; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G012100 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G012100
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCACTA en-spm transposon protein
Genome locationchr02:15596769..15598772
RNA-Seq ExpressionLsi02G012100
SyntenyLsi02G012100
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032748.1 hypothetical protein E6C27_scaffold853G00910 [Cucumis melo var. makuwa]6.9e-2852.67Show/hide
Query:  SFGPENRSSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGKRYNYFILDLDEPVVQYYLDHEMSVLDRDFRGSLHKTYKQYD
        S   + +SSSTKTKG+GATR VGL+KYVQ NG   I+I+ EDRK +Y         +    NYFILD++EP+VQ YL+HEMSVL RDFR SLHK+YK+YD
Subjt:  SFGPENRSSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGKRYNYFILDLDEPVVQYYLDHEMSVLDRDFRGSLHKTYKQYD

Query:  SPVEARKHCDKRVARDSNWARLCDRWESEDFKRILKQLPRLELLFHSLIE
        SP +ARKH  KRVA              +  +  LKQ+ R  L FHS IE
Subjt:  SPVEARKHCDKRVARDSNWARLCDRWESEDFKRILKQLPRLELLFHSLIE

KAA0046978.1 formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]2.4e-1274.58Show/hide
Query:  SFGPENRSSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGK
        S   + +SSSTKTKGRGATRGVGL+KYVQANG I I+I+ EDRK + KDSSKLNSQIGK
Subjt:  SFGPENRSSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGK

KAE8651942.1 hypothetical protein Csa_006405 [Cucumis sativus]2.8e-2160.44Show/hide
Query:  VYKDSSKLNSQIGKRYNYF----ILDLDEPVVQYYLDHEMSVLDRDFRGSLHKTYKQYDSPVEARKHCDKRVARDSNWARLCDRWESEDFK
        +++ ++   + IG++   F    I +LD+P+VQ YLDHEMSVL RDF  SLHK+YK+ DSP EARKHCDKRVA+DS+WARLCDRWE E FK
Subjt:  VYKDSSKLNSQIGKRYNYF----ILDLDEPVVQYYLDHEMSVLDRDFRGSLHKTYKQYDSPVEARKHCDKRVARDSNWARLCDRWESEDFK

TYJ98779.1 hypothetical protein E5676_scaffold156G00880 [Cucumis melo var. makuwa]6.9e-2852.67Show/hide
Query:  SFGPENRSSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGKRYNYFILDLDEPVVQYYLDHEMSVLDRDFRGSLHKTYKQYD
        S   + +SSSTKTKG+GATR VGL+KYVQ NG   I+I+ EDRK +Y         +    NYFILD++EP+VQ YL+HEMSVL RDFR SLHK+YK+YD
Subjt:  SFGPENRSSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGKRYNYFILDLDEPVVQYYLDHEMSVLDRDFRGSLHKTYKQYD

Query:  SPVEARKHCDKRVARDSNWARLCDRWESEDFKRILKQLPRLELLFHSLIE
        SP +ARKH  KRVA              +  +  LKQ+ R  L FHS IE
Subjt:  SPVEARKHCDKRVARDSNWARLCDRWESEDFKRILKQLPRLELLFHSLIE

TYK04806.1 formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]1.8e-1255.32Show/hide
Query:  MSSRSFGPENR-------------------------------SSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGK
        MSSR+FGP NR                               SSSTKTKGRGATRGVGL+KYVQANG I I+I+ EDRK + KDSSKLNSQIGK
Subjt:  MSSRSFGPENR-------------------------------SSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGK

TrEMBL top hitse value%identityAlignment
A0A0A0LM17 Uncharacterized protein9.3e-3977.98Show/hide
Query:  LKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGKRYNYFILDLDEPVVQYYLDHEMSVLDRDFRGSLHKTYKQYDSPVEARKHCDKRVARDSNWARLC
        L+KYVQANG I IKIEL+DRK + KDSSK NSQIGK  NYFILDLD+P+VQ YLDHEMSVL RDF  SLHK+YK+ DSP EARKHCDKRVA+DS+WARLC
Subjt:  LKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGKRYNYFILDLDEPVVQYYLDHEMSVLDRDFRGSLHKTYKQYDSPVEARKHCDKRVARDSNWARLC

Query:  DRWESEDFK
        DRWE E FK
Subjt:  DRWESEDFK

A0A5A7SQC8 DUF4218 domain-containing protein3.3e-2852.67Show/hide
Query:  SFGPENRSSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGKRYNYFILDLDEPVVQYYLDHEMSVLDRDFRGSLHKTYKQYD
        S   + +SSSTKTKG+GATR VGL+KYVQ NG   I+I+ EDRK +Y         +    NYFILD++EP+VQ YL+HEMSVL RDFR SLHK+YK+YD
Subjt:  SFGPENRSSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGKRYNYFILDLDEPVVQYYLDHEMSVLDRDFRGSLHKTYKQYD

Query:  SPVEARKHCDKRVARDSNWARLCDRWESEDFKRILKQLPRLELLFHSLIE
        SP +ARKH  KRVA              +  +  LKQ+ R  L FHS IE
Subjt:  SPVEARKHCDKRVARDSNWARLCDRWESEDFKRILKQLPRLELLFHSLIE

A0A5A7TVR8 Formin-like protein 4 isoform X21.1e-1274.58Show/hide
Query:  SFGPENRSSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGK
        S   + +SSSTKTKGRGATRGVGL+KYVQANG I I+I+ EDRK + KDSSKLNSQIGK
Subjt:  SFGPENRSSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGK

A0A5D3BIG6 DUF4218 domain-containing protein3.3e-2852.67Show/hide
Query:  SFGPENRSSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGKRYNYFILDLDEPVVQYYLDHEMSVLDRDFRGSLHKTYKQYD
        S   + +SSSTKTKG+GATR VGL+KYVQ NG   I+I+ EDRK +Y         +    NYFILD++EP+VQ YL+HEMSVL RDFR SLHK+YK+YD
Subjt:  SFGPENRSSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGKRYNYFILDLDEPVVQYYLDHEMSVLDRDFRGSLHKTYKQYD

Query:  SPVEARKHCDKRVARDSNWARLCDRWESEDFKRILKQLPRLELLFHSLIE
        SP +ARKH  KRVA              +  +  LKQ+ R  L FHS IE
Subjt:  SPVEARKHCDKRVARDSNWARLCDRWESEDFKRILKQLPRLELLFHSLIE

A0A5D3C2Z5 Formin-like protein 4 isoform X28.8e-1355.32Show/hide
Query:  MSSRSFGPENR-------------------------------SSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGK
        MSSR+FGP NR                               SSSTKTKGRGATRGVGL+KYVQANG I I+I+ EDRK + KDSSKLNSQIGK
Subjt:  MSSRSFGPENR-------------------------------SSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATGTCTTCAAGAAGTTTCGGACCAGAAAATCGTAGTTCTAGTACTAAAACCAAAGGCCGAGGAGCGACTAGAGGGGTTGGACTTAAGAAATATGTCCAAGCAAA
TGGTCGCATTGCTATTAAAATTGAACTCGAAGACAGAAAACGGGTTTATAAGGACTCGTCCAAATTGAACTCTCAAATTGGAAAGAGGTACAATTACTTCATTCTAGACT
TGGATGAACCTGTGGTACAATATTATCTTGATCACGAGATGAGTGTACTAGATAGAGACTTTCGTGGTTCACTACACAAAACCTATAAACAGTACGACTCTCCAGTTGAA
GCACGAAAACACTGCGACAAACGAGTGGCACGAGATTCGAATTGGGCTCGTTTATGTGATCGATGGGAAAGCGAGGACTTTAAGCGTATTCTAAAGCAACTACCAAGGCT
CGAGCTGCTCTTCCATTCACTCATAGAGGTGGGTCTGCGACATTTTTATGCCATAAGCGGAAAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATGTCTTCAAGAAGTTTCGGACCAGAAAATCGTAGTTCTAGTACTAAAACCAAAGGCCGAGGAGCGACTAGAGGGGTTGGACTTAAGAAATATGTCCAAGCAAA
TGGTCGCATTGCTATTAAAATTGAACTCGAAGACAGAAAACGGGTTTATAAGGACTCGTCCAAATTGAACTCTCAAATTGGAAAGAGGTACAATTACTTCATTCTAGACT
TGGATGAACCTGTGGTACAATATTATCTTGATCACGAGATGAGTGTACTAGATAGAGACTTTCGTGGTTCACTACACAAAACCTATAAACAGTACGACTCTCCAGTTGAA
GCACGAAAACACTGCGACAAACGAGTGGCACGAGATTCGAATTGGGCTCGTTTATGTGATCGATGGGAAAGCGAGGACTTTAAGCGTATTCTAAAGCAACTACCAAGGCT
CGAGCTGCTCTTCCATTCACTCATAGAGGTGGGTCTGCGACATTTTTATGCCATAAGCGGAAAA
Protein sequenceShow/hide protein sequence
MKMSSRSFGPENRSSSTKTKGRGATRGVGLKKYVQANGRIAIKIELEDRKRVYKDSSKLNSQIGKRYNYFILDLDEPVVQYYLDHEMSVLDRDFRGSLHKTYKQYDSPVE
ARKHCDKRVARDSNWARLCDRWESEDFKRILKQLPRLELLFHSLIEVGLRHFYAISGK