CuGenDBv2

Gene ID	Lsi02G010230
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	snRNA-activating protein complex subunit-like isoform X1
Genome location	chr02:10693576..10699063
RNA-Seq Expression	Lsi02G010230
Synteny	Lsi02G010230
Gene Ontology terms	GO:0009301 - snRNA transcription (biological process) GO:0005634 - nucleus (cellular component) GO:0000987 - proximal promoter sequence-specific DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

TYK17049.1 snRNA-activating protein complex subunit-like isoform X1 [Cucumis melo var. makuwa]

4.2e-84

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Query:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL
        F+SLEAELHLDSSQLCDEDISID LK+FTEEQLLNMALEESLQSD N NNQ ELPEEN+NAG+    RNLYLEFIFTC +NLN+YGIV+L+C+KIVPAVL
Subjt:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL

Query:  EATFLAKYFLVGRIHMD-----RENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIAS
        EATFLA+Y +   I +      RE EEEVNGHNLEA PASNANRSTNKMTTRKRKKEE+S IEEKSIAKVAEIVK+KQKQ+ADRA V+LHAFKWKK+IAS
Subjt:  EATFLAKYFLVGRIHMD-----RENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIAS

Query:  SSSESKERLRSLRSTNSSAKV
        SSSESKERL+SLRSTNSSAKV
Subjt:  SSSESKERLRSLRSTNSSAKV

TYK29378.1 snRNA-activating protein complex subunit-like isoform X3 [Cucumis melo var. makuwa]

4.2e-84

80.09

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Query:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL
        F+SLEAELHLDSSQLCDEDISID LK+FTEEQLLNMALEESLQSDEN NNQ ELPEEN+NAG+ SK RNLYLEFIF C +NLN+YGIV+ +C+KIVPAVL
Subjt:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL

Query:  EATFLAKYFLVGRIHMD-----RENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIAS
        EATFLA+  +   I +      RE EEEVNGHNLEA PASNANRSTNKMTTRKRKKEE+S IEEKSIAKVAEI K+KQKQ+ADRA V+LHAFKWKK+IAS
Subjt:  EATFLAKYFLVGRIHMD-----RENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIAS

Query:  SSSESKERLRSLRSTNSSAKV
        SSSESKERL+SLRSTN+SAKV
Subjt:  SSSESKERLRSLRSTNSSAKV

XP_008459093.1 PREDICTED: snRNA-activating protein complex subunit-like isoform X1 [Cucumis melo]

2.0e-62

68.04

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Query:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL
        F+SLEAELHLDSSQLCDEDISID LK+FTEEQLLNMALEESLQSDEN NNQ ELPEEN+NAG+                    +  ++ LR   I+    
Subjt:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL

Query:  EATFLAKYFLVGRIHMDRENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIASSSSES
                         RE EEEVNGHNLEA PASNANRSTNKMTTRKRKKEE+S IEEKSIAKVAEI K+KQKQ+ADRA V+LHAFKWKK+IASSSSES
Subjt:  EATFLAKYFLVGRIHMDRENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIASSSSES

Query:  KERLRSLRSTNSSAKVPHV
        KERL+SLRSTN+SAKVPHV
Subjt:  KERLRSLRSTNSSAKVPHV

XP_008459095.1 PREDICTED: snRNA-activating protein complex subunit-like isoform X3 [Cucumis melo]

2.0e-62

68.04

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Query:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL
        F+SLEAELHLDSSQLCDEDISID LK+FTEEQLLNMALEESLQSDEN NNQ ELPEEN+NAG+                    +  ++ LR   I+    
Subjt:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL

Query:  EATFLAKYFLVGRIHMDRENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIASSSSES
                         RE EEEVNGHNLEA PASNANRSTNKMTTRKRKKEE+S IEEKSIAKVAEI K+KQKQ+ADRA V+LHAFKWKK+IASSSSES
Subjt:  EATFLAKYFLVGRIHMDRENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIASSSSES

Query:  KERLRSLRSTNSSAKVPHV
        KERL+SLRSTN+SAKVPHV
Subjt:  KERLRSLRSTNSSAKVPHV

XP_016901523.1 PREDICTED: snRNA-activating protein complex subunit-like [Cucumis melo]

6.5e-61

67.12

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Query:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL
        F+SLEAELHLDSSQLCDEDISID LK+FTEEQLLNMALEESLQSD N NNQ ELPEEN+NAG+                                     
Subjt:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL

Query:  EATFLAKYFLVGRIHMDRENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIASSSSES
                         RE EEEVNGHNLEA PASNANRSTNKMTTRKRKKEE+S IEEKSIAKVAEIVK+KQKQ+ADRA V+LHAFKWKK+IASSSSES
Subjt:  EATFLAKYFLVGRIHMDRENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIASSSSES

Query:  KERLRSLRSTNSSAKVPHV
        KERL+SLRSTNSSAKVPHV
Subjt:  KERLRSLRSTNSSAKVPHV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C9H5 snRNA-activating protein complex subunit-like isoform X1

9.8e-63

68.04

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Query:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL
        F+SLEAELHLDSSQLCDEDISID LK+FTEEQLLNMALEESLQSDEN NNQ ELPEEN+NAG+                    +  ++ LR   I+    
Subjt:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL

Query:  EATFLAKYFLVGRIHMDRENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIASSSSES
                         RE EEEVNGHNLEA PASNANRSTNKMTTRKRKKEE+S IEEKSIAKVAEI K+KQKQ+ADRA V+LHAFKWKK+IASSSSES
Subjt:  EATFLAKYFLVGRIHMDRENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIASSSSES

Query:  KERLRSLRSTNSSAKVPHV
        KERL+SLRSTN+SAKVPHV
Subjt:  KERLRSLRSTNSSAKVPHV

A0A1S3CAL2 snRNA-activating protein complex subunit-like isoform X3

9.8e-63

68.04

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Query:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL
        F+SLEAELHLDSSQLCDEDISID LK+FTEEQLLNMALEESLQSDEN NNQ ELPEEN+NAG+                    +  ++ LR   I+    
Subjt:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL

Query:  EATFLAKYFLVGRIHMDRENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIASSSSES
                         RE EEEVNGHNLEA PASNANRSTNKMTTRKRKKEE+S IEEKSIAKVAEI K+KQKQ+ADRA V+LHAFKWKK+IASSSSES
Subjt:  EATFLAKYFLVGRIHMDRENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIASSSSES

Query:  KERLRSLRSTNSSAKVPHV
        KERL+SLRSTN+SAKVPHV
Subjt:  KERLRSLRSTNSSAKVPHV

A0A1S4DZX0 snRNA-activating protein complex subunit-like

3.2e-61

67.12

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Query:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL
        F+SLEAELHLDSSQLCDEDISID LK+FTEEQLLNMALEESLQSD N NNQ ELPEEN+NAG+                                     
Subjt:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL

Query:  EATFLAKYFLVGRIHMDRENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIASSSSES
                         RE EEEVNGHNLEA PASNANRSTNKMTTRKRKKEE+S IEEKSIAKVAEIVK+KQKQ+ADRA V+LHAFKWKK+IASSSSES
Subjt:  EATFLAKYFLVGRIHMDRENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIASSSSES

Query:  KERLRSLRSTNSSAKVPHV
        KERL+SLRSTNSSAKVPHV
Subjt:  KERLRSLRSTNSSAKVPHV

A0A5D3D338 snRNA-activating protein complex subunit-like isoform X1

2.0e-84

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Query:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL
        F+SLEAELHLDSSQLCDEDISID LK+FTEEQLLNMALEESLQSD N NNQ ELPEEN+NAG+    RNLYLEFIFTC +NLN+YGIV+L+C+KIVPAVL
Subjt:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL

Query:  EATFLAKYFLVGRIHMD-----RENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIAS
        EATFLA+Y +   I +      RE EEEVNGHNLEA PASNANRSTNKMTTRKRKKEE+S IEEKSIAKVAEIVK+KQKQ+ADRA V+LHAFKWKK+IAS
Subjt:  EATFLAKYFLVGRIHMD-----RENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIAS

Query:  SSSESKERLRSLRSTNSSAKV
        SSSESKERL+SLRSTNSSAKV
Subjt:  SSSESKERLRSLRSTNSSAKV

A0A5D3E0W6 snRNA-activating protein complex subunit-like isoform X3

2.0e-84

80.09

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Query:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL
        F+SLEAELHLDSSQLCDEDISID LK+FTEEQLLNMALEESLQSDEN NNQ ELPEEN+NAG+ SK RNLYLEFIF C +NLN+YGIV+ +C+KIVPAVL
Subjt:  FESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAVL

Query:  EATFLAKYFLVGRIHMD-----RENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIAS
        EATFLA+  +   I +      RE EEEVNGHNLEA PASNANRSTNKMTTRKRKKEE+S IEEKSIAKVAEI K+KQKQ+ADRA V+LHAFKWKK+IAS
Subjt:  EATFLAKYFLVGRIHMD-----RENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIAS

Query:  SSSESKERLRSLRSTNSSAKV
        SSSESKERL+SLRSTN+SAKV
Subjt:  SSSESKERLRSLRSTNSSAKV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTTCGGCCTAAAACAATTTACCCACGTTGTTTCGAGAGTCTGGAGGCAGAGTTACACTTGGATTCATCTCAACTATGCGATGAAGATATTTCGATTGATGGGCTTAA
GGTGTTTACTGAAGAACAGTTATTGAATATGGCTTTGGAGGAATCATTGCAGAGTGATGAGAATGGTAATAACCAGCCAGAACTTCCAGAAGAAAATTTGAATGCTGGGG
TGGCAAGCAAAGGAAGGAACCTCTATTTAGAATTCATCTTTACTTGCTGTGACAACCTCAACATCTATGGTATTGTGAAGCTAAGATGTCAGAAGATAGTTCCTGCGGTT
CTAGAAGCAACCTTCCTTGCAAAGTACTTTTTGGTGGGTAGAATCCATATGGATAGAGAAAATGAGGAGGAAGTTAACGGGCACAATTTGGAGGCTGCTCCTGCATCAAA
TGCAAATAGAAGCACGAATAAAATGACTACAAGGAAGCGAAAAAAGGAGGAAATTTCTAATATTGAGGAAAAGTCTATTGCAAAGGTGGCTGAAATTGTAAAGATTAAAC
AAAAGCAGGATGCAGACAGAGCTGCAGTGAAATTACATGCTTTCAAGTGGAAGAAGGAAATTGCCAGTTCATCGTCAGAAAGCAAAGAGAGGTTGAGATCCTTGAGGTCT
ACAAATTCTTCTGCAAAGGTTCCTCATGTAGGGTTTCTCTGA

mRNA sequence

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Protein sequence

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MFRPKTIYPRCFESLEAELHLDSSQLCDEDISIDGLKVFTEEQLLNMALEESLQSDENGNNQPELPEENLNAGVASKGRNLYLEFIFTCCDNLNIYGIVKLRCQKIVPAV
LEATFLAKYFLVGRIHMDRENEEEVNGHNLEAAPASNANRSTNKMTTRKRKKEEISNIEEKSIAKVAEIVKIKQKQDADRAAVKLHAFKWKKEIASSSSESKERLRSLRS
TNSSAKVPHVGFL

Lsi02G010230 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome