; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G010010 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G010010
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr02:10161690..10162181
RNA-Seq ExpressionLsi02G010010
SyntenyLsi02G010010
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043344.1 hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa]7.3e-6780.49Show/hide
Query:  MIPILQKVSSFIHLLTSDPSPFPSLLL-LLIFTFHIPTCRFFSYHHFPRPSLYYNNCARHPKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQK
        MIP++QKV SF + LTSDPSPFPSLLL LLIFTFHIP CRFFSYHHFP   L+Y NC  + K+LCN I  SSPRRLP GGWALRAAPIALLV  SWLSQK
Subjt:  MIPILQKVSSFIHLLTSDPSPFPSLLL-LLIFTFHIPTCRFFSYHHFPRPSLYYNNCARHPKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQK

Query:  DSARVAAGKWGSQGCRVPTISEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM
        +SA VAA KWGSQGC V TISEHKAE EEIGGCTPWVLVG+I+LLFNMAQRQALIRHCLFVRSM
Subjt:  DSARVAAGKWGSQGCRVPTISEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM
KAE8653331.1 hypothetical protein Csa_023242 [Cucumis sativus]2.5e-6782.32Show/hide
Query:  MIPILQKVSSFIHLLTSDPSPFPS-LLLLLIFTFHIPTCRFFSYHHFPRPSLYYNNCARHPKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQK
        MIPI+QKVSSF H LTSDPSPFPS LLLLLIFTFHI  CRFFSYHHFP   L+Y NC  + K+LCN I ISSPRRLP GGWALRAAPIALLV  SWLSQK
Subjt:  MIPILQKVSSFIHLLTSDPSPFPS-LLLLLIFTFHIPTCRFFSYHHFPRPSLYYNNCARHPKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQK

Query:  DSARVAAGKWGSQGCRVPTISEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM
        +SA VAA KW SQG RV TISEHKAE EEIGGCTPWVLVGMI+LLFNMAQRQALIRHCLFVRSM
Subjt:  DSARVAAGKWGSQGCRVPTISEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM
KAG6573437.1 hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sororia]4.4e-5671.95Show/hide
Query:  MIPILQKVSSFIHLLTSDPSPFPS-LLLLLIFTFHIPTCRFFSYHHFPRPSLYYNNCARHPKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQK
        MIPI+ K+SS  H LTSDPSPFPS LLLLLIFT HIPTCRFFSY     PSLYY +CA     LCN +A+SSP+RLPCGGW+LR APIALLV  SWL++K
Subjt:  MIPILQKVSSFIHLLTSDPSPFPS-LLLLLIFTFHIPTCRFFSYHHFPRPSLYYNNCARHPKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQK

Query:  DSARVAAGKWGSQGCRVPTI---SEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV
        D+  VAA  WGS+ C VPTI    +H+ EAE IGGCTPWVLVGMILLLFNMAQRQALIRHCLFV
Subjt:  DSARVAAGKWGSQGCRVPTI---SEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV
TrEMBL top hitse value%identityAlignment
A0A0A0LW23 Uncharacterized protein1.5e-6581.88Show/hide
Query:  LQKVSSFIHLLTSDPSPFPS-LLLLLIFTFHIPTCRFFSYHHFPRPSLYYNNCARHPKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQKDSAR
        +QKVSSF H LTSDPSPFPS LLLLLIFTFHI  CRFFSYHHFP   L+Y NC  + K+LCN I ISSPRRLP GGWALRAAPIALLV  SWLSQK+SA 
Subjt:  LQKVSSFIHLLTSDPSPFPS-LLLLLIFTFHIPTCRFFSYHHFPRPSLYYNNCARHPKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQKDSAR

Query:  VAAGKWGSQGCRVPTISEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM
        VAA KW SQG RV TISEHKAE EEIGGCTPWVLVGMI+LLFNMAQRQALIRHCLFVRSM
Subjt:  VAAGKWGSQGCRVPTISEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM
A0A5A7TJ52 Uncharacterized protein3.5e-6780.49Show/hide
Query:  MIPILQKVSSFIHLLTSDPSPFPSLLL-LLIFTFHIPTCRFFSYHHFPRPSLYYNNCARHPKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQK
        MIP++QKV SF + LTSDPSPFPSLLL LLIFTFHIP CRFFSYHHFP   L+Y NC  + K+LCN I  SSPRRLP GGWALRAAPIALLV  SWLSQK
Subjt:  MIPILQKVSSFIHLLTSDPSPFPSLLL-LLIFTFHIPTCRFFSYHHFPRPSLYYNNCARHPKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQK

Query:  DSARVAAGKWGSQGCRVPTISEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM
        +SA VAA KWGSQGC V TISEHKAE EEIGGCTPWVLVG+I+LLFNMAQRQALIRHCLFVRSM
Subjt:  DSARVAAGKWGSQGCRVPTISEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCCCATACTGCAAAAAGTCTCATCTTTTATACATCTTCTTACTTCCGATCCCTCACCCTTCCCTTCTCTTCTCCTACTCCTCATCTTCACCTTCCATATCCCCAC
ATGTCGTTTCTTCTCTTACCACCATTTTCCAAGGCCTTCTCTGTACTATAACAATTGTGCTCGCCATCCTAAGGTACTCTGTAATCAGATTGCAATATCCAGTCCTAGAA
GGTTGCCTTGTGGTGGTTGGGCTTTACGAGCAGCGCCAATCGCCTTACTCGTGACGGCAAGTTGGTTGAGTCAGAAGGACTCAGCCAGAGTCGCTGCTGGGAAGTGGGGG
TCTCAGGGCTGCCGTGTTCCGACCATTTCAGAACACAAGGCAGAGGCTGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATGATACTACTACTATTCAATAT
GGCTCAACGGCAGGCTCTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTCCCATACTGCAAAAAGTCTCATCTTTTATACATCTTCTTACTTCCGATCCCTCACCCTTCCCTTCTCTTCTCCTACTCCTCATCTTCACCTTCCATATCCCCAC
ATGTCGTTTCTTCTCTTACCACCATTTTCCAAGGCCTTCTCTGTACTATAACAATTGTGCTCGCCATCCTAAGGTACTCTGTAATCAGATTGCAATATCCAGTCCTAGAA
GGTTGCCTTGTGGTGGTTGGGCTTTACGAGCAGCGCCAATCGCCTTACTCGTGACGGCAAGTTGGTTGAGTCAGAAGGACTCAGCCAGAGTCGCTGCTGGGAAGTGGGGG
TCTCAGGGCTGCCGTGTTCCGACCATTTCAGAACACAAGGCAGAGGCTGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATGATACTACTACTATTCAATAT
GGCTCAACGGCAGGCTCTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGA
Protein sequenceShow/hide protein sequence
MIPILQKVSSFIHLLTSDPSPFPSLLLLLIFTFHIPTCRFFSYHHFPRPSLYYNNCARHPKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQKDSARVAAGKWG
SQGCRVPTISEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM