CuGenDBv2

Gene ID	Lsi02G011920
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	40S ribosomal protein S27
Genome location	chr02:15020569..15026531
RNA-Seq Expression	Lsi02G011920
Synteny	Lsi02G011920
Gene Ontology terms	GO:0000028 - ribosomal small subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009536 - plastid (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000592 - Ribosomal protein S27 IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004310130.1 PREDICTED: 40S ribosomal protein S27-2 [Fragaria vesca subsp. vesca]

2.2e-08

82.5

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEKRKHKLK L+QTPNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

XP_008369601.1 40S ribosomal protein S27-2 [Malus domestica]

2.2e-08

82.5

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEKRKHKLK L+QTPNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

XP_008390175.1 40S ribosomal protein S27-2-like [Malus domestica]

2.2e-08

82.5

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEKRKHKLK L+QTPNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

XP_019427419.1 PREDICTED: 40S ribosomal protein S27-2-like [Lupinus angustifolius]

2.2e-08

82.5

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEKRKHKLK L+QTPNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

XP_021855610.1 40S ribosomal protein S27-2-like [Spinacia oleracea]

1.7e-08

71.43

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQVALTCLYIS
        MVLQN+IDLL P  ELEKRKHKLK L+QTPNS+FMD+KCQ    CL+I+
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQVALTCLYIS

TrEMBL top hits

e value

%identity

Alignment

A0A1J7FQ33 40S ribosomal protein S27

1.0e-08

82.5

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEKRKHKLK L+QTPNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

A0A2P6R040 40S ribosomal protein S27

1.0e-08

82.5

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEKRKHKLK L+QTPNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

A0A4P1RJ69 40S ribosomal protein S27

1.0e-08

82.5

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEKRKHKLK L+QTPNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

A0A6A5MSH7 40S ribosomal protein S27

1.0e-08

82.5

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEKRKHKLK L+QTPNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

A9PD60 40S ribosomal protein S27

1.0e-08

82.5

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEKRKHKLK L+QTPNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

SwissProt top hits

e value

%identity

Alignment

O64650 40S ribosomal protein S27-1

8.2e-11

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEKRKHKLK L+Q+PNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

P47903 40S ribosomal protein S27

2.9e-08

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVL ++IDLL P  ELEK KHK K L+Q+PNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

Q8L953 40S ribosomal protein S27-3

1.1e-10

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEKRKHKLK L+Q+PNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

Q96564 40S ribosomal protein S27

2.7e-09

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEK KHK K L+Q+PNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

Q9M2F1 40S ribosomal protein S27-2

8.2e-11

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEKRKHKLK L+Q+PNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

Arabidopsis top hits

e value

%identity

Alignment

AT2G45710.1 Zinc-binding ribosomal protein family protein

5.9e-12

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEKRKHKLK L+Q+PNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

AT3G61110.1 ribosomal protein S27

5.9e-12

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEKRKHKLK L+Q+PNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

AT3G61111.1 Zinc-binding ribosomal protein family protein

1.0e-08

69.23

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKC
        MVLQN+IDLL P  ELEKRKHKLK L+ +PNS+FM ++C
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKC

AT5G47930.1 Zinc-binding ribosomal protein family protein

7.7e-12

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Query:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ
        MVLQN+IDLL P  ELEKRKHKLK L+Q+PNSFFMD+KCQ
Subjt:  MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQ

Sequences

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CDS sequence

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ATGGTTCTTCAAAACAACATCGATTTACTCATTCCTATTACTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCATCTCATACAGACGCCTAACTCATTCTTCATGGACAT
GAAGTGTCAGGTTGCTTTAACATGTCTGTATATTTCAATGGATTATGAAAATTGCATCCCCCTTTCTTGGAAACAAATTAAGATAACTATGAGCAAGGCCAGATTCAAGA
TGGAACATAACATTCTCGGGCAAGATTGTCTCAACCTTGGCTCTTTGCTTCAGCTTGGTATCCTCGGCCTTAACATTTCTCGCCTCGGCCTTGGCTCTACGCTTCAACTT
GGTCTCCTCGGTCTCGGCCAAGATTGTCTCGGCCTTGGCTCTTCGCTTCAATTTGATCTTCTCGACCTCAACTAA

mRNA sequence

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Protein sequence

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MVLQNNIDLLIPITELEKRKHKLKHLIQTPNSFFMDMKCQVALTCLYISMDYENCIPLSWKQIKITMSKARFKMEHNILGQDCLNLGSLLQLGILGLNISRLGLGSTLQL
GLLGLGQDCLGLGSSLQFDLLDLN

Lsi02G011920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome