CuGenDBv2

Gene ID	Lsi02G011700
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Mediator of RNA polymerase II transcription subunit 11
Genome location	chr02:14342801..14348702
RNA-Seq Expression	Lsi02G011700
Synteny	Lsi02G011700
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019404 - Mediator complex, subunit Med11

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008442051.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]

8.9e-59

97.44

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK
        MDPP QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK

Query:  LDGMKQTIDEYQVKMED
        LDGMKQTID+YQVKMED
Subjt:  LDGMKQTIDEYQVKMED

XP_022142440.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia]

4.4e-58

97.44

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK
        MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK

Query:  LDGMKQTIDEYQVKMED
        LDGMKQTIDEYQVK+ED
Subjt:  LDGMKQTIDEYQVKMED

XP_022927640.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata]

1.5e-58

98.29

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK
        MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK

Query:  LDGMKQTIDEYQVKMED
        LDGMKQTIDEYQVKMED
Subjt:  LDGMKQTIDEYQVKMED

XP_023520392.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo]

1.5e-58

98.29

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK
        MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK

Query:  LDGMKQTIDEYQVKMED
        LDGMKQTIDEYQVKMED
Subjt:  LDGMKQTIDEYQVKMED

XP_038894867.1 mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida]

7.6e-58

97.44

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK
        MD PTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK

Query:  LDGMKQTIDEYQVKMED
        LD MKQTIDEYQVKMED
Subjt:  LDGMKQTIDEYQVKMED

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L450 Mediator of RNA polymerase II transcription subunit 11

4.2e-54

79.86

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK----------------------DIQVTLRDEIKSACEYRPFEK
        MDPP  NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK                      DIQVTLRDEIKSACEYRPFEK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK----------------------DIQVTLRDEIKSACEYRPFEK

Query:  CDYSSRITNELCCKKLAYMISKLDGMKQTIDEYQVKMED
        CDYSSRITNELCCKKL YM+SKLDGMKQTID+YQVK+ED
Subjt:  CDYSSRITNELCCKKLAYMISKLDGMKQTIDEYQVKMED

A0A1S3B5G7 Mediator of RNA polymerase II transcription subunit 11

4.3e-59

97.44

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK
        MDPP QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK

Query:  LDGMKQTIDEYQVKMED
        LDGMKQTID+YQVKMED
Subjt:  LDGMKQTIDEYQVKMED

A0A6J1CKY4 Mediator of RNA polymerase II transcription subunit 11

2.1e-58

97.44

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK
        MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK

Query:  LDGMKQTIDEYQVKMED
        LDGMKQTIDEYQVK+ED
Subjt:  LDGMKQTIDEYQVKMED

A0A6J1EPJ1 Mediator of RNA polymerase II transcription subunit 11

7.4e-59

98.29

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK
        MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK

Query:  LDGMKQTIDEYQVKMED
        LDGMKQTIDEYQVKMED
Subjt:  LDGMKQTIDEYQVKMED

A0A6J1I6T5 Mediator of RNA polymerase II transcription subunit 11

1.8e-57

96.58

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK
        MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRI NELCCKKL YMI K
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK

Query:  LDGMKQTIDEYQVKMED
        LDGMKQTIDEYQVKMED
Subjt:  LDGMKQTIDEYQVKMED

SwissProt top hits

e value

%identity

Alignment

Q6ID77 Mediator of RNA polymerase II transcription subunit 11

1.5e-45

74.77

Show/hide

Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KL Y++++
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK

Query:  LDGMKQTIDEY
        L+ +KQT D Y
Subjt:  LDGMKQTIDEY

Arabidopsis top hits

e value

%identity

Alignment

AT3G01435.1 Expressed protein

1.1e-46

74.77

Show/hide

Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KL Y++++
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISK

Query:  LDGMKQTIDEY
        L+ +KQT D Y
Subjt:  LDGMKQTIDEY

Sequences

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CDS sequence

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ATGGATCCGCCAACCCAGAATACTTCATTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCC
TGCTGGTCCAAGAAAGGAATTTGTCAATAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATATC
GTCCGTTTGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGCATATATGATTTCGAAGTTAGATGGAATGAAACAAACTATTGATGAA
TATCAAGTGAAAATGGAAGATTGA

mRNA sequence

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AAAATTTAACTCAATAAGCAAAGATTTTCCTTCTTCCCCTCACTCTCTCGTGCTCCACCGAGTCGACCTTTCTCCTCCGTTTCAGCATCTCAGTGTCGTCGCCGCGTCTC
TTCCGTTGCTGCCGCCGCCGCCGTCTTTCTTCCGCTCGTGCCGCCGCATCCTCCCTTCGAGCTGGTTTTCACATTTCTGATTTGCACTGATTTTCTACTACTTTGTGGTT
ACTGATTAGTTTGTTTAAATTCCTTCATAGCTGTGTGATTTATCACAGCCGCCAGCACAGTTCTTGATGGATCCGCCAACCCAGAATACTTCATTGCAACGCCTTCAAAA
TGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAATAATCATTGCAGTGAGT
TCATGCAATTCATCAAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCGTTTGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAA
CTTTGCTGCAAGAAACTGGCATATATGATTTCGAAGTTAGATGGAATGAAACAAACTATTGATGAATATCAAGTGAAAATGGAAGATTGAGGCACATGTCCTAGTGTGCT
GCTAATCTAACTCTGCCATTTTTCCAATAATACGGGGTCGTAGAAACGAAAGGTTGGAGGGGAACTTCAGTCATGTATGTATATGATCTATCTCTGGTAGAGCTGATAGC
ATCCACTTTTGATTGTCGATTCATACCAAGATCCTGCTGTATTCTTAGAGATCTGTGTTGAAGCCTACCTAAATTGAAGGGAAGAAGAAAATAAGAAATGATGGGAAGAG
GGAAAGAGGGAAAGAGAAAGGTGGACAAATGGTGTATAAACTTAAGATGGGACCTACTTTTGTTTAATTTGGATTTGAATATCTCACCTATTTTTGGGTTATGTATTAAG
TTTGCCATGTTAGCTTGTTGAACACATTAGTATTGACATGTCACCTAATTACATAGTTTAGTTTCCTTTCTATTGGAGGGGACAATTATTATGTTAGCTCAAAAGGACCA
CTAGAAAACTATTCCATATACTCCAGGACCAAAAGAGACACAAGAAGAAAAAATAAAACTCTAA

Protein sequence

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MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISKLDGMKQTIDE
YQVKMED

Lsi02G011700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome