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Lsi02G011100 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G011100
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMitochondrial import inner membrane translocase subunit tim16
Genome locationchr02:12800979..12806740
RNA-Seq ExpressionLsi02G011100
SyntenyLsi02G011100
Gene Ontology termsGO:0030150 - protein import into mitochondrial matrix (biological process)
GO:0005744 - TIM23 mitochondrial import inner membrane translocase complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR005341 - Mitochondrial import inner membrane translocase subunit Tim16
IPR036869 - Chaperone J-domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035623.1 mitochondrial import inner membrane translocase subunit tim16 [Cucumis melo var. makuwa]1.3e-5790.58Show/hide
Query:  TSIFSSSGFNDSGPVIKASQLIMAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYD
        +SI SSSGFNDSG V++AS LIMAAKILANLIVMGSGILARAFVQAYRQAL NASKSGVAQET+QNTVRRASKVMTEQEARQILGVTEE PWEEVVKKYD
Subjt:  TSIFSSSGFNDSGPVIKASQLIMAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYD

Query:  TLFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS
         LFE+NAQTGSFYLQSKVHRAKERLETLYQ+KG+DAPS
Subjt:  TLFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS

KAG6592401.1 Mitochondrial import inner membrane translocase subunit PAM16 like 2, partial [Cucurbita argyrosperma subsp. sororia]9.5e-5693.89Show/hide
Query:  IFSSSGFNDSGPVIKASQLIMAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTL
        I SSSG ND GPVI+ASQLIMAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVT E PWEE+VKKYD L
Subjt:  IFSSSGFNDSGPVIKASQLIMAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTL

Query:  FEKNAQTGSFYLQSKVHRAKERLETLYQSKG
        FEKNAQTGSFYLQSKVHRAKERLETLYQSKG
Subjt:  FEKNAQTGSFYLQSKVHRAKERLETLYQSKG

KAG7011201.1 Mitochondrial import inner membrane translocase subunit PAM16 like 2, partial [Cucurbita argyrosperma subsp. argyrosperma]6.0e-5094.83Show/hide
Query:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK
        MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVT E PWEE+VKKYD LFE+NAQTGSFYLQSKVHRAK
Subjt:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK

Query:  ERLETLYQSKGEDAPS
        ERLETLYQSKG+DAPS
Subjt:  ERLETLYQSKGEDAPS

XP_022925423.1 mitochondrial import inner membrane translocase subunit PAM16 like 2-like [Cucurbita moschata]2.7e-5095.69Show/hide
Query:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK
        MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVT E PWEE+VKKYD LFEKNAQTGSFYLQSKVHRAK
Subjt:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK

Query:  ERLETLYQSKGEDAPS
        ERLETLYQSKG+DAPS
Subjt:  ERLETLYQSKGEDAPS

XP_023535168.1 mitochondrial import inner membrane translocase subunit PAM16 like 2-like [Cucurbita pepo subsp. pepo]3.5e-5095.69Show/hide
Query:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK
        MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGV+ E PWEE+VKKYD LFEKNAQTGSFYLQSKVHRAK
Subjt:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK

Query:  ERLETLYQSKGEDAPS
        ERLETLYQSKGEDAPS
Subjt:  ERLETLYQSKGEDAPS

TrEMBL top hitse value%identityAlignment
A0A5D3E4Y7 Mitochondrial import inner membrane translocase subunit tim166.4e-5890.58Show/hide
Query:  TSIFSSSGFNDSGPVIKASQLIMAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYD
        +SI SSSGFNDSG V++AS LIMAAKILANLIVMGSGILARAFVQAYRQAL NASKSGVAQET+QNTVRRASKVMTEQEARQILGVTEE PWEEVVKKYD
Subjt:  TSIFSSSGFNDSGPVIKASQLIMAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYD

Query:  TLFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS
         LFE+NAQTGSFYLQSKVHRAKERLETLYQ+KG+DAPS
Subjt:  TLFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS

A0A6J1DR54 mitochondrial import inner membrane translocase subunit PAM16 like 2-like1.4e-4993.97Show/hide
Query:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK
        MAAKILANLIVMGSGILARAFVQAYRQAL NASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEE PWEE+VKKYDTLFE+NAQ GSFYLQSKVHRAK
Subjt:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK

Query:  ERLETLYQSKGEDAPS
        ERLETLYQSK +DAPS
Subjt:  ERLETLYQSKGEDAPS

A0A6J1EF52 mitochondrial import inner membrane translocase subunit PAM16 like 2-like1.3e-5095.69Show/hide
Query:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK
        MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVT E PWEE+VKKYD LFEKNAQTGSFYLQSKVHRAK
Subjt:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK

Query:  ERLETLYQSKGEDAPS
        ERLETLYQSKG+DAPS
Subjt:  ERLETLYQSKGEDAPS

A0A6J1HHA5 mitochondrial import inner membrane translocase subunit PAM16 like 2-like1.1e-4993.1Show/hide
Query:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK
        MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQN+VRRASKVMTEQEARQILG+T E PWEE+VKKYD LFE+NAQTGSFYLQSKVHRAK
Subjt:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK

Query:  ERLETLYQSKGEDAPS
        ERLETLYQSKG+DAPS
Subjt:  ERLETLYQSKGEDAPS

A0A6J1IG86 mitochondrial import inner membrane translocase subunit PAM16 like 2-like1.1e-4993.97Show/hide
Query:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK
        MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGV+ E PWEE+VKKYD LFEKN QTGSFYLQSKVHRAK
Subjt:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK

Query:  ERLETLYQSKGEDAPS
        ERLETLYQSKG+DAPS
Subjt:  ERLETLYQSKGEDAPS

SwissProt top hitse value%identityAlignment
Q6PBL0 Mitochondrial import inner membrane translocase subunit tim169.7e-1146.23Show/hide
Query:  AKILANLIVMGSGILARAFVQAYRQ--ALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKN--AQTGSFYLQSKVHR
        AK LA +IVMG+ ++ RAF +A RQ  A + A+     Q   Q+    +   MT QEA+QIL ++   P EE+ K Y+ LF+ N  A  GSFY+QSKV R
Subjt:  AKILANLIVMGSGILARAFVQAYRQ--ALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKN--AQTGSFYLQSKVHR

Query:  AKERLE
        AKERL+
Subjt:  AKERLE

Q93VV9 Mitochondrial import inner membrane translocase subunit PAM16 like 22.4e-3871.55Show/hide
Query:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK
        MA ++LANLIVMGSGI+ RA  QAYRQAL NASKSGVAQE +QN VR+A K +TEQEARQILGVTE+  WEE+++KYD LFE NA+ GSFYLQSKVHRAK
Subjt:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK

Query:  ERLETLYQSKGEDAPS
        E LE +Y+S+G   PS
Subjt:  ERLETLYQSKGEDAPS

Q93W66 Mitochondrial import inner membrane translocase subunit PAM16 like 17.6e-3270.37Show/hide
Query:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK
        MAA++LA++IVMGSGI+ARA  QAYRQAL NASK+GVA E  Q T++R   +  E EARQILGVTE+  W+E++KKYDTLFE+NAQ GSFYLQSKVHRAK
Subjt:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK

Query:  ERLETLYQ
        E LET YQ
Subjt:  ERLETLYQ

Q9CQV1 Mitochondrial import inner membrane translocase subunit TIM161.1e-0945.28Show/hide
Query:  AKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKV--MTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQT--GSFYLQSKVHR
        AK LA +IVMG  ++ RAF +A RQ    +  +  A+    +    AS +  ++ QEA+QIL V++  P EEV K Y+ LF+ N ++  GSFYLQSKV R
Subjt:  AKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKV--MTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQT--GSFYLQSKVHR

Query:  AKERLE
        AKERL+
Subjt:  AKERLE

Q9Y3D7 Mitochondrial import inner membrane translocase subunit TIM161.4e-0945.28Show/hide
Query:  AKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKV--MTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQT--GSFYLQSKVHR
        AK LA +IVMG  ++ RAF +A RQ    +  +  A+    +    AS +  ++ QEA+QIL V++  P EEV K Y+ LF+ N ++  GSFYLQSKV R
Subjt:  AKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKV--MTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQT--GSFYLQSKVHR

Query:  AKERLE
        AKERL+
Subjt:  AKERLE

Arabidopsis top hitse value%identityAlignment
AT3G59280.1 Protein Transporter, Pam161.7e-3971.55Show/hide
Query:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK
        MA ++LANLIVMGSGI+ RA  QAYRQAL NASKSGVAQE +QN VR+A K +TEQEARQILGVTE+  WEE+++KYD LFE NA+ GSFYLQSKVHRAK
Subjt:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK

Query:  ERLETLYQSKGEDAPS
        E LE +Y+S+G   PS
Subjt:  ERLETLYQSKGEDAPS

AT5G61880.1 Protein Transporter, Pam165.4e-3370.37Show/hide
Query:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK
        MAA++LA++IVMGSGI+ARA  QAYRQAL NASK+GVA E  Q T++R   +  E EARQILGVTE+  W+E++KKYDTLFE+NAQ GSFYLQSKVHRAK
Subjt:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK

Query:  ERLETLYQ
        E LET YQ
Subjt:  ERLETLYQ

AT5G61880.2 Protein Transporter, Pam165.4e-3370.37Show/hide
Query:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK
        MAA++LA++IVMGSGI+ARA  QAYRQAL NASK+GVA E  Q T++R   +  E EARQILGVTE+  W+E++KKYDTLFE+NAQ GSFYLQSKVHRAK
Subjt:  MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIPWEEVVKKYDTLFEKNAQTGSFYLQSKVHRAK

Query:  ERLETLYQ
        E LET YQ
Subjt:  ERLETLYQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGATTCCACTGAAACGATTGCCGGAACACCTGCCTCTCGACTCATCTCCGGTACCTCCATATTCAGCTCTAGCGGCTTTAACGATTCCGGACCTGTTATCAAGGC
CAGCCAATTAATCATGGCTGCAAAAATTCTTGCCAATTTAATTGTTATGGGCTCTGGGATACTTGCGAGGGCCTTTGTTCAAGCCTACCGTCAAGCTCTTACAAATGCTT
CAAAGTCCGGTGTTGCTCAAGAAACAATACAAAATACTGTTCGTAGAGCAAGCAAAGTGATGACAGAGCAAGAAGCCAGACAGATTCTCGGCGTCACCGAGGAAATACCT
TGGGAAGAAGTTGTGAAGAAATATGACACTTTGTTTGAAAAGAATGCTCAAACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCT
CTATCAGAGCAAAGGTGAAGATGCCCCTAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGATTCCACTGAAACGATTGCCGGAACACCTGCCTCTCGACTCATCTCCGGTACCTCCATATTCAGCTCTAGCGGCTTTAACGATTCCGGACCTGTTATCAAGGC
CAGCCAATTAATCATGGCTGCAAAAATTCTTGCCAATTTAATTGTTATGGGCTCTGGGATACTTGCGAGGGCCTTTGTTCAAGCCTACCGTCAAGCTCTTACAAATGCTT
CAAAGTCCGGTGTTGCTCAAGAAACAATACAAAATACTGTTCGTAGAGCAAGCAAAGTGATGACAGAGCAAGAAGCCAGACAGATTCTCGGCGTCACCGAGGAAATACCT
TGGGAAGAAGTTGTGAAGAAATATGACACTTTGTTTGAAAAGAATGCTCAAACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCT
CTATCAGAGCAAAGGTGAAGATGCCCCTAGTTGATGAACATCCTCAGGAATATGTTGTGTTTTGCACATTTTACTGATTTTCTATAATTTTTATTTTGGTGATGGTTGGC
AAGAATGATGATTCTTTTTAAAAATTTTAAATTCAAGCTAGTGGTTCTTGAAGGTAATATGTAAATTATCATTTGGACAATTGCATGTATTGCAATCTAACACAATAATA
CAAAATTTAGCTCAATCTAAAATTATTTGC
Protein sequenceShow/hide protein sequence
MSDSTETIAGTPASRLISGTSIFSSSGFNDSGPVIKASQLIMAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTEEIP
WEEVVKKYDTLFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS