| GenBank top hits | e value | %identity | Alignment |
|---|
| EOY30724.1 Eukaryotic rpb5 RNA polymerase subunit family protein isoform 2, partial [Theobroma cacao] | 2.2e-59 | 81.51 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
MVLS++EI RLFR+RKTV+QMLKDRGYFVGDFE+ M++ QF K+GE+MKREDLVINK+ RN++SDQE+EL+VN+K H L+PEH LTNEEKKTLL+RYT
Subjt: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
Query: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| ESR64457.1 hypothetical protein CICLE_v10009504mg [Citrus clementina] | 1.6e-60 | 83.56 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
M LS+EEI RLFR+R+TV+QML+DRGYFVGDFE++MS+ QF KFGE+MKREDLVINK++RN+SSDQEAEL+VNIK HVL+PEH LTNEEKKTLL+RYT
Subjt: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
Query: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
VKETQLPRIQV+DPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| KAF3965687.1 hypothetical protein CMV_010147 [Castanea mollissima] | 1.3e-59 | 82.88 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
MV+SE+E RLFR+RKTV+QMLKDRGY V DFE+DM++ QF+ K+GESMKREDLVINK+ R +SSDQEAELMVNIK HVL+PEH LT EEKKTLLERYT
Subjt: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
Query: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
VKETQLPRIQV+DPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| KAG7025474.1 DNA-directed RNA polymerases II and IV subunit 5A [Cucurbita argyrosperma subsp. argyrosperma] | 3.0e-64 | 88.36 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
MVL+EEEITRLFRVRKTVLQMLKDRGYFVGDFE+DMSR QFK+K+GESMKRED+VINK+ RN+SSDQEAEL+VNIK+HVL+PEH L+NEEKKTLLERYT
Subjt: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
Query: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
VKETQLPRIQV+DP+ARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| XP_007013105.2 PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A isoform X2 [Theobroma cacao] | 2.2e-59 | 81.51 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
MVLS++EI RLFR+RKTV+QMLKDRGYFVGDFE+ M++ QF K+GE+MKREDLVINK+ RN++SDQE+EL+VN+K H L+PEH LTNEEKKTLL+RYT
Subjt: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
Query: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A061GUE1 Eukaryotic rpb5 RNA polymerase subunit family protein isoform 2 (Fragment) | 1.1e-59 | 81.51 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
MVLS++EI RLFR+RKTV+QMLKDRGYFVGDFE+ M++ QF K+GE+MKREDLVINK+ RN++SDQE+EL+VN+K H L+PEH LTNEEKKTLL+RYT
Subjt: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
Query: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| A0A103XVR6 DNA-directed RNA polymerase, RPB5 subunit (Fragment) | 2.3e-57 | 78.08 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
M LSEEEI+RLFR+R+TV+QML+DRGY VG+FE++M RG F K+GE+MKREDL+I+K+ N+SSDQEAEL+VN+K+H+L+PEH LT EEKKTLL RYT
Subjt: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
Query: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
VKETQLPRIQVSDPIARYYGLKRGQV+KIIRPSETAGRYVTYRYVV
Subjt: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| A0A6J1GQK9 DNA-directed RNA polymerases II and IV subunit 5A-like | 1.0e-57 | 63.11 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSD----------------------------------
MVLSEEEITRLFR+RKTVLQMLKDRGYFVGDFE+DMSR QFKHK+GESMKRED+VINK+ RN+SSD
Subjt: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSD----------------------------------
Query: --------------------------QEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYV
QEAEL+VN+K+HVL+PEH LTNEEKKTLLERYTVKETQLPRIQV+DP+ARYYGLKRGQVVKIIRPSETAGRYV
Subjt: --------------------------QEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYV
Query: TYRYVV
TYRYVV
Subjt: TYRYVV
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| A0A6J1JRV4 DNA-directed RNA polymerases II and IV subunit 5A-like | 7.8e-58 | 63.11 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSD----------------------------------
MVLSEEEITRLFR+RKTVLQMLKDRGYFVGDFE+DMSR QFKHK+GESMKRED+VINK+ RN+SSD
Subjt: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSD----------------------------------
Query: --------------------------QEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYV
QEAEL+VN+K+HVL+PEH LTNEEKKTLLERYTVKETQLPRIQV+DP+ARYYGLKRGQVVKIIRPSETAGRYV
Subjt: --------------------------QEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYV
Query: TYRYVV
TYRYVV
Subjt: TYRYVV
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| V4UEF9 Uncharacterized protein | 7.5e-61 | 83.56 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
M LS+EEI RLFR+R+TV+QML+DRGYFVGDFE++MS+ QF KFGE+MKREDLVINK++RN+SSDQEAEL+VNIK HVL+PEH LTNEEKKTLL+RYT
Subjt: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYT
Query: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
VKETQLPRIQV+DPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: VKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| A8XGH1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.7e-30 | 42.18 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGE-----SMKREDLVINKSMRNNSSDQ----------------------------
M E E RL+R+RKTVLQM+ DRGY V ELD FK FG+ R DL I + ++ +DQ
Subjt: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGE-----SMKREDLVINKSMRNNSSDQ----------------------------
Query: --------------------------------EAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSET
EAELMVNI H L+PEHV +T EEK LL RY +K++QLPRIQ DP+ARY+GL+RGQVVKIIRPSET
Subjt: --------------------------------EAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSET
Query: AGRYVTYRYVV
AGRY+TYR VV
Subjt: AGRYVTYRYVV
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| B0BNE2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 9.6e-29 | 37.86 | Show/hide |
Query: EEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGES-----MKREDLVINKSMRNNSSDQ--------------------------------
EEE RL+++RKT++Q+ DRGY V ELD + +FK +FG+ +R DL + + ++ +DQ
Subjt: EEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGES-----MKREDLVINKSMRNNSSDQ--------------------------------
Query: ----------------------------EAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRY
+ EL++NI H L+PEHV +T EE LL RY ++E+QLPRIQ DP+ARY+G+KRGQVVKIIRPSETAGRY
Subjt: ----------------------------EAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRY
Query: VTYRYV
+TYR V
Subjt: VTYRYV
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| O81098 DNA-directed RNA polymerases II and IV subunit 5A | 2.0e-47 | 52.68 | Show/hide |
Query: VLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSD-----------------------------------
+L+EEE+ RL+R++KT++QML+DRGYF+ D EL M++ QF K G++MKREDLV K+ RN++SD
Subjt: VLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSD-----------------------------------
Query: -------------------------QEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVT
QEAE++VNIK HVL+PEH LT EEKKTLLERYTVKETQLPRIQV+DPIARY+GLKRGQVVKIIRPSETAGRYVT
Subjt: -------------------------QEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVT
Query: YRYVV
YRYVV
Subjt: YRYVV
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| Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 9.6e-29 | 37.86 | Show/hide |
Query: EEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGES-----MKREDLVINKSMRNNSSDQ--------------------------------
EEE RL+++RKT++Q+ DRGY V ELD + +FK +FG+ +R DL + + ++ +DQ
Subjt: EEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGES-----MKREDLVINKSMRNNSSDQ--------------------------------
Query: ----------------------------EAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRY
+ EL++NI H L+PEHV +T EE LL RY ++E+QLPRIQ DP+ARY+G+KRGQVVKIIRPSETAGRY
Subjt: ----------------------------EAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRY
Query: VTYRYV
+TYR V
Subjt: VTYRYV
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| Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 5.1e-30 | 41.71 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGE-----SMKREDLVINKSMRNNSSDQ----------------------------
M E E RL+R+RKTVLQM+ DRGY V ELD FK ++G+ R DL I + ++ +DQ
Subjt: MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGE-----SMKREDLVINKSMRNNSSDQ----------------------------
Query: --------------------------------EAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSET
EAELMVNI H L+PEHV +T EEK LL RY +K++QLPRIQ DP+ARY+GL+RGQVVKIIRPSET
Subjt: --------------------------------EAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSET
Query: AGRYVTYRYVV
AGRY+TYR VV
Subjt: AGRYVTYRYVV
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 1.3e-17 | 30.35 | Show/hide |
Query: SEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQF-----------------KHKFGESMK-------------------------RED-----LVI
S E + + R+T ++ML+DRGY V D ++++S QF KH+F S K RE+ LV+
Subjt: SEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQF-----------------KHKFGESMK-------------------------RED-----LVI
Query: NKSMRNNSSD------------QEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRY
+ N + + +L+VN+ HVL P+H L ++EK++LL++++++E QLPR+ DPI RYYGL+ GQV+K+ E + +VTYR
Subjt: NKSMRNNSSD------------QEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRY
Query: V
V
Subjt: V
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| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 1.5e-48 | 52.68 | Show/hide |
Query: VLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSD-----------------------------------
+L+EEE+ RL+R++KT++QML+DRGYF+ D EL M++ QF K G++MKREDLV K+ RN++SD
Subjt: VLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSD-----------------------------------
Query: -------------------------QEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVT
QEAE++VNIK HVL+PEH LT EEKKTLLERYTVKETQLPRIQV+DPIARY+GLKRGQVVKIIRPSETAGRYVT
Subjt: -------------------------QEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVT
Query: YRYVV
YRYVV
Subjt: YRYVV
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| AT3G54490.1 RNA polymerase II fifth largest subunit, E | 4.0e-14 | 29.15 | Show/hide |
Query: EITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRN--------------------------------------------
E R + R T +ML+DRGY V + EL ++ +F+ FGE + E L I +R+
Subjt: EITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRN--------------------------------------------
Query: -NSSDQEA--------------ELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
N Q+A +L+VNI H+ P+ L EEK+ LL ++ +++ QLP +Q D RYYGLK+ QVVKI E G +VTYR ++
Subjt: -NSSDQEA--------------ELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 8.6e-17 | 30.69 | Show/hide |
Query: LSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSD------------------------------------
LS EE R + R+ LQML+DRGY V D ++++S F+ +GE + L I+ R++S+
Subjt: LSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSD------------------------------------
Query: -----------------------QEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYR
Q +L+VNI H L P+H L +EEK TLL++++++E QLPRI D I RYYGL++GQVVK+ E +V +R
Subjt: -----------------------QEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYR
Query: YV
V
Subjt: YV
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| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 1.9e-24 | 34.95 | Show/hide |
Query: EEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESM---KREDLVINKSMRNNSSD-----------------------------------
++EITR+F+VR+TVLQML+DRGY + + +L++ R +F +F ++M +E L ++ + N +D
Subjt: EEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESM---KREDLVINKSMRNNSSD-----------------------------------
Query: --------------------------QEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYV
+EAEL+ NI H L+ ++ L ++ KK LL YTV++TQLPRI V+DP+ARYYGLKRGQVVKI R T+ Y
Subjt: --------------------------QEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYV
Query: TYRYVV
TYR+ V
Subjt: TYRYVV
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