; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G011600 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G011600
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionX-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like
Genome locationchr02:13955732..13956445
RNA-Seq ExpressionLsi02G011600
SyntenyLsi02G011600
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583719.1 hypothetical protein SDJN03_19651, partial [Cucurbita argyrosperma subsp. sororia]3.1e-5068.7Show/hide
Query:  EAMDLDSNESLNRSKVERLKRMVMFI----VFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIDD----SSSSSS
        E++DLD   S + + VERLKRMV FI    VFSLVLA FFS FS+FPHSFTV FSTFLFS LNH MERK+MFLICNGILFLLATSSV+ D    SSSSSS
Subjt:  EAMDLDSNESLNRSKVERLKRMVMFI----VFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIDD----SSSSSS

Query:  SSFGSCSFPQSHHHHFEEHDLVA-AIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEEELEEDEGCFTEEEEEEEEEEEEEEEEEEEEEEGEEE
        SSFG CSF  S HH   EHDLVA A DG DS+ESE+Q  EE E    +E E+E EE      +EE EEDEGCFTEE EEEEEEE             EEE
Subjt:  SSFGSCSFPQSHHHHFEEHDLVA-AIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEEELEEDEGCFTEEEEEEEEEEEEEEEEEEEEEEGEEE

Query:  EEEGRRRELEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT-HLIAV
        EEEG RR+LEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT  LIAV
Subjt:  EEEGRRRELEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT-HLIAV

KAG7019366.1 hypothetical protein SDJN02_18326, partial [Cucurbita argyrosperma subsp. argyrosperma]6.2e-5166.93Show/hide
Query:  MEAMDLDSNESLN-------RSKVERLKRMVMFI----VFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIDD--
        +EA+++DS ESL+        + VERLKRMV FI    VFSLVLA FFS FSLFPHSFTV FSTFLFS LNH MERK+MFLICNGILFLLATSSV+ D  
Subjt:  MEAMDLDSNESLN-------RSKVERLKRMVMFI----VFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIDD--

Query:  --SSSSSSSSFGSCSFPQSHHHHFEEHDLVA-AIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEEELEEDEGCFTEEEEEEEEEEEEEEEEEE
          SSSSSSSSFG CSF  S HH   EHDLVA A DG DS+ESE+Q  E+E  +  E E+E EE       +EE EEDEGCFTEE EEEEEE         
Subjt:  --SSSSSSSSFGSCSFPQSHHHHFEEHDLVA-AIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEEELEEDEGCFTEEEEEEEEEEEEEEEEEE

Query:  EEEEGEEEEEEGRRRELEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT-HLIAV
             EEEEEEG RR+LEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT  LIAV
Subjt:  EEEEGEEEEEEGRRRELEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT-HLIAV

XP_022927104.1 X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like [Cucurbita moschata]5.6e-4466.8Show/hide
Query:  EAMDLDSNESLNRSKVERLKRMVMFI----VFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIDD-----SSSSS
        E++DLD   S N + VERLKRMV FI    VFSLVLA FFS FSLFPHSFTV FSTFLFS LNH MERK+MFLICNGILFLLATSSV+ D     SSSSS
Subjt:  EAMDLDSNESLNRSKVERLKRMVMFI----VFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIDD-----SSSSS

Query:  SSSFGSCSFPQSHHHHFEEHDLVA-AIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEEELEEDEGCFTEEEEEEEEEEEEEEEEEEEEEEGEE
        SSSFG  SF  S HH   EHDLVA A DG DS+ESE+Q  EE E    +E E+E E+ + DE E+E          E+E EE+EE+EE+E    EE  EE
Subjt:  SSSFGSCSFPQSHHHHFEEHDLVA-AIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEEELEEDEGCFTEEEEEEEEEEEEEEEEEEEEEEGEE

Query:  EEEEGRRRELEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT-HLIAV
        EEEEG+RR+LEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT  LIAV
Subjt:  EEEEGRRRELEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT-HLIAV

XP_031736046.1 uncharacterized protein LOC105434473 [Cucumis sativus]2.7e-4668.56Show/hide
Query:  SKVERLKRMVMFIVFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICN-GILFLLATSSVIDDSSSSSSSSFGS-CSFPQS---HHHHF
        SKVE LKRMV   VF L+L  FFSLFSLFPHSF+V FSTFLFS L HA+ERKYMFLICN GILFLLATSSV   SSSSSSSSFG+ C FP S   HHH+ 
Subjt:  SKVERLKRMVMFIVFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICN-GILFLLATSSVIDDSSSSSSSSFGS-CSFPQS---HHHHF

Query:  EEHDLVAAIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDE-LEEELEEDEGCFTEEEEEEEEEEEEEEEEEEEEEEGEEEEEEGRRRELEVVVSTE
         EHD+VAA+  +  EES+  + +       EEEEE+EE I R E LEEELEEDEGCFT+E EEEEEEE             EE+++EG+RRELE+VVSTE
Subjt:  EEHDLVAAIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDE-LEEELEEDEGCFTEEEEEEEEEEEEEEEEEEEEEEGEEEEEEGRRRELEVVVSTE

Query:  ELNKKIEEFIRKMKEEMRIEAAQTHLIAV
        ELNKKIEEFIRKMKEEMRIEAAQTHLIAV
Subjt:  ELNKKIEEFIRKMKEEMRIEAAQTHLIAV

XP_038877796.1 glutamic acid-rich protein-like [Benincasa hispida]2.7e-6269.53Show/hide
Query:  EAMDLDSNESLNR-----------------SKVERLKRMVMFIVFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSV
        EA +LDSN+SLN                  SKVE L RMV F VFSLVLA FFS FSLFPHSF+V FSTF+FS LNHAMERKYMFLICNGILFLLATSSV
Subjt:  EAMDLDSNESLNR-----------------SKVERLKRMVMFIVFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSV

Query:  IDDSSSSSSSSFGSCSF---PQSHHHHFEEHDLVAAIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEEELEEDEGCFTEEEEEEEEEEEEEEE
        I+D SSSSSSSFG+CSF      HHHH  EHDLVAAIDGSDSEES QQNQ        EEEEEEEEEI+RDELEEE+EEDEGCFT+E E+          
Subjt:  IDDSSSSSSSSFGSCSF---PQSHHHHFEEHDLVAAIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEEELEEDEGCFTEEEEEEEEEEEEEEE

Query:  EEEEEEEGEEEEEEGRRRELEVVVSTEELNKKIEEFIRKMKEEMRIEAAQTHLIAV
                ++EEEEG+RRELEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT LIAV
Subjt:  EEEEEEEGEEEEEEGRRRELEVVVSTEELNKKIEEFIRKMKEEMRIEAAQTHLIAV

TrEMBL top hitse value%identityAlignment
A0A0A0LVQ2 Uncharacterized protein7.7e-2361.34Show/hide
Query:  SKVERLKRMVMFIVFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICN-GILFLLATSSVIDDSSSSSSSSFGS-CSFPQS---HHHHF
        SKVE LKRMV   VF L+L  FFSLFSLFPHSF+V FSTFLFS L HA+ERKYMFLICN GILFLLATSSV   SSSSSSSSFG+ C FP S   HHH+ 
Subjt:  SKVERLKRMVMFIVFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICN-GILFLLATSSVIDDSSSSSSSSFGS-CSFPQS---HHHHF

Query:  EEHDLVAAIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDE-LEEELEEDEGCFTEEEEEEEEEEEEEEEEEEEEEEGEEEEEEGRRRELE
         EHD+VAA+  +  EES+  + +       EEEEE+EE I R E LEEELEEDEGCFT+E EEEEEEE+E ++  ++    E   + G  R +E
Subjt:  EEHDLVAAIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDE-LEEELEEDEGCFTEEEEEEEEEEEEEEEEEEEEEEGEEEEEEGRRRELE

A0A6J1CN51 nardilysin-like3.8e-2247.31Show/hide
Query:  EAMDLDSNESLN---------RSKVERLKRMVMFI----VFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIDDS
        +A DLDS+ESLN          SKV+RLK MV F+    VF LV+A F SLFSLFPHSFT+ FS  LFS LNHA++R YMFL+CNGIL LLATS +   +
Subjt:  EAMDLDSNESLN---------RSKVERLKRMVMFI----VFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIDDS

Query:  SSSSSSSFGSCSFPQSHHHHFEEHDLVAAIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEE--------ELEEDEGCFTEEEEEEEEEEEEEE
        S                HHH+E                 ++ ++EEE+   E+++++   I+  +L          E E+DEGCFT+E EEEEEEEE + 
Subjt:  SSSSSSSFGSCSFPQSHHHHFEEHDLVAAIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEE--------ELEEDEGCFTEEEEEEEEEEEEEE

Query:  EEEEEEEEGEEEEEEGRRRELEVVVSTEELNKKIEEFIRKMKEEMRIE---AAQTHLIAV
         E                 ELEVVVSTEELNKKIEEFIRKMKEEMRI+   AAQT L+AV
Subjt:  EEEEEEEEGEEEEEEGRRRELEVVVSTEELNKKIEEFIRKMKEEMRIE---AAQTHLIAV

A0A6J1EH25 X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like2.7e-4466.8Show/hide
Query:  EAMDLDSNESLNRSKVERLKRMVMFI----VFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIDD-----SSSSS
        E++DLD   S N + VERLKRMV FI    VFSLVLA FFS FSLFPHSFTV FSTFLFS LNH MERK+MFLICNGILFLLATSSV+ D     SSSSS
Subjt:  EAMDLDSNESLNRSKVERLKRMVMFI----VFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIDD-----SSSSS

Query:  SSSFGSCSFPQSHHHHFEEHDLVA-AIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEEELEEDEGCFTEEEEEEEEEEEEEEEEEEEEEEGEE
        SSSFG  SF  S HH   EHDLVA A DG DS+ESE+Q  EE E    +E E+E E+ + DE E+E          E+E EE+EE+EE+E    EE  EE
Subjt:  SSSFGSCSFPQSHHHHFEEHDLVA-AIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEEELEEDEGCFTEEEEEEEEEEEEEEEEEEEEEEGEE

Query:  EEEEGRRRELEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT-HLIAV
        EEEEG+RR+LEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT  LIAV
Subjt:  EEEEGRRRELEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT-HLIAV

A0A7J9CJ99 Uncharacterized protein1.3e-0643.05Show/hide
Query:  LVLASFFSLF---------SLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIDDSSSSSSSSFG-SCSFPQSHHHHFEEHDLVAAIDG
        +V  SF S+F         SLFPHSF V FSTFLFSF  H +ERKYMF+ICNGIL  +A SSV   S S ++ S     S P +        D+ A    
Subjt:  LVLASFFSLF---------SLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIDDSSSSSSSSFG-SCSFPQSHHHHFEEHDLVAAIDG

Query:  SDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEEELEEDEGCFTEEEEEEEEEE-----EEEEEEEEEEEE----GEEEEE---EGRRRELEVVVSTE
                 N+ ++ +     E EE E+ Y +E EE+ E +     +EEEEEEE E     E+ + E  +E E    G++EE     G + EL + +STE
Subjt:  SDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEEELEEDEGCFTEEEEEEEEEE-----EEEEEEEEEEEE----GEEEEE---EGRRRELEVVVSTE

Query:  ELNKKIEEFIRKMKEEMRIEAAQ
        ELN+KIEEFIRKMKEE+RIEA Q
Subjt:  ELNKKIEEFIRKMKEEMRIEAAQ

A0A7J9HNS4 Uncharacterized protein1.2e-0742.92Show/hide
Query:  LVLASFFSLF---------SLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIDDSSSSSSSSFG-SCSFPQSHHHHFEEHDLVAAIDG
        +V  SF S+F         SLFPHSF V FSTFLFSF  H +ERKYMF+ICNGIL  +A SSV   S S ++ S     S P +        D+ AA   
Subjt:  LVLASFFSLF---------SLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIDDSSSSSSSSFG-SCSFPQSHHHHFEEHDLVAAIDG

Query:  SDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEEELEEDEGCFTEEEEEEEEEEEEEEEEEEEEEEGE-----------EEEEE----GRRRELEVVV
                  + ++ +     E EE E+ Y +E EE+ E +     +EEEEEEEEEE E     E+ +GE           ++EE     G + EL + +
Subjt:  SDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEEELEEDEGCFTEEEEEEEEEEEEEEEEEEEEEEGE-----------EEEEE----GRRRELEVVV

Query:  STEELNKKIEEFIRKMKEEMRIEAAQ
        STEELN+KIEEFIRKMKEE+RIEA Q
Subjt:  STEELNKKIEEFIRKMKEEMRIEAAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCCATGGATTTGGATTCAAATGAAAGTTTGAATCGCAGCAAAGTTGAGAGGTTGAAAAGGATGGTGATGTTCATTGTGTTTTCTTTGGTATTAGCCTCGTTTTT
TTCTCTATTCTCTTTATTCCCTCATTCCTTCACTGTCTGTTTCTCCACTTTCCTCTTCTCTTTCCTCAACCATGCTATGGAGAGAAAGTACATGTTCTTAATTTGTAATG
GAATCCTGTTTCTTCTAGCTACTTCCTCTGTTATTGATGATTCTTCTTCTTCTTCCTCCTCCTCTTTTGGGTCTTGTTCATTTCCTCAATCTCATCATCATCACTTTGAA
GAACATGATCTTGTGGCTGCCATTGATGGGTCTGATTCTGAGGAATCAGAACAACAAAATCAAGAAGAAGAAGAGATTTATAGAGGTGAAGAAGAAGAAGAAGAAGAAGA
AGAGATTTATAGAGATGAATTAGAAGAAGAATTAGAGGAAGATGAAGGGTGTTTTACAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGGAAGAAGAAGGGAATTAGAGGTGGTGGTGAGTACAGAAGAATTGAACAAGAAAATAGAAGAGTTTATTAGGAAA
ATGAAGGAAGAAATGAGGATTGAAGCAGCTCAAACTCACCTCATTGCAGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCCATGGATTTGGATTCAAATGAAAGTTTGAATCGCAGCAAAGTTGAGAGGTTGAAAAGGATGGTGATGTTCATTGTGTTTTCTTTGGTATTAGCCTCGTTTTT
TTCTCTATTCTCTTTATTCCCTCATTCCTTCACTGTCTGTTTCTCCACTTTCCTCTTCTCTTTCCTCAACCATGCTATGGAGAGAAAGTACATGTTCTTAATTTGTAATG
GAATCCTGTTTCTTCTAGCTACTTCCTCTGTTATTGATGATTCTTCTTCTTCTTCCTCCTCCTCTTTTGGGTCTTGTTCATTTCCTCAATCTCATCATCATCACTTTGAA
GAACATGATCTTGTGGCTGCCATTGATGGGTCTGATTCTGAGGAATCAGAACAACAAAATCAAGAAGAAGAAGAGATTTATAGAGGTGAAGAAGAAGAAGAAGAAGAAGA
AGAGATTTATAGAGATGAATTAGAAGAAGAATTAGAGGAAGATGAAGGGTGTTTTACAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGGAAGAAGAAGGGAATTAGAGGTGGTGGTGAGTACAGAAGAATTGAACAAGAAAATAGAAGAGTTTATTAGGAAA
ATGAAGGAAGAAATGAGGATTGAAGCAGCTCAAACTCACCTCATTGCAGTGTAA
Protein sequenceShow/hide protein sequence
MEAMDLDSNESLNRSKVERLKRMVMFIVFSLVLASFFSLFSLFPHSFTVCFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIDDSSSSSSSSFGSCSFPQSHHHHFE
EHDLVAAIDGSDSEESEQQNQEEEEIYRGEEEEEEEEEIYRDELEEELEEDEGCFTEEEEEEEEEEEEEEEEEEEEEEGEEEEEEGRRRELEVVVSTEELNKKIEEFIRK
MKEEMRIEAAQTHLIAV