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Lsi02G009440 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G009440
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein
Genome locationchr02:9344788..9345240
RNA-Seq ExpressionLsi02G009440
SyntenyLsi02G009440
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583852.1 hypothetical protein SDJN03_19784, partial [Cucurbita argyrosperma subsp. sororia]1.4e-6186.49Show/hide
Query:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL
        I + AAV+ S+ +I LAG SNARDLRPSEHGLEYQNPGA+ENSSP MQSFFKGNSWSSSDVALPKAMNTSLP QWW RSHR+RSGAAADGG GDHIRGAL
Subjt:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL

Query:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSSSSLSVSETTNIIANK
        LVASLVCG+IGVSLLIASAFIY FKFRKQ++SSSSLSVSETTNIIANK
Subjt:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSSSSLSVSETTNIIANK

XP_022927447.1 uncharacterized protein LOC111434271 [Cucurbita moschata]1.9e-6185.81Show/hide
Query:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL
        I + AA++ S+ +I LAG SNARDLRPSEHGLEYQNPGA+ENSSP MQSFFKGNSWSSSDVALPKAMNTSLP QWW RSHR+RSGAAADGG GDHIRGAL
Subjt:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL

Query:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSSSSLSVSETTNIIANK
        LVASLVCG+IGVSLLIASAFIY FKFRKQ++SSSSLSVSETTNIIANK
Subjt:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSSSSLSVSETTNIIANK

XP_023000949.1 uncharacterized protein LOC111495232 [Cucurbita maxima]3.8e-6287.16Show/hide
Query:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL
        I +FAA++ SL +I LAG SNARDLRPSEHGLEYQNPGA+ENSSP MQSFFKGNSWSSSDVALPKAMNTSLP QWW RSHR+RS AAADGGSGDHIRGAL
Subjt:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL

Query:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSSSSLSVSETTNIIANK
        LVASLVCG+IGVSLLIASAFIY FKFRKQ++SSSSLSVSETTNIIANK
Subjt:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSSSSLSVSETTNIIANK

XP_023519911.1 uncharacterized protein LOC111783236 [Cucurbita pepo subsp. pepo]2.5e-6185.81Show/hide
Query:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL
        I + AA++ SL +I LAG SNARDLRPSEHGLEYQNPGA+ENSSP MQSFFKGNSWSSSDVALPKAMNTSLP QWW RSHR+RSGAA DGG GDHIRGAL
Subjt:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL

Query:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSSSSLSVSETTNIIANK
        LVASLVCG+IGVSLLIASAFIY FKFRKQ++SSSSLSVSETTNIIANK
Subjt:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSSSSLSVSETTNIIANK

XP_038895122.1 uncharacterized protein LOC120083432 [Benincasa hispida]7.2e-6994.59Show/hide
Query:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL
        IPSFAAVF SL +ILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWW RSHRNRSGAAADGG GDHIRGAL
Subjt:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL

Query:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSSSSLSVSETTNIIANK
        LVASLVCGIIG+SLLIASAFIYFFKFRKQS+SSSSLSVSETTNII NK
Subjt:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSSSSLSVSETTNIIANK

TrEMBL top hitse value%identityAlignment
A0A0A0LVV5 Uncharacterized protein2.0e-5379.87Show/hide
Query:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL
        IPS AA      ++LLA +SNARDLRPSEHGL+YQNP A+ +SSPQMQSFF+GNSWS+SDVALPKAMNTSLPPQW  R+HRNRSGA+A    GDHIRGAL
Subjt:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL

Query:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSK-SSSSLSVSETTNIIANK
        LVASLVCGIIGVSLL+ASAFIYFFKFRKQS+ SSSS+SVSETTNIIANK
Subjt:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSK-SSSSLSVSETTNIIANK

A0A1S3BC63 uncharacterized protein LOC1034883241.6e-5883.66Show/hide
Query:  IPSFAAVFFSLTLI--LLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRG
        IPSFA ++ SL LI  LLA +SNARDLRPSEHGL+YQNP A++NSSPQMQSFFKGNSWS+SDVALPKAMNTSLPPQWW RSHRNRSGA+A G  GDHIRG
Subjt:  IPSFAAVFFSLTLI--LLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRG

Query:  ALLVASLVCGIIGVSLLIASAFIYFFKFRKQSK---SSSSLSVSETTNIIANK
        ALLVASLVCGIIGVSLL+ASAFIYFFKFRKQS+   SSSSLS SETTNIIANK
Subjt:  ALLVASLVCGIIGVSLLIASAFIYFFKFRKQSK---SSSSLSVSETTNIIANK

A0A5D3C2L6 Uncharacterized protein1.6e-5883.66Show/hide
Query:  IPSFAAVFFSLTLI--LLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRG
        IPSFA ++ SL LI  LLA +SNARDLRPSEHGL+YQNP A++NSSPQMQSFFKGNSWS+SDVALPKAMNTSLPPQWW RSHRNRSGA+A G  GDHIRG
Subjt:  IPSFAAVFFSLTLI--LLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRG

Query:  ALLVASLVCGIIGVSLLIASAFIYFFKFRKQSK---SSSSLSVSETTNIIANK
        ALLVASLVCGIIGVSLL+ASAFIYFFKFRKQS+   SSSSLS SETTNIIANK
Subjt:  ALLVASLVCGIIGVSLLIASAFIYFFKFRKQSK---SSSSLSVSETTNIIANK

A0A6J1EH69 uncharacterized protein LOC1114342719.1e-6285.81Show/hide
Query:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL
        I + AA++ S+ +I LAG SNARDLRPSEHGLEYQNPGA+ENSSP MQSFFKGNSWSSSDVALPKAMNTSLP QWW RSHR+RSGAAADGG GDHIRGAL
Subjt:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL

Query:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSSSSLSVSETTNIIANK
        LVASLVCG+IGVSLLIASAFIY FKFRKQ++SSSSLSVSETTNIIANK
Subjt:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSSSSLSVSETTNIIANK

A0A6J1KLE3 uncharacterized protein LOC1114952321.8e-6287.16Show/hide
Query:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL
        I +FAA++ SL +I LAG SNARDLRPSEHGLEYQNPGA+ENSSP MQSFFKGNSWSSSDVALPKAMNTSLP QWW RSHR+RS AAADGGSGDHIRGAL
Subjt:  IPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL

Query:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSSSSLSVSETTNIIANK
        LVASLVCG+IGVSLLIASAFIY FKFRKQ++SSSSLSVSETTNIIANK
Subjt:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSSSSLSVSETTNIIANK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30515.1 unknown protein1.2e-1036.84Show/hide
Query:  PSFAAVFFSLTLILLAGISNARDLRPSEHGLE-YQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL
        P   ++     ++L + I NAR+LRPS+HGLE Y  PG     S +M SFF     SS+D+    + ++S+ P       +  S    D    +H+   L
Subjt:  PSFAAVFFSLTLILLAGISNARDLRPSEHGLE-YQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGAL

Query:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSS
        +V SLVCG+ GV+L++ASA IYF  + K   SS
Subjt:  LVASLVCGIIGVSLLIASAFIYFFKFRKQSKSS

AT4G21740.1 unknown protein5.0e-1241.35Show/hide
Query:  LILLAGISNARDLRPSEHGLEYQ--NPGAMENSSP-QMQSFFKGNSWSSS-----DVALPK--AMNTSLPPQWWTRSHRNRSGAAADGGSGDHI-RGALL
        L++  G S A +LRPS+HGL+YQ  +P    +S P +M+SFF G+S SSS        LPK  A +      WW      R GA   G   DH+ R   L
Subjt:  LILLAGISNARDLRPSEHGLEYQ--NPGAMENSSP-QMQSFFKGNSWSSS-----DVALPK--AMNTSLPPQWWTRSHRNRSGAAADGGSGDHI-RGALL

Query:  VASLVCGIIGVSLLIASAFIYFFKFRKQSKSSS
         AS++CG+ GV+LL+    IYFF++RK + S+S
Subjt:  VASLVCGIIGVSLLIASAFIYFFKFRKQSKSSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATTCCCTCATTCGCCGCCGTCTTCTTCTCCCTCACCCTCATTCTCCTCGCCGGAATCTCAAATGCCAGAGACCTACGTCCATCGGAGCACGGCTTGGAGTACCA
AAACCCCGGCGCTATGGAAAATTCCTCTCCGCAGATGCAATCCTTCTTCAAAGGAAACTCCTGGTCCTCCTCCGACGTCGCTCTTCCCAAGGCGATGAACACTAGCCTCC
CGCCGCAGTGGTGGACTCGTAGCCACCGTAATCGCTCTGGAGCCGCTGCCGATGGAGGCAGCGGAGATCACATTCGTGGCGCATTGCTTGTGGCGAGTTTGGTATGTGGA
ATTATAGGCGTTTCTTTGCTGATTGCTTCTGCTTTTATTTACTTCTTTAAGTTCAGGAAGCAGAGTAAATCGTCGTCCTCGCTCTCTGTCTCTGAAACTACTAACATTAT
AGCTAACAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATTCCCTCATTCGCCGCCGTCTTCTTCTCCCTCACCCTCATTCTCCTCGCCGGAATCTCAAATGCCAGAGACCTACGTCCATCGGAGCACGGCTTGGAGTACCA
AAACCCCGGCGCTATGGAAAATTCCTCTCCGCAGATGCAATCCTTCTTCAAAGGAAACTCCTGGTCCTCCTCCGACGTCGCTCTTCCCAAGGCGATGAACACTAGCCTCC
CGCCGCAGTGGTGGACTCGTAGCCACCGTAATCGCTCTGGAGCCGCTGCCGATGGAGGCAGCGGAGATCACATTCGTGGCGCATTGCTTGTGGCGAGTTTGGTATGTGGA
ATTATAGGCGTTTCTTTGCTGATTGCTTCTGCTTTTATTTACTTCTTTAAGTTCAGGAAGCAGAGTAAATCGTCGTCCTCGCTCTCTGTCTCTGAAACTACTAACATTAT
AGCTAACAAGTGA
Protein sequenceShow/hide protein sequence
MAIPSFAAVFFSLTLILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGNSWSSSDVALPKAMNTSLPPQWWTRSHRNRSGAAADGGSGDHIRGALLVASLVCG
IIGVSLLIASAFIYFFKFRKQSKSSSSLSVSETTNIIANK