYLEPD                               DIVPFEDNEEEEEEE E EEEE   +S+    QGRGR RGIMWPP MP+
Subjt:  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPM

Query:  GRCARPFHGMQGFPLGMMGP-DGLSYGSVTPDGFS-MPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMG
        GR  RP  GM GFPLG+MGP D   YG   P G++ MPD FGM P  FGPY PRF GDF GP   +MF GRP Q    F   G+G MMG G GP MGGMG
Subjt:  GRCARPFHGMQGFPLGMMGP-DGLSYGSVTPDGFS-MPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTTCGTGTTCTTCTAATTTGGCTTGAAACTACTCATTGTCTTGGCTTGTTTCATGTCTACCATCCACATATCAGTAGCCAAGAGCTAGAGCCCTTTATTGGTGAGCT
GGCGTCTTTACTTTATCTTGAGCCAGATGATATCGTCCCGTTTGAGGATAATGAAGAAGAGGAAGAGGAAGAAAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAATCCG
TTGGTCTACCAGCTCAGGGTAGAGGAAGAGTCAGGGGAATCATGTGGCCCCCATATATGCCAATGGGACGTTGCGCTCGACCCTTTCATGGAATGCAGGGTTTTCCACTT
GGGATGATGGGTCCGGATGGGTTGTCTTATGGTTCTGTTACACCTGATGGATTTTCCATGCCTGACATTTTTGGGATGACACCTTGTGGTTTTGGTCCATATGATCCTAG
GTTTTCCGGTGATTTTATGGGTCCCCCATCTTTTCTAATGTTTCACGGACGACCTTCTCAACCTGGGGCCATGTTCTCCCCTACTGGGTTTGGGATGATGATGGGTCAAG
GATGTGGCCCCTTTATGGGTGGGATGGGAGTTACTGTACCCTCATCTCAGAACATTAATCGAGCTGTTAAGAGGGACCAACTATTGATCGAAATGATAGATATATTGTGG
GTCCAGACCAAAACAAGGGCCAGGAGATGCCAGGAAGTGGACATGATGATGGAATGCAATATAAGCATGGATCAAAAGCTTATTCTGATGAGCAATATGGAATGGGAACT
ACCTTTAGGAATGAAGAAAGCGAAGGTGAGGACGAAGCACCTCGACGATCAAGGCATGGAGAGGAGAAGAAGAAAGCGGAGAGGCTCAGAAGGAGATTCGACTGCAATCT
CTGATCAATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MFRVLLIWLETTHCLGLFHVYHPHISSQELEPFIGELASLLYLEPDDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPMGRCARPFHGMQGFPL
GMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVTVPSSQNINRAVKRDQLLIEMIDILW
VQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAKVRTKHLDDQGMERRRRKRRGSEGDSTAISDQ

Lsi02G009400 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome