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Lsi02G011910 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G011910
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLEA_2 domain-containing protein
Genome locationchr02:15003831..15006365
RNA-Seq ExpressionLsi02G011910
SyntenyLsi02G011910
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004864 - Late embryogenesis abundant protein, LEA_2 subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2674349.1 hypothetical protein I3760_13G129800 [Carya illinoinensis]6.9e-2745.96Show/hide
Query:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPF-IADSPVDESVLNEINGDLA
        VDSL L+NFSSAS+       SL  +W V FSV NPNKKL+IS++ + +S++YK   I+  ++  F LR+RN T +   F  AD+ V   V+N+INGD A
Subjt:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPF-IADSPVDESVLNEINGDLA

Query:  NGAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQL
         G ++F V+V  +  F+ G WR R  + RVLC  L++G SS  S   GSG LVGG R C++
Subjt:  NGAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQL
KGN65002.2 hypothetical protein Csa_022841 [Cucumis sativus]4.3e-2971Show/hide
Query:  ARIHRFLLRRRNSTAIVTPFIADSPVDESVLNEINGDLANGAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQL
        AR  RFLL  RNST +V+PFIAD  VDESVLN+I+GDL  G I+FTVVVLGYAN +IGVWR  GT+ RV+CSDLSV FS PP  +G SGQLVGGSRQC L
Subjt:  ARIHRFLLRRRNSTAIVTPFIADSPVDESVLNEINGDLANGAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQL
XP_008463664.1 PREDICTED: uncharacterized protein LOC103501757 [Cucumis melo]4.7e-6077.64Show/hide
Query:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPFIADSPVDESVLNEINGDLAN
        +DSLQLANFSSA+AAA         SW+VGFS+NNPNKKLAISFQNL+SSIYYKDNIIAQARI RFLLR RNST +V PFIA S VDESVLN+INGDLA 
Subjt:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPFIADSPVDESVLNEINGDLAN

Query:  GAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQLR
        G INFTVVVLGYANFQI +W+WRGTN +V+CSDLSVGFS PPS  G SGQLVGGS+QCQL+
Subjt:  GAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQLR
XP_018857049.1 uncharacterized protein At1g08160-like [Juglans regia]6.2e-2847.83Show/hide
Query:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPF-IADSPVDESVLNEINGDLA
        VDSL L+NFSSAS+       SL  +W V FSV NPNKKL+IS++ + SS++YK   I+  R+  F L +RN T +   F  AD+ VD  V+N+INGD A
Subjt:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPF-IADSPVDESVLNEINGDLA

Query:  NGAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQL
         G ++F V+V  +  F+ G WR R  + RVLC  L+VG SS  S   GSG LVGG+R C++
Subjt:  NGAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQL
XP_042956465.1 uncharacterized protein At1g08160 [Carya illinoinensis]5.3e-2746.58Show/hide
Query:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPF-IADSPVDESVLNEINGDLA
        VDSL L+NFSSAS+       SL  +W V FSV NPNKKL+IS++ + +S++YK   I+  ++  F LR+RN T +   F  AD+ V   V+N+INGD A
Subjt:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPF-IADSPVDESVLNEINGDLA

Query:  NGAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQL
         G ++F V+V  +  F+ G WR R  + RVLC  L+VG SS  S   GSG LVGG R C++
Subjt:  NGAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQL
TrEMBL top hitse value%identityAlignment
A0A0A0LT76 LEA_2 domain-containing protein8.7e-5270.62Show/hide
Query:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPFIADSPVDESVLNEINGDLAN
        +DSLQ  NFS+ +AA          SWVVGFS+NNPNKKLAISF+NLESSIYYKDNIIAQAR  RFLL  RNST +V+PFIAD  VDESVLN+I+GDL  
Subjt:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPFIADSPVDESVLNEINGDLAN

Query:  GAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQL
        G I+FTVVVLGYAN +IGVWR  GT+ RV+CSDLSV FS PP  +G SGQLVGGSRQC L
Subjt:  GAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQL
A0A1S3CJS5 uncharacterized protein LOC1035017572.3e-6077.64Show/hide
Query:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPFIADSPVDESVLNEINGDLAN
        +DSLQLANFSSA+AAA         SW+VGFS+NNPNKKLAISFQNL+SSIYYKDNIIAQARI RFLLR RNST +V PFIA S VDESVLN+INGDLA 
Subjt:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPFIADSPVDESVLNEINGDLAN

Query:  GAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQLR
        G INFTVVVLGYANFQI +W+WRGTN +V+CSDLSVGFS PPS  G SGQLVGGS+QCQL+
Subjt:  GAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQLR
A0A2I4HLK5 uncharacterized protein At1g08160-like3.0e-2847.83Show/hide
Query:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPF-IADSPVDESVLNEINGDLA
        VDSL L+NFSSAS+       SL  +W V FSV NPNKKL+IS++ + SS++YK   I+  R+  F L +RN T +   F  AD+ VD  V+N+INGD A
Subjt:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPF-IADSPVDESVLNEINGDLA

Query:  NGAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQL
         G ++F V+V  +  F+ G WR R  + RVLC  L+VG SS  S   GSG LVGG+R C++
Subjt:  NGAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQL
A0A2P5BEN8 Late embryogenesis abundant protein4.5e-2442.24Show/hide
Query:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPF-IADSPVDESVLNEINGDLA
        VDSL L NF+++S+      P++  +W VGFSV NPNKK++I++  L+S ++YK   +++ RI  F    R  TAI   F  A+S VD+ V+  I+ D  
Subjt:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPF-IADSPVDESVLNEINGDLA

Query:  NGAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQL
         G +NF V VL    F+ G WR R    RVLC ++ VG SS    + GSG+LVGG+R+C++
Subjt:  NGAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQL
A0A5D3E5N0 Protein YLS9 isoform X22.3e-6077.64Show/hide
Query:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPFIADSPVDESVLNEINGDLAN
        +DSLQLANFSSA+AAA         SW+VGFS+NNPNKKLAISFQNL+SSIYYKDNIIAQARI RFLLR RNST +V PFIA S VDESVLN+INGDLA 
Subjt:  VDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPFIADSPVDESVLNEINGDLAN

Query:  GAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQLR
        G INFTVVVLGYANFQI +W+WRGTN +V+CSDLSVGFS PPS  G SGQLVGGS+QCQL+
Subjt:  GAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQLR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G05220.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family4.6e-0525.96Show/hide
Query:  PSLISSWVVGFSVN--NPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPFI--ADSPVDESVLNEINGDLANGAINFTVVVLGYANFQ
        P+ + +  + F+V   NPN+ + + F ++E SIYYKD  +    +     ++  +T IVT  +  A   V+ +   E + D A G + F + ++    F+
Subjt:  PSLISSWVVGFSVN--NPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPFI--ADSPVDESVLNEINGDLANGAINFTVVVLGYANFQ

Query:  IGVW
        +  W
Subjt:  IGVW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTGCTGGACGCTGTCGGCGCAAAGGGAATGGAGTTGAACGGATCTGCTGACGACGATGAGAGATTTAGCAAGCTCGAACTGCTGACTGACGGATCTACATGGGT
AAGCTTGTTCAATCTCATAACTGAATTCGTGGCATGGCTAACTCCTCCATGGGCGGCCGGGCGCCGCATCCTCAACCCCTATCCCATCCCCATAGCCGCAACTCCTCACC
CTTCCTCTGAGCCTTCGCCGCCGGCATGGTCTTCCTCCTTTTCATCGCTCTTTTCATCTTCCGCCCCATCCTCCCCATTAGTCGACTCACTTCAACTCGCCAATTTCTCC
TCTGCCTCTGCCGCTGCCGCTGCCGCCTTCCCGTCCCTTATCTCCTCATGGGTTGTTGGATTTTCAGTCAACAACCCCAACAAGAAGCTCGCCATCTCATTCCAAAACCT
TGAGTCCTCCATTTACTACAAAGATAACATTATCGCTCAAGCCCGAATTCACCGCTTCCTCCTCCGCCGAAGGAACTCAACGGCCATCGTCACTCCCTTCATTGCCGACT
CGCCCGTCGATGAGTCGGTTTTGAATGAAATTAATGGGGACTTGGCGAATGGAGCAATTAACTTCACCGTCGTAGTTCTTGGCTATGCCAACTTCCAGATCGGTGTGTGG
CGGTGGAGGGGCACCAATTTTCGGGTTCTTTGCAGCGATTTGTCTGTCGGATTCTCATCGCCGCCGAGTCCCAACGGCGGGTCCGGCCAGTTGGTTGGTGGCTCAAGGCA
ATGCCAGCTACGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCTGCTGGACGCTGTCGGCGCAAAGGGAATGGAGTTGAACGGATCTGCTGACGACGATGAGAGATTTAGCAAGCTCGAACTGCTGACTGACGGATCTACATGGGT
AAGCTTGTTCAATCTCATAACTGAATTCGTGGCATGGCTAACTCCTCCATGGGCGGCCGGGCGCCGCATCCTCAACCCCTATCCCATCCCCATAGCCGCAACTCCTCACC
CTTCCTCTGAGCCTTCGCCGCCGGCATGGTCTTCCTCCTTTTCATCGCTCTTTTCATCTTCCGCCCCATCCTCCCCATTAGTCGACTCACTTCAACTCGCCAATTTCTCC
TCTGCCTCTGCCGCTGCCGCTGCCGCCTTCCCGTCCCTTATCTCCTCATGGGTTGTTGGATTTTCAGTCAACAACCCCAACAAGAAGCTCGCCATCTCATTCCAAAACCT
TGAGTCCTCCATTTACTACAAAGATAACATTATCGCTCAAGCCCGAATTCACCGCTTCCTCCTCCGCCGAAGGAACTCAACGGCCATCGTCACTCCCTTCATTGCCGACT
CGCCCGTCGATGAGTCGGTTTTGAATGAAATTAATGGGGACTTGGCGAATGGAGCAATTAACTTCACCGTCGTAGTTCTTGGCTATGCCAACTTCCAGATCGGTGTGTGG
CGGTGGAGGGGCACCAATTTTCGGGTTCTTTGCAGCGATTTGTCTGTCGGATTCTCATCGCCGCCGAGTCCCAACGGCGGGTCCGGCCAGTTGGTTGGTGGCTCAAGGCA
ATGCCAGCTACGATGA
Protein sequenceShow/hide protein sequence
MDLLDAVGAKGMELNGSADDDERFSKLELLTDGSTWVSLFNLITEFVAWLTPPWAAGRRILNPYPIPIAATPHPSSEPSPPAWSSSFSSLFSSSAPSSPLVDSLQLANFS
SASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPFIADSPVDESVLNEINGDLANGAINFTVVVLGYANFQIGVW
RWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQLR