CuGenDBv2

Gene ID	Lsi02G010340
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	ribonuclease H2 subunit C
Genome location	chr02:10930130..10933595
RNA-Seq Expression	Lsi02G010340
Synteny	Lsi02G010340
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domains	IPR013924 - Ribonuclease H2, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-77

86.75

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Query:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDS
        M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKSTGIEVDGLSVE AYFRGRKLQGATISLPEGYSGYV+G+KS GKR+ S
Subjt:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDS

Query:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
        E+ QDSS WQVKAKFENITYWNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA+AS ALKNMS
Subjt:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]

2.1e-77

86.75

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Query:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDS
        M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKSTGIEVDGLSVE AYFRGRKLQGATISLPEGYSGYV+G+KS GKR+ S
Subjt:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDS

Query:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
        E+ QDSS WQVKAKFENITYWNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA+AS ALKNMS
Subjt:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

XP_023001622.1 uncharacterized protein C12B10.15c [Cucurbita maxima]

7.9e-77

86.14

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Query:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDS
        M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKSTGIEVDGLSV+ AYFRGRKLQGATISLPEGY GYV+G+KSL KR+ S
Subjt:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDS

Query:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
        E+ QDSS WQVKAKFENITYWNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA ASTALKNMS
Subjt:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

XP_023519278.1 uncharacterized protein C12B10.15c [Cucurbita pepo subsp. pepo]

4.6e-77

86.14

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Query:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDS
        M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKSTGIEVDGLSVE AYFRGRKLQGATISLPEGYSGYV+G+KS GKR+ S
Subjt:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDS

Query:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
        E+ QDSS WQVKAKFENITYWNHDTLP+QDDTF RSFHWLTVA+ALHKP TAEDLA+ASTALKNMS
Subjt:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]

3.7e-82

93.37

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Query:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDS
        MNAE ERKGEVIVDFDF  DSV LDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIE DGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKR+ S
Subjt:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDS

Query:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
        EQ Q+SSPWQVKAKF NITYWNHDTLPSQDDTFQRSFHWLTVA+ALHKPVTAEDLASASTALKNMS
Subjt:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M1A2 Uncharacterized protein

1.0e-74

84.52

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Query:  MNAEIERKGEVIV--DFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKRE
        MN + ERKGEVIV  DFDFG D   LD+SGKVHQLPC IKFDGPC VS YFKPKSTGIEVDGL++EEAYFRGRKLQGATISLPEGYSGYVLGKKS    +
Subjt:  MNAEIERKGEVIV--DFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKRE

Query:  DSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
         SEQC DSSPWQVKAKF+NITYWNHDTLPSQDDTFQR+FHWLTVA+ALHKPVTAEDLASASTALKN+S
Subjt:  DSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

A0A1S3C9A8 uncharacterized protein C12B10.15c

5.5e-76

83.93

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Query:  MNAEIERKGEVIV--DFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKRE
        MNA+  RKGE  V  DFDFG D   LDLSGK+HQLPC IKFDGPC VS YFKPKSTGIEVDGL+VEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGK +
Subjt:  MNAEIERKGEVIV--DFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKRE

Query:  DSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
         S+QC DSSPWQVKAKF+NITYWNHDTLPSQDDTFQR+FHWLTVA+ALHKPVTAEDLASAS AL N+S
Subjt:  DSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X2

5.5e-76

83.93

Show/hide

Query:  MNAEIERKGEVIV--DFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKRE
        MNA+  RKGE  V  DFDFG D   LDLSGK+HQLPC IKFDGPC VS YFKPKSTGIEVDGL+VEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGK +
Subjt:  MNAEIERKGEVIV--DFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKRE

Query:  DSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
         S+QC DSSPWQVKAKF+NITYWNHDTLPSQDDTFQR+FHWLTVA+ALHKPVTAEDLASAS AL N+S
Subjt:  DSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

A0A6J1EN41 uncharacterized protein C12B10.15c

1.0e-77

86.75

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Query:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDS
        M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKSTGIEVDGLSVE AYFRGRKLQGATISLPEGYSGYV+G+KS GKR+ S
Subjt:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDS

Query:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
        E+ QDSS WQVKAKFENITYWNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA+AS ALKNMS
Subjt:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

A0A6J1KH29 uncharacterized protein C12B10.15c

3.8e-77

86.14

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Query:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDS
        M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKSTGIEVDGLSV+ AYFRGRKLQGATISLPEGY GYV+G+KSL KR+ S
Subjt:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDS

Query:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
        E+ QDSS WQVKAKFENITYWNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA ASTALKNMS
Subjt:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

SwissProt top hits

e value

%identity

Alignment

Q10448 Uncharacterized protein C12B10.15c

5.1e-10

35.59

Show/hide

Query:  KVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSG-YVLGKKSLGKREDSEQCQDSSPWQVKAKFENITYWNHDTL-
        K   LPC I +DGP  V +YF  K   I  +  S      RGR+L G  + LPE Y+G  VL    L   E SE+    S W + + FE +  WN D + 
Subjt:  KVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSG-YVLGKKSLGKREDSEQCQDSSPWQVKAKFENITYWNHDTL-

Query:  PSQDDTFQRS-FHWLTVA
         S+ D ++R    W+  A
Subjt:  PSQDDTFQRS-FHWLTVA

Arabidopsis top hits

e value

%identity

Alignment

AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

7.9e-51

60.51

Show/hide

Query:  VDFDFGIDSVPL-DLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKS----LGKREDSEQCQDSS
        +DF    D   + DLS +VHQLPC I+FDGP  VS YFKPKS+ +E+DG+  EEA+FRGRKLQGATISLP GYSG+VL + S     GKR+ S   +D+ 
Subjt:  VDFDFGIDSVPL-DLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKS----LGKREDSEQCQDSS

Query:  PWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKN
         W+VKAKF N+TYWNHD+LPS+DDTF RSFHW ++A+ALHKPV  EDL + S   KN
Subjt:  PWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKN

Sequences

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CDS sequence

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ATGAATGCTGAAATCGAGAGGAAAGGGGAAGTAATCGTGGATTTTGATTTTGGGATTGACTCTGTGCCTTTGGATCTCAGTGGTAAAGTCCATCAGCTTCCCTGTGCCAT
TAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAGTGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGC
AGGGAGCAACCATTTCCCTTCCTGAGGGTTACTCTGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGGGAAGATTCTGAACAGTGTCAGGACTCAAGCCCTTGGCAG
GTGAAGGCCAAATTTGAAAATATTACATATTGGAACCATGACACCCTACCATCACAAGACGATACGTTCCAACGTTCTTTTCACTGGCTGACCGTTGCAAAAGCATTGCA
CAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGA

mRNA sequence

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AAAAACTCGAGACCAAATGTATATTTTTCATAATAAGTAAATAAATAATAATAATAGAAAAACGAATTTCGAGCGGGAAAATCTTGGTCGAGGATCGATTCTCATTTCTC
AATGCTCAAAAGAGCGGGAAGCGTAGAATCTGAAGTAGAAATGGTCGACTGAATTTCCTCGCCAGAAATCCGAAGCATCAACGTGGGTTTAGGGTTTTTGAGTTTGGGGT
TGCTTCACAAATCACAATTAATCAAATGAATGCTGAAATCGAGAGGAAAGGGGAAGTAATCGTGGATTTTGATTTTGGGATTGACTCTGTGCCTTTGGATCTCAGTGGTA
AAGTCCATCAGCTTCCCTGTGCCATTAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAGTGTTGAGGAA
GCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCAACCATTTCCCTTCCTGAGGGTTACTCTGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGGGAAGATTCTGAACA
GTGTCAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAAAATATTACATATTGGAACCATGACACCCTACCATCACAAGACGATACGTTCCAACGTTCTTTTCACT
GGCTGACCGTTGCAAAAGCATTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGATTAGGATCATGTGCTCTGAGAAGA
AAACTTCTAAAACTAGAATGATTCCATACTACTTTGAATTTTTATTATTATCTATTTTACCAATTTATTTAATGGGTTTAGCATTTTAAATCATGATGTGGCTTTTTTTA
TTTATTACAGTAGTATAAAAGAATGTCCTACAAGATTAGTATTGGAAATATGATTTTCATTTTGTTTGTCATTTAACTTGAGTTGTTCAATAAAACTAATATTTATAAAA
TACAAGAGCAGGCTTACATTGTAAGCCCTAAGCGTTC

Protein sequence

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MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDSEQCQDSSPWQ
VKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

Lsi02G010340 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome