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Lsi02G011010 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G011010
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionER membrane protein complex subunit 3
Genome locationchr02:12541240..12542722
RNA-Seq ExpressionLsi02G011010
SyntenyLsi02G011010
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139548.1 ER membrane protein complex subunit 3 [Cucumis sativus]1.4e-09100Show/hide
Query:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
        GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
Subjt:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
XP_008458952.1 PREDICTED: ER membrane protein complex subunit 3 [Cucumis melo]1.4e-09100Show/hide
Query:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
        GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
Subjt:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
XP_022927570.1 ER membrane protein complex subunit 3 [Cucurbita moschata]1.8e-0997.06Show/hide
Query:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
        GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKI+S
Subjt:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
XP_023001598.1 ER membrane protein complex subunit 3 [Cucurbita maxima]1.4e-09100Show/hide
Query:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
        GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
Subjt:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
XP_038894845.1 ER membrane protein complex subunit 3 [Benincasa hispida]1.4e-09100Show/hide
Query:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
        GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
Subjt:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
TrEMBL top hitse value%identityAlignment
A0A1S3C924 ER membrane protein complex subunit 36.6e-10100Show/hide
Query:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
        GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
Subjt:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
A0A6J1CLR8 ER membrane protein complex subunit 31.9e-0997.06Show/hide
Query:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
        GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRK VS
Subjt:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
A0A6J1EPC4 ER membrane protein complex subunit 38.7e-1097.06Show/hide
Query:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
        GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKI+S
Subjt:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
A0A6J1KQZ7 ER membrane protein complex subunit 36.6e-10100Show/hide
Query:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
        GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
Subjt:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
A0A6P3ZIZ3 ER membrane protein complex subunit 34.8e-0890.91Show/hide
Query:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIV
        GLSAEKD+LDIVQHEW LPKFEHRAEAVLRK+V
Subjt:  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G12590.1 Protein of unknown function DUF106, transmembrane9.5e-0975Show/hide
Query:  LSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIV
        L AEKD LDI+QHEW LP+FE RAE+VLRK+V
Subjt:  LSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTGCTCGAACCGATTATCCGATGGTTTAATCGGCTTGGTCTTGCAGTTCACTGGCTCCAACCCAAGTCAGTGGCTATACCATGCTGAGAATATTGCCAATAGACT
GCATGGTTTGAGTGCCGAGAAAGACAACTTAGACATAGTGCAACATGAATGGGTCTTGCCCAAGTTCGAGCATCGTGCTGAAGCTGTGTTGAGAAAGATTGTCAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACTGCTCGAACCGATTATCCGATGGTTTAATCGGCTTGGTCTTGCAGTTCACTGGCTCCAACCCAAGTCAGTGGCTATACCATGCTGAGAATATTGCCAATAGACT
GCATGGTTTGAGTGCCGAGAAAGACAACTTAGACATAGTGCAACATGAATGGGTCTTGCCCAAGTTCGAGCATCGTGCTGAAGCTGTGTTGAGAAAGATTGTCAGCTGAT
CGGTTTCTGGCTCACAGGTCCTCTACTAGTATATTTTCTATGGTTATTACGACTTAGGTACTTTTTTTTGGGGATTGTTGTGAAACATAGAAATCTGTTTTTATCAACCA
TGGATATTGTAACATTAAATTATTTTTAGTCAACTAATAACAGTTTGGATCTTTCCAAGTCATGTACATCAACTTTTATAAAAGGATACCGTTAAAGATGGAATGCAATG
ATGATGTTGAACATCTCTTGGAAGGCA
Protein sequenceShow/hide protein sequence
MNCSNRLSDGLIGLVLQFTGSNPSQWLYHAENIANRLHGLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS