CuGenDBv2

Gene ID	Lsi02G009900
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	primase homolog protein isoform X1
Genome location	chr02:10002738..10007028
RNA-Seq Expression	Lsi02G009900
Synteny	Lsi02G009900
Gene Ontology terms	GO:0032508 - DNA duplex unwinding (biological process) GO:0003697 - single-stranded DNA binding (molecular function) GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domains	IPR006171 - TOPRIM domain IPR027032 - Twinkle-like protein IPR034154 - Archaeal primase DnaG/twinkle, TOPRIM domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008445790.1 PREDICTED: primase homolog protein isoform X2 [Cucumis melo]

3.3e-151

79.54

Show/hide

Query:  MSLNTTFNLNLNFNFNFN--HRSPPLSHPLNDFPFSSSPSRF-LRFCTTRLSSAVSHALPSPSP----SPPPDLFMI----------------EQCKGGR
        M +N+TF  N NFNFNF   HRS P S  LN+F  SSSPSRF LRFCTTRLSSA+SHA P P P        DL  I                 +CKGGR
Subjt:  MSLNTTFNLNLNFNFNFN--HRSPPLSHPLNDFPFSSSPSRF-LRFCTTRLSSAVSHALPSPSP----SPPPDLFMI----------------EQCKGGR

Query:  FVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGRQVAIAFTY
         +ERSLSLHVIPTGDFAMWRCF+ ECGWAGRIFADGRLAFNGFS+T KMVGRS+KESLVLEPLCDELI+YF+ RMIS+ETLERNVVMQ+ GRQVAIAFTY
Subjt:  FVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGRQVAIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGT K LYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDT+P IEKD+AYQYLW CKDYLDKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR

Query:  IILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV
        IILATDSD PGQAL EELARRLGKHRCWRVDWPYKD FNRFKDANEV
Subjt:  IILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV

XP_011659247.1 primase homolog protein isoform X1 [Cucumis sativus]

2.3e-152

78.06

Show/hide

Query:  MSLNTTFNLNLNFNFNF---NHRSPPLSHPLNDFPFSSSPSRFLRFCTTRLSSAVSHALPSPSPSPPPDLFMIE------------------------QC
        M +N+TF  N NFNF F   NHRS P SH LN+F  SSSPSRFLRFCTTRLSSAVSHA     PSPPP   ++E                        +C
Subjt:  MSLNTTFNLNLNFNFNF---NHRSPPLSHPLNDFPFSSSPSRFLRFCTTRLSSAVSHALPSPSPSPPPDLFMIE------------------------QC

Query:  KGGRFVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGRQVAI
        KGGR +ERSLSLHVIPTGDFAMWRCFQ ECGWAG+IFADG+LAFNGF +  KMVGRS+KESLVLEPLCDELI+YF+ RMIS+ETLERNVVMQ+AGRQV I
Subjt:  KGGRFVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGRQVAI

Query:  AFTYRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLD
        AFTYRQNGQLVGCKYRTMDKRFWQEKGT K LYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDTVP IEKDTAYQYLWSCKDYLD
Subjt:  AFTYRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLD

Query:  KVSRIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV
        KVSR+ILATDSD PGQAL EELARRLGK+RCWRV WPYKD FNRFKDANEV
Subjt:  KVSRIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV

XP_016899150.1 PREDICTED: primase homolog protein isoform X1 [Cucumis melo]

8.1e-150

79.31

Show/hide

Query:  MSLNTTFNLNLNFNFNFN--HRSPPLSHPLNDFPFSSSPSRF-LRFCTTRLSSAVSHALPSPSP----SPPPDLFMI----------------EQCKGGR
        M +N+TF  N NFNFNF   HRS P S  LN+F  SSSPSRF LRFCTTRLSSA+SHA P P P        DL  I                 +CKGGR
Subjt:  MSLNTTFNLNLNFNFNFN--HRSPPLSHPLNDFPFSSSPSRF-LRFCTTRLSSAVSHALPSPSP----SPPPDLFMI----------------EQCKGGR

Query:  FVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGR-QVAIAFT
         +ERSLSLHVIPTGDFAMWRCF+ ECGWAGRIFADGRLAFNGFS+T KMVGRS+KESLVLEPLCDELI+YF+ RMIS+ETLERNVVMQ+ GR QVAIAFT
Subjt:  FVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGR-QVAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGT K LYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDT+P IEKD+AYQYLW CKDYLDKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS

Query:  RIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV
        RIILATDSD PGQAL EELARRLGKHRCWRVDWPYKD FNRFKDANEV
Subjt:  RIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV

XP_038893950.1 primase homolog protein isoform X1 [Benincasa hispida]

3.7e-163

85.59

Show/hide

Query:  MSLNTTFNLNLNFNF-NFNHRSPPLSHPLNDFP--FSSSPSRFLRFCTTRLSSAVSHALPSPSP----SPPPDLFMI----------------EQCKGGR
        MS NTTFNLNLNFNF NFNHRSPP SHP NDF   FSSSPSRFLRFCTTR SSAVSH  PSP P        DL  I                 +CKGGR
Subjt:  MSLNTTFNLNLNFNF-NFNHRSPPLSHPLNDFP--FSSSPSRFLRFCTTRLSSAVSHALPSPSP----SPPPDLFMI----------------EQCKGGR

Query:  FVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGRQVAIAFTY
        F+ERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVK VGRSA+ESLVLEPL DELI+YFNKRMIS+ETLERNVVMQIAGRQVAIAFTY
Subjt:  FVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGRQVAIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDA+ELIIVEGEMDKLSVEEAG LNCISVPGGAPSKVSTDTVPS EKDTAYQYLWSCKDYLDKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR

Query:  IILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV
        IILATDSDEPGQAL EELARRLGKHRCWRVDWPYKDDFNRFKDANE+
Subjt:  IILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV

XP_038893951.1 primase homolog protein isoform X2 [Benincasa hispida]

3.7e-163

85.34

Show/hide

Query:  MSLNTTFNLNLNFNF-NFNHRSPPLSHPLNDFP--FSSSPSRFLRFCTTRLSSAVSHALPSPSP----SPPPDLFMI----------------EQCKGGR
        MS NTTFNLNLNFNF NFNHRSPP SHP NDF   FSSSPSRFLRFCTTR SSAVSH  PSP P        DL  I                 +CKGGR
Subjt:  MSLNTTFNLNLNFNF-NFNHRSPPLSHPLNDFP--FSSSPSRFLRFCTTRLSSAVSHALPSPSP----SPPPDLFMI----------------EQCKGGR

Query:  FVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGRQVAIAFTY
        F+ERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVK VGRSA+ESLVLEPL DELI+YFNKRMIS+ETLERNVVMQIAGRQVAIAFTY
Subjt:  FVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGRQVAIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDA+ELIIVEGEMDKLSVEEAG LNCISVPGGAPSKVSTDTVPS EKDTAYQYLWSCKDYLDKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR

Query:  IILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEVT
        IILATDSDEPGQAL EELARRLGKHRCWRVDWPYKDDFNRFKDANE++
Subjt:  IILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEVT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LYN4 Toprim domain-containing protein

1.1e-152

78.06

Show/hide

Query:  MSLNTTFNLNLNFNFNF---NHRSPPLSHPLNDFPFSSSPSRFLRFCTTRLSSAVSHALPSPSPSPPPDLFMIE------------------------QC
        M +N+TF  N NFNF F   NHRS P SH LN+F  SSSPSRFLRFCTTRLSSAVSHA     PSPPP   ++E                        +C
Subjt:  MSLNTTFNLNLNFNFNF---NHRSPPLSHPLNDFPFSSSPSRFLRFCTTRLSSAVSHALPSPSPSPPPDLFMIE------------------------QC

Query:  KGGRFVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGRQVAI
        KGGR +ERSLSLHVIPTGDFAMWRCFQ ECGWAG+IFADG+LAFNGF +  KMVGRS+KESLVLEPLCDELI+YF+ RMIS+ETLERNVVMQ+AGRQV I
Subjt:  KGGRFVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGRQVAI

Query:  AFTYRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLD
        AFTYRQNGQLVGCKYRTMDKRFWQEKGT K LYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDTVP IEKDTAYQYLWSCKDYLD
Subjt:  AFTYRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLD

Query:  KVSRIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV
        KVSR+ILATDSD PGQAL EELARRLGK+RCWRV WPYKD FNRFKDANEV
Subjt:  KVSRIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV

A0A1S3BDI8 primase homolog protein isoform X2

1.6e-151

79.54

Show/hide

Query:  MSLNTTFNLNLNFNFNFN--HRSPPLSHPLNDFPFSSSPSRF-LRFCTTRLSSAVSHALPSPSP----SPPPDLFMI----------------EQCKGGR
        M +N+TF  N NFNFNF   HRS P S  LN+F  SSSPSRF LRFCTTRLSSA+SHA P P P        DL  I                 +CKGGR
Subjt:  MSLNTTFNLNLNFNFNFN--HRSPPLSHPLNDFPFSSSPSRF-LRFCTTRLSSAVSHALPSPSP----SPPPDLFMI----------------EQCKGGR

Query:  FVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGRQVAIAFTY
         +ERSLSLHVIPTGDFAMWRCF+ ECGWAGRIFADGRLAFNGFS+T KMVGRS+KESLVLEPLCDELI+YF+ RMIS+ETLERNVVMQ+ GRQVAIAFTY
Subjt:  FVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGRQVAIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGT K LYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDT+P IEKD+AYQYLW CKDYLDKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR

Query:  IILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV
        IILATDSD PGQAL EELARRLGKHRCWRVDWPYKD FNRFKDANEV
Subjt:  IILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV

A0A1S4DT27 primase homolog protein isoform X4

1.1e-149

79.25

Show/hide

Query:  MSLNTTFNLNLNFNFNFN--HRSPPLSHPLNDFPFSSSPSRF-LRFCTTRLSSAVSHALPSPSP----SPPPDLFMI----------------EQCKGGR
        M +N+TF  N NFNFNF   HRS P S  LN+F  SSSPSRF LRFCTTRLSSA+SHA P P P        DL  I                 +CKGGR
Subjt:  MSLNTTFNLNLNFNFNFN--HRSPPLSHPLNDFPFSSSPSRF-LRFCTTRLSSAVSHALPSPSP----SPPPDLFMI----------------EQCKGGR

Query:  FVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGR-QVAIAFT
         +ERSLSLHVIPTGDFAMWRCF+ ECGWAGRIFADGRLAFNGFS+T KMVGRS+KESLVLEPLCDELI+YF+ RMIS+ETLERNVVMQ+ GR QVAIAFT
Subjt:  FVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGR-QVAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGT K LYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDT+P IEKD+AYQYLW CKDYLDKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS

Query:  RIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANE
        RIILATDSD PGQAL EELARRLGKHRCWRVDWPYKD FNRFKDANE
Subjt:  RIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANE

A0A1S4DTX2 primase homolog protein isoform X1

3.9e-150

79.31

Show/hide

Query:  MSLNTTFNLNLNFNFNFN--HRSPPLSHPLNDFPFSSSPSRF-LRFCTTRLSSAVSHALPSPSP----SPPPDLFMI----------------EQCKGGR
        M +N+TF  N NFNFNF   HRS P S  LN+F  SSSPSRF LRFCTTRLSSA+SHA P P P        DL  I                 +CKGGR
Subjt:  MSLNTTFNLNLNFNFNFN--HRSPPLSHPLNDFPFSSSPSRF-LRFCTTRLSSAVSHALPSPSP----SPPPDLFMI----------------EQCKGGR

Query:  FVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGR-QVAIAFT
         +ERSLSLHVIPTGDFAMWRCF+ ECGWAGRIFADGRLAFNGFS+T KMVGRS+KESLVLEPLCDELI+YF+ RMIS+ETLERNVVMQ+ GR QVAIAFT
Subjt:  FVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGR-QVAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGT K LYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDT+P IEKD+AYQYLW CKDYLDKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS

Query:  RIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV
        RIILATDSD PGQAL EELARRLGKHRCWRVDWPYKD FNRFKDANEV
Subjt:  RIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV

A0A6J1CNI0 primase homolog protein isoform X1

1.1e-144

78.27

Show/hide

Query:  NFNFNHRSPPLSHPLNDFPFSSSPSRFLRFCTTRLSSAVSHALPSPSPSPPPDLFMIE------------------------QCKGGRFVERSLSLHVIP
        N  FNHR  PL HPLN F FSS P  FLRFC+TR SSA SHA   P PSPPP   ++E                        +CKGG   ERSLSLHV+P
Subjt:  NFNFNHRSPPLSHPLNDFPFSSSPSRFLRFCTTRLSSAVSHALPSPSPSPPPDLFMIE------------------------QCKGGRFVERSLSLHVIP

Query:  TGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGRQVAIAFTYRQNGQLVGCKYR
        TGDFAMWRC+ SECGWAGRIFADGRLAFNG  RTVK+VGRSAKESLVLEPL DELI YF+KRMI +ETLERN VMQIAGRQ  IAFTYRQNGQL+GCKYR
Subjt:  TGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGRQVAIAFTYRQNGQLVGCKYR

Query:  TMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTV-PSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPG
        T+DKRFWQEKGTEKLLYGIDDINDADE+IIVEGEMDKLSVEEAGFLNCISVPGGAP KVSTD+V PSIEKDTAYQYLWSCKDYLDKVS IILATDSDEPG
Subjt:  TMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTV-PSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPG

Query:  QALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV
        QAL EELARRLGKHRCWRVDWPYKDDFNRFKDANE+
Subjt:  QALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV

SwissProt top hits

e value

%identity

Alignment

B5X582 Twinkle homolog protein, chloroplastic/mitochondrial

1.9e-80

56.52

Show/hide

Query:  CKGGRFVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQ-IAGRQV
        C+GG   E+SLSL + P G  A W CF+ +CG  G + ADG LA        K+  +   E + LEPLCDE+  YF  R IS++TLERN VMQ   G ++
Subjt:  CKGGRFVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQ-IAGRQV

Query:  AIAFTYRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDY
         IAFTY Q G+LV CKYR++ K F+QE+ T ++LYG+DDI    E+IIVEGE+DKL++EEAGFLNC+SVP GAP+KVS+  +PS +KDT Y++LW+C DY
Subjt:  AIAFTYRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDY

Query:  LDKVSRIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV
        L K SRI++ATD D PGQA+ EE+ARRLGK RCWRV WP K +   FKDANEV
Subjt:  LDKVSRIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV

F4I6E6 Primase homolog protein

3.4e-74

53.94

Show/hide

Query:  QCKGGRFVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQ-IAGRQ
        +C+ G   E+SL+L++ P G  A W C + +CG  G +  DG+L         K+  +   ES+ LEPLCDE+  +F  R IS +TLERN VMQ     +
Subjt:  QCKGGRFVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQ-IAGRQ

Query:  VAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKD
        + IAFTY Q G+LV CKYR++ K+F QE+ T K+LYG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP GAP  VS+  +PS  KDTA++Y+W+C D
Subjt:  VAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKD

Query:  YLDKVSRIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV
        YL K SRI++ATD D PGQAL EELARRLGK RCW V WP K +   FKDANEV
Subjt:  YLDKVSRIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV

Arabidopsis top hits

e value

%identity

Alignment

AT1G30660.1 nucleic acid binding;nucleic acid binding

2.4e-75

53.94

Show/hide

Query:  QCKGGRFVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQ-IAGRQ
        +C+ G   E+SL+L++ P G  A W C + +CG  G +  DG+L         K+  +   ES+ LEPLCDE+  +F  R IS +TLERN VMQ     +
Subjt:  QCKGGRFVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQ-IAGRQ

Query:  VAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKD
        + IAFTY Q G+LV CKYR++ K+F QE+ T K+LYG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP GAP  VS+  +PS  KDTA++Y+W+C D
Subjt:  VAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKD

Query:  YLDKVSRIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV
        YL K SRI++ATD D PGQAL EELARRLGK RCW V WP K +   FKDANEV
Subjt:  YLDKVSRIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV

AT1G30680.1 toprim domain-containing protein

1.3e-81

56.52

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Query:  CKGGRFVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQ-IAGRQV
        C+GG   E+SLSL + P G  A W CF+ +CG  G + ADG LA        K+  +   E + LEPLCDE+  YF  R IS++TLERN VMQ   G ++
Subjt:  CKGGRFVERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQ-IAGRQV

Query:  AIAFTYRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDY
         IAFTY Q G+LV CKYR++ K F+QE+ T ++LYG+DDI    E+IIVEGE+DKL++EEAGFLNC+SVP GAP+KVS+  +PS +KDT Y++LW+C DY
Subjt:  AIAFTYRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDY

Query:  LDKVSRIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV
        L K SRI++ATD D PGQA+ EE+ARRLGK RCWRV WP K +   FKDANEV
Subjt:  LDKVSRIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEV

Sequences

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CDS sequence

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ATGTCATTAAACACCACTTTCAATTTGAATTTGAATTTCAACTTCAACTTCAATCATCGCTCTCCCCCTTTGTCTCATCCGCTAAACGATTTCCCCTTCTCCTCTTCTCC
TTCCCGCTTCCTTCGATTCTGCACTACCAGACTATCTTCCGCCGTTTCTCATGCTCTGCCGTCGCCGTCTCCGTCGCCACCACCAGATCTATTCATGATTGAACAGTGCA
AGGGTGGTCGTTTTGTGGAGAGGAGCTTATCGCTTCATGTGATTCCAACTGGAGATTTTGCAATGTGGAGGTGTTTCCAGTCTGAGTGTGGTTGGGCAGGCCGGATATTT
GCAGATGGCAGATTGGCATTTAATGGTTTCAGCAGAACTGTAAAGATGGTTGGACGTAGTGCAAAGGAGAGTTTGGTTTTGGAGCCTCTTTGTGATGAGCTAATCACTTA
CTTCAACAAGAGAATGATATCCAAAGAAACCTTAGAAAGGAATGTTGTTATGCAAATAGCTGGTCGTCAGGTTGCTATTGCATTTACTTATAGACAAAATGGACAGCTTG
TCGGTTGCAAGTACCGAACTATGGACAAGAGATTTTGGCAGGAGAAGGGTACAGAAAAGTTGTTGTATGGGATTGATGACATTAATGATGCAGATGAACTTATCATTGTT
GAAGGTGAAATGGATAAACTTTCAGTTGAAGAAGCTGGTTTCCTCAACTGTATCAGTGTTCCTGGTGGTGCCCCAAGCAAGGTTTCAACTGATACAGTTCCATCAATTGA
AAAGGATACTGCATACCAATATTTATGGAGCTGCAAAGACTACTTAGATAAGGTTTCCCGCATTATCTTGGCTACTGATAGCGATGAACCGGGGCAAGCTTTGACAGAAG
AGCTAGCACGTCGCCTTGGAAAACACAGATGTTGGCGCGTAGATTGGCCATATAAAGATGACTTCAACCGTTTTAAAGATGCCAATGAGGTAACCTTCCTCCTTTGA

mRNA sequence

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CTGAGAAAATTTCTGTGTGAAGCAGATAAGGCCGCTTCCACTCTGCTCTTCCATTTTTCTTCAAATCGATTGAATTCAAATGTCATTAAACACCACTTTCAATTTGAATT
TGAATTTCAACTTCAACTTCAATCATCGCTCTCCCCCTTTGTCTCATCCGCTAAACGATTTCCCCTTCTCCTCTTCTCCTTCCCGCTTCCTTCGATTCTGCACTACCAGA
CTATCTTCCGCCGTTTCTCATGCTCTGCCGTCGCCGTCTCCGTCGCCACCACCAGATCTATTCATGATTGAACAGTGCAAGGGTGGTCGTTTTGTGGAGAGGAGCTTATC
GCTTCATGTGATTCCAACTGGAGATTTTGCAATGTGGAGGTGTTTCCAGTCTGAGTGTGGTTGGGCAGGCCGGATATTTGCAGATGGCAGATTGGCATTTAATGGTTTCA
GCAGAACTGTAAAGATGGTTGGACGTAGTGCAAAGGAGAGTTTGGTTTTGGAGCCTCTTTGTGATGAGCTAATCACTTACTTCAACAAGAGAATGATATCCAAAGAAACC
TTAGAAAGGAATGTTGTTATGCAAATAGCTGGTCGTCAGGTTGCTATTGCATTTACTTATAGACAAAATGGACAGCTTGTCGGTTGCAAGTACCGAACTATGGACAAGAG
ATTTTGGCAGGAGAAGGGTACAGAAAAGTTGTTGTATGGGATTGATGACATTAATGATGCAGATGAACTTATCATTGTTGAAGGTGAAATGGATAAACTTTCAGTTGAAG
AAGCTGGTTTCCTCAACTGTATCAGTGTTCCTGGTGGTGCCCCAAGCAAGGTTTCAACTGATACAGTTCCATCAATTGAAAAGGATACTGCATACCAATATTTATGGAGC
TGCAAAGACTACTTAGATAAGGTTTCCCGCATTATCTTGGCTACTGATAGCGATGAACCGGGGCAAGCTTTGACAGAAGAGCTAGCACGTCGCCTTGGAAAACACAGATG
TTGGCGCGTAGATTGGCCATATAAAGATGACTTCAACCGTTTTAAAGATGCCAATGAGGTAACCTTCCTCCTTTGA

Protein sequence

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MSLNTTFNLNLNFNFNFNHRSPPLSHPLNDFPFSSSPSRFLRFCTTRLSSAVSHALPSPSPSPPPDLFMIEQCKGGRFVERSLSLHVIPTGDFAMWRCFQSECGWAGRIF
ADGRLAFNGFSRTVKMVGRSAKESLVLEPLCDELITYFNKRMISKETLERNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTEKLLYGIDDINDADELIIV
EGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALTEELARRLGKHRCWRVDWPYKDDFNRFKDANEVTFLL

Lsi02G009900 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome