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Lsi02G011450 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G011450
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGATA transcription factor 24-like
Genome locationchr02:13506790..13507827
RNA-Seq ExpressionLsi02G011450
SyntenyLsi02G011450
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000679 - Zinc finger, GATA-type
IPR013088 - Zinc finger, NHR/GATA-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
NP_001267520.1 GATA transcription factor 24-like [Cucumis sativus]2.9e-3893.83Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
        ++MQRNKGQFTSSKPIHEDSSLA+ASWE NESWS+DGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK

XP_011658540.1 GATA transcription factor 24-like isoform X1 [Cucumis sativus]2.9e-3893.83Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
        ++MQRNKGQFTSSKPIHEDSSLA+ASWE NESWS+DGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK

XP_011658542.1 GATA transcription factor 24-like isoform X3 [Cucumis sativus]2.9e-3893.83Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
        ++MQRNKGQFTSSKPIHEDSSLA+ASWE NESWS+DGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK

XP_038898280.1 GATA transcription factor 24-like isoform X1 [Benincasa hispida]1.2e-3996.3Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
        ++MQRNKGQFTSSKPIHEDSSLAIASWEPNE WSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK

XP_038898283.1 GATA transcription factor 24-like isoform X2 [Benincasa hispida]1.2e-3996.3Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
        ++MQRNKGQFTSSKPIHEDSSLAIASWEPNE WSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK

TrEMBL top hitse value%identityAlignment
A0A0A0K7I4 Uncharacterized protein1.4e-3893.83Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
        ++MQRNKGQFTSSKPIHEDSSLA+ASWE NESWS+DGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK

A0A1S3CGG8 GATA transcription factor 24-like isoform X36.9e-3892.59Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
        ++MQRNKGQFTSSKP HEDSSLA+ASWE NESWS+DGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK

A0A1S3CHY0 GATA transcription factor 24-like isoform X26.9e-3892.59Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
        ++MQRNKGQFTSSKP HEDSSLA+ASWE NESWS+DGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK

A0A5D3C0L3 GATA transcription factor 24-like isoform X16.9e-3892.59Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
        ++MQRNKGQFTSSKP HEDSSLA+ASWE NESWS+DGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK

S6DLL3 GATA transcription factor 24-like1.4e-3893.83Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
        ++MQRNKGQFTSSKPIHEDSSLA+ASWE NESWS+DGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK

SwissProt top hitse value%identityAlignment
Q5Z4U5 GATA transcription factor 207.3e-2155.56Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
        ++MQRN+GQFTSSKP  ++++  + + + + +W +   G       C HCGI+ K+TPMMRRGPDGPRTLCNACGLMWANK
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK

Q6Z433 GATA transcription factor 175.6e-2160.49Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
        ++MQRN+GQFTSSK   E+++  I S E + +W     G       C HCGIS  STPMMRRGPDGPRTLCNACGLMWANK
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK

Q8GXL7 GATA transcription factor 244.3e-2955.05Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKKPATIVA--PAGSFRLDLA
        ++MQR KGQFTS+K  ++DS    + W  N+SW+ +G  +Q+ E+LCRHCG SEKSTPMMRRGPDGPRTLCNACGLMWANK     ++  P       L+
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKKPATIVA--PAGSFRLDLA

Query:  LNKGKEAKM
        LNK ++A +
Subjt:  LNKGKEAKM

Q8H1G0 GATA transcription factor 283.6e-2854.63Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKKPATIVAPAG-SFRLDLAL
        ++MQRNKGQFTS+K  +++++ A +SW  N++W+ + + +Q QEI CRHCGI EKSTPMMRRGP GPRTLCNACGLMWANK     ++ A      +L L
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKKPATIVAPAG-SFRLDLAL

Query:  NKGKEAKM
        NK ++A +
Subjt:  NKGKEAKM

Q9LRH6 GATA transcription factor 254.9e-1756.79Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
        ++M RNKGQFTSSK     +  A  S    +S  +D +     EI C HCGIS K TPMMRRGP GPRTLCNACGL WAN+
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK

Arabidopsis top hitse value%identityAlignment
AT1G51600.1 ZIM-LIKE 22.6e-2954.63Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKKPATIVAPAG-SFRLDLAL
        ++MQRNKGQFTS+K  +++++ A +SW  N++W+ + + +Q QEI CRHCGI EKSTPMMRRGP GPRTLCNACGLMWANK     ++ A      +L L
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKKPATIVAPAG-SFRLDLAL

Query:  NKGKEAKM
        NK ++A +
Subjt:  NKGKEAKM

AT1G51600.2 ZIM-LIKE 22.6e-2954.63Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKKPATIVAPAG-SFRLDLAL
        ++MQRNKGQFTS+K  +++++ A +SW  N++W+ + + +Q QEI CRHCGI EKSTPMMRRGP GPRTLCNACGLMWANK     ++ A      +L L
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKKPATIVAPAG-SFRLDLAL

Query:  NKGKEAKM
        NK ++A +
Subjt:  NKGKEAKM

AT3G21175.1 ZIM-like 13.1e-3055.05Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKKPATIVA--PAGSFRLDLA
        ++MQR KGQFTS+K  ++DS    + W  N+SW+ +G  +Q+ E+LCRHCG SEKSTPMMRRGPDGPRTLCNACGLMWANK     ++  P       L+
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKKPATIVA--PAGSFRLDLA

Query:  LNKGKEAKM
        LNK ++A +
Subjt:  LNKGKEAKM

AT3G21175.2 ZIM-like 13.1e-3055.05Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKKPATIVA--PAGSFRLDLA
        ++MQR KGQFTS+K  ++DS    + W  N+SW+ +G  +Q+ E+LCRHCG SEKSTPMMRRGPDGPRTLCNACGLMWANK     ++  P       L+
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKKPATIVA--PAGSFRLDLA

Query:  LNKGKEAKM
        LNK ++A +
Subjt:  LNKGKEAKM

AT4G24470.1 GATA-type zinc finger protein with TIFY domain3.5e-1856.79Show/hide
Query:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK
        ++M RNKGQFTSSK     +  A  S    +S  +D +     EI C HCGIS K TPMMRRGP GPRTLCNACGL WAN+
Subjt:  MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGCAATGATGG
AAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTT
GTGGACTCATGTGGGCAAACAAGAAACCAGCCACCATTGTAGCCCCAGCAGGAAGTTTCCGATTGGATCTAGCACTCAACAAGGGTAAGGAGGCGAAAATGCCTTACCCA
GAAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGCAATGATGG
AAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTT
GTGGACTCATGTGGGCAAACAAGAAACCAGCCACCATTGTAGCCCCAGCAGGAAGTTTCCGATTGGATCTAGCACTCAACAAGGGTAAGGAGGCGAAAATGCCTTACCCA
GAAGATTAA
Protein sequenceShow/hide protein sequence
MKMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKKPATIVAPAGSFRLDLALNKGKEAKMPYP
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