CuGenDBv2

Gene ID	Lsi02G010640
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	50S ribosomal protein L23, chloroplastic
Genome location	chr02:11596167..11596432
RNA-Seq Expression	Lsi02G010640
Synteny	Lsi02G010640
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

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GenBank top hits

e value

%identity

Alignment

AGS12721.1 ribosomal protein L23 [Bergia texana]

4.1e-26

93.55

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

QFO48388.1 ribosomal protein L23 [Manihot esculenta]

4.1e-26

93.55

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

YP_004327704.1 ribosomal protein L23 [Hevea brasiliensis]

4.1e-26

93.55

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

YP_009028012.1 ribosomal protein L23 [Chrysobalanus icaco]

4.1e-26

93.55

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

YP_009327717.1 ribosomal protein L23 [Idesia polycarpa]

4.1e-26

93.55

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

TrEMBL top hits

e value

%identity

Alignment

A0A023T232 50S ribosomal protein L23, chloroplastic

2.0e-26

93.55

Show/hide

Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

A0A191VW81 50S ribosomal protein L23, chloroplastic

2.0e-26

93.55

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

A0A191VXH1 50S ribosomal protein L23, chloroplastic

2.0e-26

93.55

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

A0A5Q0RYB6 50S ribosomal protein L23, chloroplastic

2.0e-26

93.55

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

A0A7G9M897 50S ribosomal protein L23, chloroplastic

2.0e-26

93.55

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

SwissProt top hits

e value

%identity

Alignment

A0A378 50S ribosomal protein L23, chloroplastic

3.5e-28

91.94

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGKGRRM PIMGHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

Q06R67 50S ribosomal protein L23, chloroplastic

3.5e-28

91.94

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGKGRRM PIMGHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

Q09FP7 50S ribosomal protein L23, chloroplastic

3.5e-28

91.94

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGKGRRM PIMGHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

Q14F96 50S ribosomal protein L23, chloroplastic

5.4e-29

93.55

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

Q4VZK6 50S ribosomal protein L23, chloroplastic

3.5e-28

91.94

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGKGRRM PIMGHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00840.1 ribosomal protein L23.1

1.4e-27

87.1

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGK +RM PI+GHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

ATCG01300.1 ribosomal protein L23

1.4e-27

87.1

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Query:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
        +TEIKHWVELFFGVKVIAMNSHR PGK +RM PI+GHTMHYR MIITLQPGYSIPPLRKK+T
Subjt:  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

Sequences

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CDS sequence

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ATGCAGACAGAAATAAAACATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGATTCCCGGGAAAGGGTAGAAGAATGAGACCTATTATGGG
ACATACAATGCATTACAGATGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAAAACTTAA

mRNA sequence

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ATGCAGACAGAAATAAAACATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGATTCCCGGGAAAGGGTAGAAGAATGAGACCTATTATGGG
ACATACAATGCATTACAGATGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAAAACTTAA

Protein sequence

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MQTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT

Lsi02G010640 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome