; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G011350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G011350
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationchr02:13378771..13379276
RNA-Seq ExpressionLsi02G011350
SyntenyLsi02G011350
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044700.1 putative polygalacturonase [Cucumis melo var. makuwa]6.9e-4078.9Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE
        GGYGYA+NITFEKITLKN +NPIIIDQYYTS+AYSRK KG+DIKVSDVTYREVNGTS NE+AI  NCSQ RCSNIIL+NV+IK T P +EAK  CQNVD 
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE

Query:  KSLSVVPTV
        K LS VP V
Subjt:  KSLSVVPTV

KGN53196.1 hypothetical protein Csa_014667 [Cucumis sativus]4.5e-3976.15Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE
        GGYGYA+NITFEKIT+KN +NPIIIDQYY+S+AYSRK KG+DIKVSDVTYREVNGTS NEDAI  NCSQ RCSNIIL+NV+IK T P ++AK  CQN D 
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE

Query:  KSLSVVPTV
        K LS VP V
Subjt:  KSLSVVPTV

XP_008454473.1 PREDICTED: probable polygalacturonase At3g15720 [Cucumis melo]6.9e-4078.9Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE
        GGYGYA+NITFEKITLKN +NPIIIDQYYTS+AYSRK KG+DIKVSDVTYREVNGTS NE+AI  NCSQ RCSNIIL+NV+IK T P +EAK  CQNVD 
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE

Query:  KSLSVVPTV
        K LS VP V
Subjt:  KSLSVVPTV

XP_031739967.1 probable polygalacturonase At3g15720 [Cucumis sativus]4.5e-3976.15Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE
        GGYGYA+NITFEKIT+KN +NPIIIDQYY+S+AYSRK KG+DIKVSDVTYREVNGTS NEDAI  NCSQ RCSNIIL+NV+IK T P ++AK  CQN D 
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE

Query:  KSLSVVPTV
        K LS VP V
Subjt:  KSLSVVPTV

XP_038888676.1 probable polygalacturonase At3g15720 [Benincasa hispida]1.5e-3978.9Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE
        GGYGYA+NITFEKITLKN +NPIIIDQYYTS+AYSRK KG+DIKVSDVTYREVNGTS NEDAI LNCS+ RC+NIIL+NV+IK  T  KEAK  CQNVD 
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE

Query:  KSLSVVPTV
        K LS VP V
Subjt:  KSLSVVPTV

TrEMBL top hitse value%identityAlignment
A0A0A0KZ95 Uncharacterized protein2.2e-3976.15Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE
        GGYGYA+NITFEKIT+KN +NPIIIDQYY+S+AYSRK KG+DIKVSDVTYREVNGTS NEDAI  NCSQ RCSNIIL+NV+IK T P ++AK  CQN D 
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE

Query:  KSLSVVPTV
        K LS VP V
Subjt:  KSLSVVPTV

A0A1S3BYT5 probable polygalacturonase At3g157203.4e-4078.9Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE
        GGYGYA+NITFEKITLKN +NPIIIDQYYTS+AYSRK KG+DIKVSDVTYREVNGTS NE+AI  NCSQ RCSNIIL+NV+IK T P +EAK  CQNVD 
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE

Query:  KSLSVVPTV
        K LS VP V
Subjt:  KSLSVVPTV

A0A5D3CYS8 Putative polygalacturonase3.4e-4078.9Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE
        GGYGYA+NITFEKITLKN +NPIIIDQYYTS+AYSRK KG+DIKVSDVTYREVNGTS NE+AI  NCSQ RCSNIIL+NV+IK T P +EAK  CQNVD 
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE

Query:  KSLSVVPTV
        K LS VP V
Subjt:  KSLSVVPTV

A0A6J1GVS6 probable polygalacturonase At3g157203.2e-3568.81Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE
        GGYGYA+NITFEKITL+NV+NPIIIDQ+YT++AY RKNKG +IKVSDVTYR+V+GTS NE AI L+CS+ RC+NII+  V+I T+T  +EAK+FCQN D 
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE

Query:  KSLSVVPTV
        +S S VP V
Subjt:  KSLSVVPTV

A0A6J1IWN4 probable polygalacturonase At3g157202.5e-3568.81Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE
        GGYGYA+NITFEKITL+NV+NPIIIDQ+YT++AY RKNKG +IKVSDVTYR+V+GTS NE AI L+CS+ RC+NII+  V+I T++  +EAK+FCQN D 
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDE

Query:  KSLSVVPTV
        KS S VP V
Subjt:  KSLSVVPTV

SwissProt top hitse value%identityAlignment
O22818 Probable polygalacturonase At2g438604.9e-1237.5Show/hide
Query:  YARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTR-CSNIILNNVSIKTTTPRKEAKTFCQNVDEKSL
        +ARNI F+ I +K V+NPIIIDQ+Y       K +   +KVS+V Y +++GTS  E A++L+CS+ + C+ I++++V++   +  + A+  C N +  + 
Subjt:  YARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTR-CSNIILNNVSIKTTTPRKEAKTFCQNVDEKSL

Query:  SVVP
         VVP
Subjt:  SVVP

O23147 Polygalacturonase ADPG12.4e-1140.54Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGID----IKVSDVTYREVNGTSVNEDAIILNCSQT-RCSNIILNNVSIKTTTPRKEAKTFC
        GG G A+NI F+ I ++NV+NPIIIDQ Y       K+K  D    ++V +V Y+ ++GTS  + AI LNCS+   C  I+L NV IK  T        C
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGID----IKVSDVTYREVNGTSVNEDAIILNCSQT-RCSNIILNNVSIKTTTPRKEAKTFC

Query:  QNVDEKSLSVV
        +N + K+   V
Subjt:  QNVDEKSLSVV

P35337 Polygalacturonase1.1e-1141.24Show/hide
Query:  ARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTR-CSNIILNNVSIKTTTPRKEAKTFCQNVDEK
        A  I FE I L  V NPI+IDQ Y  +    KNK   IK+ D+T+R + GTS N+DA+ L CS+   C N+ + +++I+ T P       C NV  K
Subjt:  ARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTR-CSNIILNNVSIKTTTPRKEAKTFCQNVDEK

Q8RY29 Polygalacturonase ADPG21.4e-1145.24Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQT-RCSNIILNNVSIK
        GG G A NI F+ I + NV+NPIIIDQ Y   +     K   ++V +V YR+++GTS +E+AI  NCS+   C  I+L+ V+IK
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQT-RCSNIILNNVSIK

Q9FY19 Polygalacturonase1.7e-1243.68Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQT-RCSNIILNNVSIKTTT
        GG G A +IT+E + + N  NPI+I+Q+Y + A + KN+   +K+ DVT++ ++GTS    AI L CS +  CSNI L+NV +K T+
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQT-RCSNIILNNVSIKTTT

Arabidopsis top hitse value%identityAlignment
AT1G70500.1 Pectin lyase-like superfamily protein2.0e-1333.64Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQ-TRCSNIILNNVSIKTTTPRKEAKTFCQNVD
        GG GY + + FE + +++V NPIIIDQ+Y     + +N+   + +S++ YR + GT+ +  AI   CS    CS+I+LNN++++    + EA  +C + +
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQ-TRCSNIILNNVSIKTTTPRKEAKTFCQNVD

Query:  EKSLSVV
             VV
Subjt:  EKSLSVV

AT2G43860.1 Pectin lyase-like superfamily protein3.5e-1337.5Show/hide
Query:  YARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTR-CSNIILNNVSIKTTTPRKEAKTFCQNVDEKSL
        +ARNI F+ I +K V+NPIIIDQ+Y       K +   +KVS+V Y +++GTS  E A++L+CS+ + C+ I++++V++   +  + A+  C N +  + 
Subjt:  YARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTR-CSNIILNNVSIKTTTPRKEAKTFCQNVDEKSL

Query:  SVVP
         VVP
Subjt:  SVVP

AT4G32375.1 Pectin lyase-like superfamily protein1.5e-1337.62Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYS-RKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQ-TRCSNIILNNVSIKTTTPRKEAKTFCQNV
        GG G A+NI +E ITL + + PIIIDQ+Y +  ++  K     +KVS+VT+R   GT  N+ AI L+C + T C +I++ +++I +++ ++    +CQ  
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYS-RKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQ-TRCSNIILNNVSIKTTTPRKEAKTFCQNV

Query:  D
        D
Subjt:  D

AT4G35670.1 Pectin lyase-like superfamily protein1.2e-1341.75Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQ-TRCSNIILNNVSIKTTTPRKEAKTFCQNVD
        GG GYARNI+F  ITL N +NPIIIDQ+Y      R  +   + +S+V + +  GTS N++AI L CS+ T C +++++ + I T     + K  CQ VD
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQ-TRCSNIILNNVSIKTTTPRKEAKTFCQNVD

Query:  EKS
         +S
Subjt:  EKS

AT5G27530.1 Pectin lyase-like superfamily protein6.7e-1744.66Show/hide
Query:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQ-TRCSNIILNNVSIKTTTPRKEAKTFCQNVD
        GG GYARNI+FE ITL NV+NPIIIDQ YT        K   + +S V Y    GT++NEDAI+L CS  T C +++++++ + T    ++ K  C+NV+
Subjt:  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQ-TRCSNIILNNVSIKTTTPRKEAKTFCQNVD

Query:  EKS
         +S
Subjt:  EKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAATGGAGGGTATGGATATGCAAGGAACATCACATTTGAGAAGATAACACTTAAGAATGTGAGAAATCCAATCATTATTGATCAATACTACACGTCTTTTGCATA
TTCAAGGAAAAATAAGGGAATAGACATAAAAGTGAGTGATGTGACATATCGTGAAGTTAATGGAACATCAGTAAATGAAGATGCAATTATTTTGAACTGCTCTCAAACTC
GTTGCTCAAATATTATATTGAACAACGTGAGCATAAAAACAACTACTCCAAGAAAAGAAGCCAAAACTTTTTGTCAAAATGTTGATGAAAAATCTTTATCAGTTGTCCCA
ACCGTGCTTCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAATGGAGGGTATGGATATGCAAGGAACATCACATTTGAGAAGATAACACTTAAGAATGTGAGAAATCCAATCATTATTGATCAATACTACACGTCTTTTGCATA
TTCAAGGAAAAATAAGGGAATAGACATAAAAGTGAGTGATGTGACATATCGTGAAGTTAATGGAACATCAGTAAATGAAGATGCAATTATTTTGAACTGCTCTCAAACTC
GTTGCTCAAATATTATATTGAACAACGTGAGCATAAAAACAACTACTCCAAGAAAAGAAGCCAAAACTTTTTGTCAAAATGTTGATGAAAAATCTTTATCAGTTGTCCCA
ACCGTGCTTCGTTAA
Protein sequenceShow/hide protein sequence
MSNGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVVP
TVLR