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Lsi02G010080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G010080
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCASP-like protein
Genome locationchr02:10304050..10306330
RNA-Seq ExpressionLsi02G010080
SyntenyLsi02G010080
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR006459 - Casparian strip membrane protein
IPR006702 - Casparian strip membrane protein domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583816.1 CASP-like protein 1B2, partial [Cucurbita argyrosperma subsp. sororia]4.6e-3191.36Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS
        L +TTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLIS ISIIKLLHKP  S  S
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS

KAG7019442.1 CASP-like protein 1B2 [Cucurbita argyrosperma subsp. argyrosperma]1.7e-3090.12Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS
        L +TTVALASAGDGAATFMAALGKNGNKHARWNKICDKFS YCDHGAGALIASFVGLCLLLLIS ISIIKLLHKP  S  S
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS

XP_008459066.1 PREDICTED: CASP-like protein 1B2 [Cucumis melo]1.0e-3090.12Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS
        L +TTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLIS ISIIK LHK + SF S
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS

XP_022927401.1 CASP-like protein 1B2 [Cucurbita moschata]1.7e-3090.12Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS
        L +TTVALASAGDGAATFMAALGKNGNKHARWNKICDKFS YCDHGAGALIASFVGLCLLLLIS ISIIKLLHKP  S  S
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS

XP_023519194.1 CASP-like protein 1B2 [Cucurbita pepo subsp. pepo]1.0e-3090.12Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS
        L +TTVALASAGDGAATFMAALGKNGNKHARWNKICDKFS YCDHGAGALIASFVGLCLLLLIS ISIIKLLHKP  S  S
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS

TrEMBL top hitse value%identityAlignment
A0A1S3C9C0 CASP-like protein4.9e-3190.12Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS
        L +TTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLIS ISIIK LHK + SF S
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS

A0A5A7TIW7 CASP-like protein4.9e-3190.12Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS
        L +TTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLIS ISIIK LHK + SF S
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS

A0A6J1CN46 CASP-like protein2.5e-3087.8Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLL-HKPSGSFTS
        L + TVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLI VISI+K+L HKP+ SF S
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLL-HKPSGSFTS

A0A6J1EHK2 CASP-like protein8.4e-3190.12Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS
        L +TTVALASAGDGAATFMAALGKNGNKHARWNKICDKFS YCDHGAGALIASFVGLCLLLLIS ISIIKLLHKP  S  S
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS

A0A6J1KMJ6 CASP-like protein1.1e-3088.89Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS
        L +TTVALASAGDGAATFMAALGKNGNKHARWNKICDKFS YCDHGAGALIASFVGLCLLLLI+ ISIIKLLHKP  S  S
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTS

SwissProt top hitse value%identityAlignment
B9GIE4 CASP-like protein 1B25.6e-2471.25Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFT
        L + TVAL S G  AA FMA LGKNGN HARWNKICDKF T+CDHG GALIASF GL L+L+ISV+SIIKLL KP    T
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFT

B9I0U9 CASP-like protein 1B11.2e-2169.33Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKP
        L + TVAL S G  AATFMA LGKNGN HARW+KICDKF T+CDHG  ALIAS  GL L+++ISV+SI+KLL KP
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKP

B9SV63 CASP-like protein 1B19.9e-2162.2Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTSS
        L + T AL S G  AA FMA LGKNGN HA+WNKICD+F ++CDHG  A+IASF+GL L+L+IS+ISIIKLL KP      S
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPSGSFTSS

C6TG62 CASP-like protein 1B11.3e-2068.06Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLL
        L + T+ALA+ GDGAATFMA LG+NGN HARW+KICDKF  YC+ G  AL+ASFVGL LLL+++V+SI KLL
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLL

D7MFJ8 CASP-like protein 1B24.2e-1962.5Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLL
        L +    L SA   AA F+A LGKNGNKHA+WNK+CD+F+TYCDHGAGALIA+F G+ L+LL+S +SI +LL
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLL

Arabidopsis top hitse value%identityAlignment
AT1G14160.1 Uncharacterised protein family (UPF0497)2.9e-0743.84Show/hide
Query:  LVITTV--ALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKL
        LV+ TV  AL S+G  AAT    L   GN  A W  IC +F  +C+  +G+LI SF  + LL+LI + S I L
Subjt:  LVITTV--ALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKL

AT4G15610.1 Uncharacterised protein family (UPF0497)7.6e-0839.13Show/hide
Query:  VALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHK
        V + ++  GA   +A LG  GNK  RW KIC  +  +C H  GA+  S     +LLL+S+IS++ L  K
Subjt:  VALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHK

AT4G20390.1 Uncharacterised protein family (UPF0497)3.0e-2061.11Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLL
        L +    L SA   AA F+A LGKNGNKHA+WNK+CD+F+TYCDHGAGA+IA+F G+ L+LL+S +SI +LL
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLL

AT5G15290.1 Uncharacterised protein family (UPF0497)8.4e-0733.8Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKL
        L +  + L ++G  +A  +  L  NGN    W  IC +F+++C+  +G+LI SF+ + LL+L+ ++S I L
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKL

AT5G44550.1 Uncharacterised protein family (UPF0497)6.6e-2063.89Show/hide
Query:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLL
        L +  V L SA   AA FMA +GKNGNKHARW+KICD+F+TYCDHGAGALIA+F G+ L+L+IS  SI +L+
Subjt:  LVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTTTAATGTCTGAAGCAGTAGCAGCAGCAAAAGCAGATGATATTCATGTTGGTGAGTACAAGCATCTTGCAATGGCAAGAAAGAGGAATTGGGGACTTGTTAT
TACGACGGTGGCTCTTGCGTCGGCGGGAGACGGCGCAGCAACTTTCATGGCGGCACTTGGAAAGAACGGAAATAAGCATGCTAGATGGAACAAGATCTGCGACAAATTCT
CTACCTACTGCGACCATGGCGCCGGTGCGCTCATTGCTTCCTTCGTTGGCCTCTGTCTTCTTCTTCTCATCTCCGTCATCTCTATTATCAAGCTGTTGCACAAGCCGAGC
GGTTCATTCACGTCGTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTTTAATGTCTGAAGCAGTAGCAGCAGCAAAAGCAGATGATATTCATGTTGGTGAGTACAAGCATCTTGCAATGGCAAGAAAGAGGAATTGGGGACTTGTTAT
TACGACGGTGGCTCTTGCGTCGGCGGGAGACGGCGCAGCAACTTTCATGGCGGCACTTGGAAAGAACGGAAATAAGCATGCTAGATGGAACAAGATCTGCGACAAATTCT
CTACCTACTGCGACCATGGCGCCGGTGCGCTCATTGCTTCCTTCGTTGGCCTCTGTCTTCTTCTTCTCATCTCCGTCATCTCTATTATCAAGCTGTTGCACAAGCCGAGC
GGTTCATTCACGTCGTCATAA
Protein sequenceShow/hide protein sequence
MASLMSEAVAAAKADDIHVGEYKHLAMARKRNWGLVITTVALASAGDGAATFMAALGKNGNKHARWNKICDKFSTYCDHGAGALIASFVGLCLLLLISVISIIKLLHKPS
GSFTSS